MD16G1231600.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0020846
Physical Location & Seq
Forward (+)
23754768 .. 23756001
1234 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1231600.v1.1.491

Sequence Viewer

Length: 270 bp
ATGTCCAGCATGCAGCAACCATTCAATGCAGGCCAATCCCAAGGCCAGGGCCAGGCTAAGGCAGAAGAGTGGATGCAGTCCACACAAGAAACAGCACATGAAGCTAGGAACGCAACAGCTGATGCAGCTCAATCAGCCAAGGAGTCTTCTCAGCATGGAAAGGACCAAAGTGCTGGTTTTCTTCAGCAGACTGGAGAGCAAGTGATGAACATGGCACACGGTGCTATGGACAGCGTGAAGAACACACTTGGAATGAATGAAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.56

Weight (kDa)

5.47

Isoelectric Point (pI)

58.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13560 AT4G13560
malus_domestica MD13G1226500.v1.1 MD16G1231600.v1.1
prunus_persica Prupe.1G053900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 167
AdeI CACNNNGTG 1 cut(s) 221
AfiI CCNNNNNNNGG 3 cut(s) 46, 52, 58
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 2 cut(s) 45, 51
AluBI AGCT 3 cut(s) 104, 119, 128
AluI AGCT 3 cut(s) 104, 119, 128
AoxI GGCC 3 cut(s) 31, 43, 49
ApeKI GCWGC 2 cut(s) 13, 125
AspS9I GGNCC 2 cut(s) 49, 163
AvaII GGWCC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 138
BbvI GCAGC 2 cut(s) 25, 137
BciT130I CCWGG 2 cut(s) 47, 53
BfaI CTAG 1 cut(s) 105
BisI GCNGC 2 cut(s) 14, 126
BlsI GCNGC 2 cut(s) 15, 127
Bme1390I CCNGG 2 cut(s) 47, 53
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 49, 163
BmrFI CCNGG 2 cut(s) 47, 53
BmsI GCATC 2 cut(s) 63, 112
BpiI GAAGAC 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 57
BsaJI CCNNGG 3 cut(s) 40, 46, 138
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 52, 58
Bse1I ACTGG 1 cut(s) 196
BseBI CCWGG 2 cut(s) 47, 53
BseDI CCNNGG 3 cut(s) 40, 46, 138
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 3 cut(s) 46, 52, 58
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 196
BseXI GCAGC 2 cut(s) 25, 137
BshFI GGCC 3 cut(s) 33, 45, 51
BslI CCNNNNNNNGG 3 cut(s) 46, 52, 58
BsnI GGCC 3 cut(s) 33, 45, 51
BspANI GGCC 3 cut(s) 33, 45, 51
BspCNI CTCAG 1 cut(s) 163
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 3 cut(s) 40, 46, 138
BssT1I CCWWGG 2 cut(s) 40, 138
Bst2UI CCWGG 2 cut(s) 47, 53
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 60
BstAPI GCANNNNNTGC 1 cut(s) 221
BstC8I GCNNGC 2 cut(s) 11, 31
BstDEI CTNAG 2 cut(s) 57, 150
BstF5I GGATG 1 cut(s) 78
BstMWI GCNNNNNNNGC 5 cut(s) 101, 110, 125, 134, 221
BstNI CCWGG 2 cut(s) 47, 53
BstNSI RCATGY 1 cut(s) 13
BstSCI CCNGG 2 cut(s) 45, 51
BstV1I GCAGC 2 cut(s) 25, 137
BstV2I GAAGAC 1 cut(s) 138
BstXI CCANNNNNNTGG 1 cut(s) 173
BsuRI GGCC 3 cut(s) 33, 45, 51
BtsCI GGATG 1 cut(s) 78
Cac8I GCNNGC 2 cut(s) 11, 31
Cfr13I GGNCC 2 cut(s) 49, 163
CviAII CATG 4 cut(s) 10, 98, 155, 211
CviJI RGCY 8 cut(s) 33, 45, 51, 56, 104, 119, 128, 137
CviKI_1 RGCY 8 cut(s) 33, 45, 51, 56, 104, 119, 128, 137
DdeI CTNAG 2 cut(s) 57, 150
DraIII CACNNNGTG 1 cut(s) 221
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 40, 138
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 45, 51
EcoT14I CCWWGG 2 cut(s) 40, 138
ErhI CCWWGG 2 cut(s) 40, 138
FaeI CATG 4 cut(s) 13, 101, 158, 214
FaiI YATR 5 cut(s) 11, 99, 156, 212, 227
FatI CATG 4 cut(s) 9, 97, 154, 210
Fnu4HI GCNGC 2 cut(s) 14, 126
FokI GGATG 1 cut(s) 85
Fsp4HI GCNGC 2 cut(s) 14, 126
FspBI CTAG 1 cut(s) 105
GluI GCNGC 2 cut(s) 14, 126
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 3 cut(s) 33, 45, 51
Hin1II CATG 4 cut(s) 13, 101, 158, 214
HinfI GANTC 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 81
Hpy8I GTNNAC 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4V TGCA 4 cut(s) 13, 29, 76, 125
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 110, 125, 134, 221
HpyF3I CTNAG 2 cut(s) 57, 150
Hsp92II CATG 4 cut(s) 13, 101, 158, 214
LpnPI CCDG 8 cut(s) 15, 19, 32, 38, 59, 65, 159, 177
Lsp1109I GCAGC 2 cut(s) 25, 137
LweI GCATC 2 cut(s) 63, 112
MaeI CTAG 1 cut(s) 105
MboII GAAGA 4 cut(s) 77, 138, 173, 250
MlyI GAGTC 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 119
MspR9I CCNGG 2 cut(s) 47, 53
MvaI CCWGG 2 cut(s) 47, 53
MwoI GCNNNNNNNGC 5 cut(s) 101, 110, 125, 134, 221
NlaIII CATG 4 cut(s) 13, 101, 158, 214
NspI RCATGY 1 cut(s) 13
PaeI GCATGC 1 cut(s) 13
PkrI GCNGC 2 cut(s) 15, 127
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
Psp6I CCWGG 2 cut(s) 45, 51
PspGI CCWGG 2 cut(s) 45, 51
PspPI GGNCC 2 cut(s) 49, 163
PvuII CAGCTG 1 cut(s) 119
SatI GCNGC 2 cut(s) 14, 126
Sau96I GGNCC 2 cut(s) 49, 163
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 2 cut(s) 47, 53
SetI ASST 3 cut(s) 106, 121, 130
SfaNI GCATC 2 cut(s) 63, 112
SinI GGWCC 1 cut(s) 163
SphI GCATGC 1 cut(s) 13
SspMI CTAG 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 45, 51
StyI CCWWGG 2 cut(s) 40, 138
TaaI ACNGT 1 cut(s) 221
TseI GCWGC 2 cut(s) 13, 125
TspDTI ATGAA 3 cut(s) 114, 221, 269
VpaK11BI GGWCC 1 cut(s) 163
XceI RCATGY 1 cut(s) 13
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.