AT4G19910

RESISTANCE protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0023728
Physical Location & Seq
Reverse (-)
10795869 .. 10796687
819 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19910.1

Sequence Viewer

Length: 726 bp
ATGGCGATACAAGCACGTCCTCTAGTGTTTATCAATCATGGTGAAAGCGATCAGAGCGACGGATTCATTAGGCATGTGGAAAGAGCCTTAAATGACGAAGGGTTTAACGTTTTCATAGATAGTGACGAGCGAAGAGGAAGAGGCATGGAACACATTTTCAGAGCGATCGATAACTCAAATGTCGCATTAGTGATTTTCTCTGACCGGTACACAGCGTCAGAGTTGTGTTTGCACGAAGCGGTGAGGATCTATGATCGACGTAGGGAAGGAAAACTCGTGTTGATCCCTGTCTTCTATAGGGTTTCAGAAGACGACGTGAATATGTTCAATGGTAGATTTGGAGAGAGTTTTTTGGAAACGTTGACGATTCAGGGCTTCAGGGATCATCCATTTGCCGAGCATTGGATGAGAAATGTGAATTTTATCTGCACAGATACTGGTTTCACCTCAGCAGATTACAGCAGCAATGATACTTCTCTTGTGGAGGAGATTGTAAGGGCTATTAAGAGACGTCTACAGGGCAAGAAACTTCCGAGACGTGTGCAAGATGAAAAACTACCTAGCCCTTTAGACATGTTCATGCCAAAACAACCGAATGCTCAAGAGGGGTTTGGAAAAGAGTTGCTTTATGTTGCTATTGCTGCTTTGCTCTGCTATTTCATTATCCCTTTTGTTTTCACAGATTGGATGTCTTCAGTATCCTTCAGTGGCTCGTTGCTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIR

Protein Analysis

241

Amino Acids

27.79

Weight (kDa)

5.57

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 9 - 176 6.5e-26 TIR domain
TIR_2 PF13676 9 - 103 1e-12 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023728)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19910 AT4G19920 AT4G19925

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 514
AccI GTMKAC 1 cut(s) 514
AciI CCGC 1 cut(s) 239
AclI AACGTT 2 cut(s) 108, 359
AclWI GGATC 3 cut(s) 254, 277, 390
AcsI RAATTY 1 cut(s) 418
AcuI CTGAAG 3 cut(s) 361, 678, 688
AcyI GRCGYC 1 cut(s) 511
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 402
AflIII ACRYGT 2 cut(s) 538, 573
AgeI ACCGGT 1 cut(s) 204
AgsI TTSAA 1 cut(s) 328
AjiI CACGTC 3 cut(s) 17, 316, 539
Alw26I GTCTC 2 cut(s) 502, 529
AlwI GGATC 3 cut(s) 254, 277, 390
AlwNI CAGNNNCTG 1 cut(s) 437
ApeKI GCWGC 2 cut(s) 462, 641
ApoI RAATTY 1 cut(s) 418
AsiGI ACCGGT 1 cut(s) 204
Asp700I GAANNNNTTC 1 cut(s) 323
AsuHPI GGTGA 3 cut(s) 53, 253, 436
BauI CACGAG 1 cut(s) 275
BbsI GAAGAC 3 cut(s) 283, 315, 684
BbvCI CCTCAGC 1 cut(s) 448
BbvI GCAGC 2 cut(s) 474, 628
BcgI CGANNNNNNTGC 2 cut(s) 523, 557
BciVI GTATCC 1 cut(s) 709
BcoDI GTCTC 2 cut(s) 502, 529
BfaI CTAG 2 cut(s) 23, 561
BfmI CTRYAG 2 cut(s) 295, 515
BfuI GTATCC 1 cut(s) 709
BisI GCNGC 2 cut(s) 463, 642
BlsI GCNGC 2 cut(s) 464, 643
BmgBI CACGTC 3 cut(s) 17, 316, 539
BpiI GAAGAC 3 cut(s) 283, 315, 684
Bpu10I CCTNAGC 1 cut(s) 448
BpuEI CTTGAG 1 cut(s) 585
Bsa29I ATCGAT 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 511
BsaWI WCCGGW 1 cut(s) 204
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse118I RCCGGY 1 cut(s) 204
Bse1I ACTGG 1 cut(s) 442
Bse3DI GCAATG 1 cut(s) 472
BseCI ATCGAT 1 cut(s) 168
BseGI GGATG 3 cut(s) 385, 411, 693
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMI GCAATG 1 cut(s) 472
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 1 cut(s) 442
BseRI GAGGAG 1 cut(s) 500
BseXI GCAGC 2 cut(s) 474, 628
BsgI GTGCAG 1 cut(s) 412
Bsh1285I CGRYCG 1 cut(s) 168
BshTI ACCGGT 1 cut(s) 204
BshVI ATCGAT 1 cut(s) 168
BsiEI CGRYCG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 402
BsmAI GTCTC 2 cut(s) 502, 529
BsmBI CGTCTC 2 cut(s) 502, 529
BsmI GAATGC 1 cut(s) 601
Bsp143I GATC 6 cut(s) 49, 165, 246, 253, 282, 382
BspACI CCGC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 461
BspDI ATCGAT 1 cut(s) 168
BspPI GGATC 3 cut(s) 254, 277, 390
BsrDI GCAATG 1 cut(s) 472
BsrFI RCCGGY 1 cut(s) 204
BsrI ACTGG 1 cut(s) 442
BssAI RCCGGY 1 cut(s) 204
BssMI GATC 6 cut(s) 49, 165, 246, 253, 282, 382
BssNI GRCGYC 1 cut(s) 511
BssSI CACGAG 1 cut(s) 275
Bst2BI CACGAG 1 cut(s) 275
Bst6I CTCTTC 2 cut(s) 127, 133
BstACI GRCGYC 1 cut(s) 511
BstDEI CTNAG 1 cut(s) 448
BstF5I GGATG 3 cut(s) 385, 411, 693
BstKTI GATC 6 cut(s) 52, 168, 249, 256, 285, 385
BstMAI GTCTC 2 cut(s) 502, 529
BstMBI GATC 6 cut(s) 49, 165, 246, 253, 282, 382
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 3 cut(s) 11, 54, 641
BstNSI RCATGY 2 cut(s) 77, 577
BstSFI CTRYAG 2 cut(s) 295, 515
BstV1I GCAGC 2 cut(s) 474, 628
BstV2I GAAGAC 3 cut(s) 283, 315, 684
BstX2I RGATCY 1 cut(s) 246
BstYI RGATCY 1 cut(s) 246
Bsu15I ATCGAT 1 cut(s) 168
BsuI GTATCC 1 cut(s) 709
BsuTUI ATCGAT 1 cut(s) 168
BtrI CACGTC 3 cut(s) 17, 316, 539
BtsCI GGATG 3 cut(s) 385, 411, 693
BtsIMutI CAGTG 1 cut(s) 712
CaiI CAGNNNCTG 1 cut(s) 437
Cfr10I RCCGGY 1 cut(s) 204
ClaI ATCGAT 1 cut(s) 168
CseI GACGC 1 cut(s) 204
Csp6I GTAC 1 cut(s) 208
CspAI ACCGGT 1 cut(s) 204
CviAII CATG 5 cut(s) 38, 74, 145, 574, 580
CviJI RGCY 5 cut(s) 86, 375, 500, 564, 711
CviKI_1 RGCY 5 cut(s) 86, 375, 500, 564, 711
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 1 cut(s) 448
DpnI GATC 6 cut(s) 51, 167, 248, 255, 284, 384
DpnII GATC 6 cut(s) 49, 165, 246, 253, 282, 382
Eam1104I CTCTTC 2 cut(s) 127, 133
EarI CTCTTC 2 cut(s) 127, 133
Eco57I CTGAAG 3 cut(s) 361, 678, 688
Esp3I CGTCTC 2 cut(s) 502, 529
FaeI CATG 5 cut(s) 41, 77, 148, 577, 583
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FatI CATG 5 cut(s) 37, 73, 144, 573, 579
FblI GTMKAC 1 cut(s) 514
Fnu4HI GCNGC 2 cut(s) 463, 642
FokI GGATG 3 cut(s) 372, 418, 700
Fsp4HI GCNGC 2 cut(s) 463, 642
FspBI CTAG 2 cut(s) 23, 561
GluI GCNGC 2 cut(s) 463, 642
HapII CCGG 1 cut(s) 205
HgaI GACGC 1 cut(s) 204
Hin1I GRCGYC 1 cut(s) 511
Hin1II CATG 5 cut(s) 41, 77, 148, 577, 583
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HinfI GANTC 2 cut(s) 63, 367
HpaII CCGG 1 cut(s) 205
HphI GGTGA 3 cut(s) 53, 253, 436
Hpy166II GTNNAC 3 cut(s) 210, 363, 515
Hpy188I TCNGA 7 cut(s) 54, 161, 202, 220, 307, 534, 725
Hpy188III TCNNGA 1 cut(s) 602
Hpy8I GTNNAC 3 cut(s) 210, 363, 515
Hpy99I CGWCG 3 cut(s) 62, 261, 317
HpyAV CCTTC 3 cut(s) 92, 260, 712
HpyCH4IV ACGT 7 cut(s) 16, 108, 259, 315, 359, 511, 538
HpyCH4V TGCA 3 cut(s) 232, 429, 544
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 54, 641
HpyF3I CTNAG 1 cut(s) 448
HpySE526I ACGT 7 cut(s) 16, 108, 259, 315, 359, 511, 538
Hsp92I GRCGYC 1 cut(s) 511
Hsp92II CATG 5 cut(s) 41, 77, 148, 577, 583
Kzo9I GATC 6 cut(s) 49, 165, 246, 253, 282, 382
LpnPI CCDG 6 cut(s) 218, 300, 356, 364, 423, 503
Lsp1109I GCAGC 2 cut(s) 474, 628
MaeI CTAG 2 cut(s) 23, 561
MaeII ACGT 7 cut(s) 16, 108, 259, 315, 359, 511, 538
MaeIII GTNAC 1 cut(s) 122
MalI GATC 6 cut(s) 51, 167, 248, 255, 284, 384
MboI GATC 6 cut(s) 49, 165, 246, 253, 282, 382
MboII GAAGA 5 cut(s) 144, 150, 283, 320, 684
MflI RGATCY 1 cut(s) 246
MluCI AATT 1 cut(s) 418
MnlI CCTC 7 cut(s) 30, 128, 134, 237, 457, 478, 598
MroXI GAANNNNTTC 1 cut(s) 323
MseI TTAA 3 cut(s) 89, 105, 504
MslI CAYNNNNRTG 1 cut(s) 578
MspI CCGG 1 cut(s) 205
Mva1269I GAATGC 1 cut(s) 601
MwoI GCNNNNNNNGC 3 cut(s) 11, 54, 641
NdeII GATC 6 cut(s) 49, 165, 246, 253, 282, 382
NlaIII CATG 5 cut(s) 41, 77, 148, 577, 583
NmeAIII GCCGAG 1 cut(s) 421
NmuCI GTSAC 1 cut(s) 122
NspI RCATGY 2 cut(s) 77, 577
PciI ACATGT 1 cut(s) 573
PctI GAATGC 1 cut(s) 601
PdmI GAANNNNTTC 1 cut(s) 323
PfeI GAWTC 2 cut(s) 63, 367
PinAI ACCGGT 1 cut(s) 204
PkrI GCNGC 2 cut(s) 464, 643
Ple19I CGATCG 1 cut(s) 168
PscI ACATGT 1 cut(s) 573
Psp1406I AACGTT 2 cut(s) 108, 359
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 1 cut(s) 246
PvuI CGATCG 1 cut(s) 168
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 578
SaqAI TTAA 3 cut(s) 89, 105, 504
SatI GCNGC 2 cut(s) 463, 642
Sau3AI GATC 6 cut(s) 49, 165, 246, 253, 282, 382
SetI ASST 9 cut(s) 19, 111, 262, 318, 362, 449, 514, 541, 562
SfcI CTRYAG 2 cut(s) 295, 515
SmiMI CAYNNNNRTG 1 cut(s) 578
SmlI CTYRAG 1 cut(s) 600
SmoI CTYRAG 1 cut(s) 600
Sse9I AATT 1 cut(s) 418
SsiI CCGC 1 cut(s) 239
SspMI CTAG 2 cut(s) 23, 561
TaiI ACGT 7 cut(s) 19, 111, 262, 318, 362, 514, 541
TaqI TCGA 2 cut(s) 168, 256
TasI AATT 1 cut(s) 418
TfiI GAWTC 2 cut(s) 63, 367
Tru1I TTAA 3 cut(s) 89, 105, 504
Tru9I TTAA 3 cut(s) 89, 105, 504
TscAI CASTG 1 cut(s) 712
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 2 cut(s) 462, 641
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 5 cut(s) 55, 103, 564, 568, 649
TspGWI ACGGA 1 cut(s) 75
TspRI CASTG 1 cut(s) 712
XapI RAATTY 1 cut(s) 418
XceI RCATGY 2 cut(s) 77, 577
XmiI GTMKAC 1 cut(s) 514
XmnI GAANNNNTTC 1 cut(s) 323
XspI CTAG 2 cut(s) 23, 561
ZraI GACGTC 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.