AT4G19920

RESISTANCE protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0023728
Physical Location & Seq
Reverse (-)
10797198 .. 10798527
1330 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19920.1

Sequence Viewer

Length: 825 bp
ATGGACCCTCCTAGTCCTCCTCCTCCTCCCATTCCTGAATCCCGACCACGACCTCTTACTCCTCCCGTGCTCCTAACCCGACCACGACCTCCTCTTCCTTATGCTCGCCCTCTTCAGCCACCGCAAAGTCTTCCACCCCGACCACGACCCCAGGTGTTTGTTAGTTTCCGAGGAAAGGAGCTGCGCCACGGCTTCGTGAGTCATGTAGTGAAAGCCTTGAGAATTGCAGGGGTCAACGTTTTCATTGATAGCAACGAGATGAAAGGGAGAGACCTTCAAAACCTCTTCAAGAGAATCGAAAACTCAAAGATGGCACTCGTGATCTTCTCTGACCGGTTCTCGGAGTCAGACTGGTGCTTAAACGAGCTCGTGAAGATTGATGATTGCGTGAAGGAAGGGAAACTAACAGTGATCCCTGTCTTCTACAGGGTCAATACAGACGACGTGAAAAATTTCAAAGGTAAATTTGGAAGTTGTTTTATAGAAACGGTGCAGAGACAGTCTCCTAAGGAGGAACCTATGGCCGAACGTTGGGTGAACTCTGTGAAATCTATTTCGTCCAAGACCGGCTTCACCTCAGAAGTCCACAGAATAGATAGCTATCTTGTGGATGCGATTGTTCGGGACGTTAAGAGACAGCTACCATACGTTCCCACTAAAGAGAAGGAATTGCCCATTGAAACAGAGATTTTCTTCGCTCTTGTTTTGGCTGGTCTCTGTAATTTCATAGCACCTTTAATATTCAATGACACGAGTTTCTACAAGACTCCTCAATGGTTTGTAGGTGTTTTGTTTTTGGTTCTAATCCGCAGGAAGTTCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIR

Protein Analysis

274

Amino Acids

31.39

Weight (kDa)

9.59

Isoelectric Point (pI)

59.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 51 - 220 2.3e-35 TIR domain
TIR_2 PF13676 52 - 145 1.9e-13 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023728)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19910 AT4G19920 AT4G19925

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 122, 808
AclI AACGTT 2 cut(s) 237, 529
AclWI GGATC 1 cut(s) 406
AcoI YGGCCR 1 cut(s) 522
AcsI RAATTY 2 cut(s) 451, 464
AcuI CTGAAG 1 cut(s) 98
AfiI CCNNNNNNNGG 3 cut(s) 175, 340, 531
AgeI ACCGGT 1 cut(s) 333
AgsI TTSAA 5 cut(s) 278, 289, 457, 680, 745
AjiI CACGTC 1 cut(s) 445
AjnI CCWGG 1 cut(s) 150
AjuI GAANNNNNNNTTGG 2 cut(s) 554, 586
AluBI AGCT 4 cut(s) 181, 367, 600, 640
AluI AGCT 4 cut(s) 181, 367, 600, 640
Alw21I GWGCWC 2 cut(s) 72, 369
Alw26I GTCTC 5 cut(s) 264, 490, 507, 628, 719
AlwI GGATC 1 cut(s) 406
AoxI GGCC 1 cut(s) 522
ApeKI GCWGC 1 cut(s) 181
ApoI RAATTY 2 cut(s) 451, 464
AsiGI ACCGGT 1 cut(s) 333
Asp700I GAANNNNTTC 1 cut(s) 452
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 547, 565
AvaII GGWCC 1 cut(s) 4
AxyI CCTNAGG 1 cut(s) 507
BanII GRGCYC 1 cut(s) 369
BauI CACGAG 3 cut(s) 317, 368, 751
BbsI GAAGAC 2 cut(s) 122, 412
Bbv12I GWGCWC 2 cut(s) 72, 369
BbvI GCAGC 1 cut(s) 168
BccI CCATC 1 cut(s) 304
BceAI ACGGC 1 cut(s) 205
BcgI CGANNNNNNTGC 1 cut(s) 799
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 5 cut(s) 264, 490, 507, 628, 719
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 424
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 4
BmgBI CACGTC 1 cut(s) 445
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 6, 516
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 1 cut(s) 601
BpiI GAAGAC 2 cut(s) 122, 412
BplI GAGNNNNNCTC 2 cut(s) 487, 519
BpuEI CTTGAG 1 cut(s) 238
BsaBI GATNNNNATC 1 cut(s) 600
BsaI GGTCTC 2 cut(s) 264, 719
BsaJI CCNNGG 3 cut(s) 150, 169, 187
BsaWI WCCGGW 1 cut(s) 333
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 340, 531
Bse118I RCCGGY 2 cut(s) 333, 566
Bse1I ACTGG 1 cut(s) 356
Bse21I CCTNAGG 1 cut(s) 507
Bse8I GATNNNNATC 1 cut(s) 600
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 3 cut(s) 150, 169, 187
BseGI GGATG 1 cut(s) 616
BseJI GATNNNNATC 1 cut(s) 600
BseLI CCNNNNNNNGG 3 cut(s) 175, 340, 531
BseMII CTCAG 1 cut(s) 591
BseNI ACTGG 1 cut(s) 356
BseRI GAGGAG 6 cut(s) 9, 12, 15, 51, 81, 759
BseXI GCAGC 1 cut(s) 168
BsgI GTGCAG 1 cut(s) 512
BshFI GGCC 1 cut(s) 524
BshTI ACCGGT 1 cut(s) 333
BsiHKAI GWGCWC 2 cut(s) 72, 369
BsiSI CCGG 2 cut(s) 334, 567
BslFI GGGAC 1 cut(s) 638
BslI CCNNNNNNNGG 3 cut(s) 175, 340, 531
BsmAI GTCTC 5 cut(s) 264, 490, 507, 628, 719
BsmFI GGGAC 1 cut(s) 638
BsnI GGCC 1 cut(s) 524
Bso31I GGTCTC 2 cut(s) 264, 719
Bsp1286I GDGCHC 2 cut(s) 72, 369
Bsp143I GATC 2 cut(s) 321, 411
BspACI CCGC 2 cut(s) 122, 808
BspANI GGCC 1 cut(s) 524
BspCNI CTCAG 1 cut(s) 590
BspLI GGNNCC 2 cut(s) 6, 516
BspPI GGATC 1 cut(s) 406
BspTNI GGTCTC 2 cut(s) 264, 719
BsrFI RCCGGY 2 cut(s) 333, 566
BsrI ACTGG 1 cut(s) 356
BssAI RCCGGY 2 cut(s) 333, 566
BssECI CCNNGG 3 cut(s) 150, 169, 187
BssMI GATC 2 cut(s) 321, 411
BssSI CACGAG 3 cut(s) 317, 368, 751
Bst2BI CACGAG 3 cut(s) 317, 368, 751
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 3 cut(s) 409, 490, 501
Bst6I CTCTTC 3 cut(s) 99, 117, 290
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 507, 577
BstDSI CCRYGG 1 cut(s) 187
BstF5I GGATG 1 cut(s) 616
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 2 cut(s) 324, 414
BstMAI GTCTC 5 cut(s) 264, 490, 507, 628, 719
BstMBI GATC 2 cut(s) 321, 411
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 424
BstV1I GCAGC 1 cut(s) 168
BstV2I GAAGAC 2 cut(s) 122, 412
Bsu36I CCTNAGG 1 cut(s) 507
BsuRI GGCC 1 cut(s) 524
BtgI CCRYGG 1 cut(s) 187
BtrI CACGTC 1 cut(s) 445
BtsCI GGATG 1 cut(s) 616
BtsIMutI CAGTG 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 106
CfoI GCGC 1 cut(s) 186
Cfr10I RCCGGY 2 cut(s) 333, 566
Cfr13I GGNCC 1 cut(s) 4
CspAI ACCGGT 1 cut(s) 333
CviAII CATG 1 cut(s) 203
DdeI CTNAG 2 cut(s) 507, 577
DpnI GATC 2 cut(s) 323, 413
DpnII GATC 2 cut(s) 321, 411
EaeI YGGCCR 1 cut(s) 522
Eam1104I CTCTTC 3 cut(s) 99, 117, 290
EarI CTCTTC 3 cut(s) 99, 117, 290
Ecl136II GAGCTC 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 369
Eco31I GGTCTC 2 cut(s) 264, 719
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 98
Eco81I CCTNAGG 1 cut(s) 507
EcoICRI GAGCTC 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 369
FaeI CATG 1 cut(s) 206
FaiI YATR 6 cut(s) 102, 204, 482, 521, 646, 728
FalI AAGNNNNNCTT 2 cut(s) 554, 586
FaqI GGGAC 1 cut(s) 638
FatI CATG 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 182
FokI GGATG 1 cut(s) 623
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 1 cut(s) 182
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 182
HaeIII GGCC 1 cut(s) 524
HapII CCGG 2 cut(s) 334, 567
HhaI GCGC 1 cut(s) 186
Hin1II CATG 1 cut(s) 206
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 5 cut(s) 38, 199, 294, 344, 766
HpaII CCGG 2 cut(s) 334, 567
HphI GGTGA 2 cut(s) 547, 565
Hpy166II GTNNAC 3 cut(s) 235, 538, 586
Hpy188I TCNGA 5 cut(s) 170, 331, 343, 349, 580
Hpy188III TCNNGA 7 cut(s) 35, 42, 196, 289, 319, 370, 623
Hpy8I GTNNAC 3 cut(s) 235, 538, 586
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 4 cut(s) 284, 385, 389, 658
HpyCH4III ACNGT 3 cut(s) 409, 490, 501
HpyCH4IV ACGT 5 cut(s) 237, 444, 529, 627, 648
HpyCH4V TGCA 2 cut(s) 227, 493
HpyF3I CTNAG 2 cut(s) 507, 577
HpySE526I ACGT 5 cut(s) 237, 444, 529, 627, 648
Hsp92II CATG 1 cut(s) 206
HspAI GCGC 1 cut(s) 184
Kzo9I GATC 2 cut(s) 321, 411
LmnI GCTCC 2 cut(s) 75, 178
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 1 cut(s) 601
MaeI CTAG 1 cut(s) 12
MaeII ACGT 5 cut(s) 237, 444, 529, 627, 648
MalI GATC 2 cut(s) 323, 413
MboI GATC 2 cut(s) 321, 411
MboII GAAGA 8 cut(s) 86, 104, 122, 277, 316, 385, 412, 685
MhlI GDGCHC 2 cut(s) 72, 369
MluCI AATT 5 cut(s) 222, 451, 464, 668, 721
MlyI GAGTC 3 cut(s) 208, 353, 760
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 3 cut(s) 359, 630, 737
MspI CCGG 2 cut(s) 334, 567
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
NdeII GATC 2 cut(s) 321, 411
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 2 cut(s) 6, 516
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 2 cut(s) 38, 294
PinAI ACCGGT 1 cut(s) 333
PkrI GCNGC 1 cut(s) 183
PleI GAGTC 3 cut(s) 207, 352, 760
PpsI GAGTC 3 cut(s) 207, 352, 760
Psp124BI GAGCTC 1 cut(s) 369
Psp1406I AACGTT 2 cut(s) 237, 529
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 6, 516
PspPI GGNCC 1 cut(s) 4
SacI GAGCTC 1 cut(s) 369
SaqAI TTAA 3 cut(s) 359, 630, 737
SatI GCNGC 1 cut(s) 182
Sau3AI GATC 2 cut(s) 321, 411
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 3 cut(s) 208, 353, 760
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 2 cut(s) 72, 369
SfaNI GCATC 1 cut(s) 601
SfcI CTRYAG 1 cut(s) 424
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
Sse9I AATT 5 cut(s) 222, 451, 464, 668, 721
SsiI CCGC 2 cut(s) 122, 808
SspI AATATT 1 cut(s) 741
SspMI CTAG 1 cut(s) 12
SstI GAGCTC 1 cut(s) 369
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 3 cut(s) 409, 490, 501
TaiI ACGT 5 cut(s) 240, 447, 532, 630, 651
TaqI TCGA 1 cut(s) 297
TasI AATT 5 cut(s) 222, 451, 464, 668, 721
TfiI GAWTC 2 cut(s) 38, 294
Tru1I TTAA 3 cut(s) 359, 630, 737
Tru9I TTAA 3 cut(s) 359, 630, 737
TscAI CASTG 1 cut(s) 414
TseI GCWGC 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 232, 275, 715
TspRI CASTG 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 2 cut(s) 451, 464
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.