Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020846

Physical Location & Seq

Genomic Coordinates Reverse (-)

7879558 .. 7883926

Gene Structure 4369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G13560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTCGCAACAACAATTCAACGCCGGACAGAACAGAGGCCAAGCTCAAGAGAAAGCTGAGCAATGGACCGAGTCTGCGAAGCAAACCGCACAGTCCGCATGTGACAAAACTGCTGATTTGACACAATCAGCACGTGACAAGGCTGCAGATTTGACACAATCAGCTCGTGACAAAACCGCTGATGGATCTCATTCCGCTAACAAATCTGCACAACATAACCAGGAACAAGCCGCTGGTTTATTCGGCCAGACCGGTGAATCAGTGAAGAACATGGCTCAGGGTGCTCTTGACGGTGTGAAGAACAGTCTTGGCATGAACGAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0031647 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050821 GO:0050826 GO:0050896 GO:0065007 GO:0065008 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

109

Amino Acids

11.58

Weight (kDa)

6.72

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13560 AT4G13560
malus_domestica	MD13G1226500.v1.1 MD16G1231600.v1.1
prunus_persica	Prupe.1G053900_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	87, 96, 177, 195, 231
AclWI	GGATC	1 cut(s)	193
AcoI	YGGCCR	1 cut(s)	244
AcvI	CACGTG	1 cut(s)	134
AgeI	ACCGGT	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	3 cut(s)	44, 56, 164
AluI	AGCT	3 cut(s)	44, 56, 164
Alw21I	GWGCWC	1 cut(s)	286
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	2 cut(s)	37, 244
ApeKI	GCWGC	1 cut(s)	143
AsiGI	ACCGGT	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	66
BauI	CACGAG	1 cut(s)	165
BbrPI	CACGTG	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	2 cut(s)	144, 231
BlpI	GCTNAGC	1 cut(s)	57
BlsI	GCNGC	2 cut(s)	145, 232
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	221
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu1102I	GCTNAGC	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	30
BsaAI	YACGTR	1 cut(s)	134
BsaWI	WCCGGW	1 cut(s)	251
Bse118I	RCCGGY	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	2 cut(s)	48, 290
BseXI	GCAGC	1 cut(s)	130
BsgI	GTGCAG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	39, 246
BshTI	ACCGGT	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	286
BsiSI	CCGG	2 cut(s)	24, 252
BsnI	GGCC	2 cut(s)	39, 246
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	1 cut(s)	185
Bsp1720I	GCTNAGC	1 cut(s)	57
BspACI	CCGC	5 cut(s)	87, 96, 177, 195, 231
BspANI	GGCC	2 cut(s)	39, 246
BspCNI	CTCAG	2 cut(s)	49, 289
BspMAI	CTGCAG	1 cut(s)	148
BspPI	GGATC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	251
BssMI	GATC	1 cut(s)	185
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	3 cut(s)	93, 293, 305
BstBAI	YACGTR	1 cut(s)	134
BstDEI	CTNAG	2 cut(s)	57, 276
BstKTI	GATC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 281
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	39, 246
BtsIMutI	CAGTG	1 cut(s)	267
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	66
CspAI	ACCGGT	1 cut(s)	251
CviAII	CATG	3 cut(s)	99, 271, 313
CviJI	RGCY	8 cut(s)	39, 44, 56, 143, 164, 230, 246, 275
CviKI_1	RGCY	8 cut(s)	39, 44, 56, 143, 164, 230, 246, 275
DdeI	CTNAG	2 cut(s)	57, 276
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	66
Eco72I	CACGTG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	219
FaeI	CATG	3 cut(s)	102, 274, 316
FaiI	YATR	4 cut(s)	100, 216, 272, 314
FatI	CATG	3 cut(s)	98, 270, 312
Fnu4HI	GCNGC	2 cut(s)	144, 231
Fsp4HI	GCNGC	2 cut(s)	144, 231
GluI	GCNGC	2 cut(s)	144, 231
HaeIII	GGCC	2 cut(s)	39, 246
HapII	CCGG	2 cut(s)	24, 252
Hin1II	CATG	3 cut(s)	102, 274, 316
HinfI	GANTC	2 cut(s)	71, 257
HpaII	CCGG	2 cut(s)	24, 252
HphI	GGTGA	1 cut(s)	266
Hpy188III	TCNNGA	3 cut(s)	47, 167, 287
HpyCH4III	ACNGT	3 cut(s)	93, 293, 305
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	2 cut(s)	146, 209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 281
HpyF3I	CTNAG	2 cut(s)	57, 276
HpySE526I	ACGT	1 cut(s)	133
Hsp92II	CATG	3 cut(s)	102, 274, 316
Kzo9I	GATC	1 cut(s)	185
LpnPI	CCDG	7 cut(s)	37, 206, 219, 233, 260, 263, 265
Lsp1109I	GCAGC	1 cut(s)	130
MaeII	ACGT	1 cut(s)	133
MaeIII	GTNAC	3 cut(s)	101, 134, 167
MalI	GATC	1 cut(s)	187
MboI	GATC	1 cut(s)	185
MboII	GAAGA	2 cut(s)	277, 310
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	1 cut(s)	14
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	1 cut(s)	29
MspA1I	CMGCKG	2 cut(s)	179, 233
MspI	CCGG	2 cut(s)	24, 252
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	95, 281
NdeII	GATC	1 cut(s)	185
NlaIII	CATG	3 cut(s)	102, 274, 316
NmuCI	GTSAC	3 cut(s)	101, 134, 167
NspI	RCATGY	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	257
PflFI	GACNNNGTC	1 cut(s)	70
PinAI	ACCGGT	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	145, 232
PleI	GAGTC	1 cut(s)	79
PmaCI	CACGTG	1 cut(s)	134
PmlI	CACGTG	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	79
Ppu21I	YACGTR	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	219
PspCI	CACGTG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	66
PstI	CTGCAG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	185
PsyI	GACNNNGTC	1 cut(s)	70
SatI	GCNGC	2 cut(s)	144, 231
Sau3AI	GATC	1 cut(s)	185
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	4 cut(s)	46, 58, 136, 166
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	45
SmoI	CTYRAG	1 cut(s)	45
Sse9I	AATT	1 cut(s)	14
SsiI	CCGC	5 cut(s)	87, 96, 177, 195, 231
StyD4I	CCNGG	1 cut(s)	219
TaaI	ACNGT	3 cut(s)	93, 293, 305
TaiI	ACGT	1 cut(s)	136
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	1 cut(s)	14
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	257
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	3 cut(s)	101, 134, 167
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	3 cut(s)	101, 134, 167
TspDTI	ATGAA	1 cut(s)	329
TspRI	CASTG	1 cut(s)	267
Tth111I	GACNNNGTC	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	66
XceI	RCATGY	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.