AT4G19925

RESISTANCE protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0023728
Physical Location & Seq
Reverse (-)
10799732 .. 10800792
1061 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19925.1

Sequence Viewer

Length: 750 bp
ATGACGATGCCAGCTTTCCGACGACGACCACGCCCTCAGATATATATCAGTTTTCAAGGGAACGACCTGCGAAAAGGCTTTGTCAGCCATGTCGTGAAGGCCTTAAAAGACGCACGGGTCAACGTTTTCGTAGATAACGATCATGATCAATGGGAAAGGAGAGGCCCTCATCATCATGATGACCACCTTTTCGTCAGGAGGATCCACAACTCGAAACTCGCTCTCGTGATCTTCTCTGACCAATACGCAGAGTCACAACAGTGCTTGAATGAGCTGACGACGATCCATGAGCGCGTGGCCGAAGGGAAACTCATGGTGATCCCCATCTTCTACAAAGTGAACATCGAAGAAGTTAACAATTTGGAGGGACGATTTGGTAAATGTTTTGATGAAATGGTGAGGACACAAGGGAGACAGAATCATCAGTTGACCCATCACATCGTTGGATGTCTAAGGTCTATTGCTAGAAAGCCTAGCTTCACGTCAGGATACTATAGCAACGATAGTGATCTCGTGGAGGCGATCATTCAGGGTATTAAGAAAAAAATACCTTATATATCGGCAAAACAAACGATTGGAGAAGAAGTTTCGGCAGAGCTTCTTTCTGCTTCGGTTGTTGCGGCTTTGTGTTTTTACTTTATCCCTATTTCTGTGTTCCCGGATTTGGGTTTCTTCATTAGCCCACGTTGGTATCTAGCTGTTATGTTGTTGTTTGTTGTCCGACATAGTCTCCGATCTATTCAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIR

Protein Analysis

249

Amino Acids

28.8

Weight (kDa)

9.3

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 13 - 182 2.9e-27 TIR domain
TIR_2 PF13676 14 - 115 1.5e-10 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023728)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19910 AT4G19920 AT4G19925

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
Acc36I ACCTGC 1 cut(s) 75
AccII CGCG 1 cut(s) 294
AciI CCGC 1 cut(s) 620
AclI AACGTT 1 cut(s) 123
AclWI GGATC 4 cut(s) 196, 209, 277, 313
AcoI YGGCCR 1 cut(s) 297
AfiI CCNNNNNNNGG 2 cut(s) 664, 665
AgsI TTSAA 2 cut(s) 56, 268
AjiI CACGTC 1 cut(s) 483
AleI CACNNNNGTG 1 cut(s) 259
AluBI AGCT 5 cut(s) 14, 274, 477, 598, 698
AluI AGCT 5 cut(s) 14, 274, 477, 598, 698
Alw26I GTCTC 2 cut(s) 406, 734
AlwI GGATC 4 cut(s) 196, 209, 277, 313
AoxI GGCC 3 cut(s) 99, 163, 297
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 659
AsuHPI GGTGA 2 cut(s) 328, 409
BaeI ACNNNNGTAYC 2 cut(s) 674, 707
BamHI GGATCC 1 cut(s) 201
BauI CACGAG 2 cut(s) 224, 512
BccI CCATC 2 cut(s) 332, 441
BciVI GTATCC 1 cut(s) 482
BclI TGATCA 1 cut(s) 145
BcnI CCSGG 1 cut(s) 659
BcoDI GTCTC 2 cut(s) 406, 734
BfaI CTAG 3 cut(s) 465, 474, 695
BfmI CTRYAG 1 cut(s) 493
BfuAI ACCTGC 1 cut(s) 75
BfuI GTATCC 1 cut(s) 482
BisI GCNGC 1 cut(s) 621
BlsI GCNGC 1 cut(s) 622
Bme1390I CCNGG 1 cut(s) 659
BmgBI CACGTC 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 659
BplI GAGNNNNNCTC 2 cut(s) 151, 183
BpuMI CCSGG 1 cut(s) 659
BsaBI GATNNNNATC 5 cut(s) 44, 138, 144, 323, 507
BsaXI ACNNNNNCTCC 4 cut(s) 570, 600, 714, 744
Bsc4I CCNNNNNNNGG 2 cut(s) 664, 665
Bse8I GATNNNNATC 5 cut(s) 44, 138, 144, 323, 507
BseGI GGATG 1 cut(s) 452
BseJI GATNNNNATC 5 cut(s) 44, 138, 144, 323, 507
BseLI CCNNNNNNNGG 2 cut(s) 664, 665
BseMII CTCAG 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 3 cut(s) 101, 165, 299
BsiSI CCGG 1 cut(s) 659
BslFI GGGAC 1 cut(s) 381
BslI CCNNNNNNNGG 2 cut(s) 664, 665
BsmAI GTCTC 2 cut(s) 406, 734
BsmFI GGGAC 1 cut(s) 381
BsnI GGCC 3 cut(s) 101, 165, 299
Bsp143I GATC 9 cut(s) 139, 145, 201, 228, 282, 318, 508, 522, 734
BspACI CCGC 1 cut(s) 620
BspANI GGCC 3 cut(s) 101, 165, 299
BspCNI CTCAG 1 cut(s) 49
BspFNI CGCG 1 cut(s) 294
BspHI TCATGA 2 cut(s) 142, 175
BspLI GGNNCC 1 cut(s) 203
BspMI ACCTGC 1 cut(s) 75
BspPI GGATC 4 cut(s) 196, 209, 277, 313
BssMI GATC 9 cut(s) 139, 145, 201, 228, 282, 318, 508, 522, 734
BssSI CACGAG 2 cut(s) 224, 512
Bst2BI CACGAG 2 cut(s) 224, 512
Bst4CI ACNGT 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 36, 452
BstF5I GGATG 1 cut(s) 452
BstFNI CGCG 1 cut(s) 294
BstHHI GCGC 1 cut(s) 294
BstKTI GATC 9 cut(s) 142, 148, 204, 231, 285, 321, 511, 525, 737
BstMAI GTCTC 2 cut(s) 406, 734
BstMBI GATC 9 cut(s) 139, 145, 201, 228, 282, 318, 508, 522, 734
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 657
BstSFI CTRYAG 1 cut(s) 493
BstUI CGCG 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
BsuI GTATCC 1 cut(s) 482
BsuRI GGCC 3 cut(s) 101, 165, 299
BtrI CACGTC 1 cut(s) 483
BtsCI GGATG 1 cut(s) 452
BtsIMutI CAGTG 1 cut(s) 266
BveI ACCTGC 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 12
CciI TCATGA 2 cut(s) 142, 175
CfoI GCGC 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 164
CseI GACGC 1 cut(s) 119
CviAII CATG 5 cut(s) 89, 143, 176, 287, 313
DdeI CTNAG 2 cut(s) 36, 452
DpnI GATC 9 cut(s) 141, 147, 203, 230, 284, 320, 510, 524, 736
DpnII GATC 9 cut(s) 139, 145, 201, 228, 282, 318, 508, 522, 734
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 297
Eco147I AGGCCT 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 164
FaeI CATG 5 cut(s) 92, 146, 179, 290, 316
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FaqI GGGAC 1 cut(s) 381
FatI CATG 5 cut(s) 88, 142, 175, 286, 312
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 621
FokI GGATG 1 cut(s) 459
Fsp4HI GCNGC 1 cut(s) 621
FspBI CTAG 3 cut(s) 465, 474, 695
GlaI GCGC 1 cut(s) 293
GluI GCNGC 1 cut(s) 621
HaeIII GGCC 3 cut(s) 101, 165, 299
HapII CCGG 1 cut(s) 659
HgaI GACGC 1 cut(s) 119
HhaI GCGC 1 cut(s) 294
Hin1II CATG 5 cut(s) 92, 146, 179, 290, 316
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HincII GTYRAC 3 cut(s) 121, 355, 429
HindII GTYRAC 3 cut(s) 121, 355, 429
HinfI GANTC 2 cut(s) 251, 418
HpaI GTTAAC 1 cut(s) 355
HpaII CCGG 1 cut(s) 659
HphI GGTGA 2 cut(s) 328, 409
Hpy166II GTNNAC 4 cut(s) 121, 340, 355, 429
Hpy188I TCNGA 6 cut(s) 20, 39, 238, 722, 734, 744
Hpy188III TCNNGA 6 cut(s) 94, 143, 176, 196, 226, 486
Hpy8I GTNNAC 4 cut(s) 121, 340, 355, 429
Hpy99I CGWCG 3 cut(s) 24, 27, 283
HpyAV CCTTC 2 cut(s) 91, 296
HpyCH4III ACNGT 1 cut(s) 261
HpyCH4IV ACGT 3 cut(s) 123, 482, 685
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 2 cut(s) 36, 452
HpySE526I ACGT 3 cut(s) 123, 482, 685
Hsp92II CATG 5 cut(s) 92, 146, 179, 290, 316
HspAI GCGC 1 cut(s) 292
Ksp22I TGATCA 1 cut(s) 145
KspAI GTTAAC 1 cut(s) 355
Kzo9I GATC 9 cut(s) 139, 145, 201, 228, 282, 318, 508, 522, 734
LpnPI CCDG 6 cut(s) 24, 80, 181, 471, 515, 672
MaeI CTAG 3 cut(s) 465, 474, 695
MaeII ACGT 3 cut(s) 123, 482, 685
MaeIII GTNAC 1 cut(s) 252
MalI GATC 9 cut(s) 141, 147, 203, 230, 284, 320, 510, 524, 736
MboI GATC 9 cut(s) 139, 145, 201, 228, 282, 318, 508, 522, 734
MboII GAAGA 5 cut(s) 223, 319, 359, 593, 664
MflI RGATCY 1 cut(s) 201
MluCI AATT 1 cut(s) 358
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 3 cut(s) 43, 424, 745
MnlI CCTC 8 cut(s) 45, 155, 177, 192, 358, 393, 511, 738
MseI TTAA 3 cut(s) 104, 354, 537
MslI CAYNNNNRTG 3 cut(s) 174, 177, 259
MspI CCGG 1 cut(s) 659
MspR9I CCNGG 1 cut(s) 659
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 1 cut(s) 84
NciI CCSGG 1 cut(s) 659
NdeII GATC 9 cut(s) 139, 145, 201, 228, 282, 318, 508, 522, 734
NlaIII CATG 5 cut(s) 92, 146, 179, 290, 316
NlaIV GGNNCC 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 252
OliI CACNNNNGTG 1 cut(s) 259
PagI TCATGA 2 cut(s) 142, 175
PceI AGGCCT 1 cut(s) 101
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PfeI GAWTC 1 cut(s) 418
PflFI GACNNNGTC 1 cut(s) 726
PfoI TCCNGGA 1 cut(s) 657
PkrI GCNGC 1 cut(s) 622
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
Psp1406I AACGTT 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 203
PspPI GGNCC 1 cut(s) 164
PsuI RGATCY 1 cut(s) 201
PsyI GACNNNGTC 1 cut(s) 726
RseI CAYNNNNRTG 3 cut(s) 174, 177, 259
SaqAI TTAA 3 cut(s) 104, 354, 537
SatI GCNGC 1 cut(s) 621
Sau3AI GATC 9 cut(s) 139, 145, 201, 228, 282, 318, 508, 522, 734
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 659
SfcI CTRYAG 1 cut(s) 493
SmiMI CAYNNNNRTG 3 cut(s) 174, 177, 259
Sse9I AATT 1 cut(s) 358
SseBI AGGCCT 1 cut(s) 101
SsiI CCGC 1 cut(s) 620
SspMI CTAG 3 cut(s) 465, 474, 695
StuI AGGCCT 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 657
TaaI ACNGT 1 cut(s) 261
TaiI ACGT 3 cut(s) 126, 485, 688
TaqI TCGA 2 cut(s) 212, 345
TasI AATT 1 cut(s) 358
TauI GCSGC 1 cut(s) 623
TfiI GAWTC 1 cut(s) 418
Tru1I TTAA 3 cut(s) 104, 354, 537
Tru9I TTAA 3 cut(s) 104, 354, 537
TscAI CASTG 1 cut(s) 266
TseFI GTSAC 1 cut(s) 252
Tsp45I GTSAC 1 cut(s) 252
TspDTI ATGAA 2 cut(s) 405, 664
TspRI CASTG 1 cut(s) 266
Tth111I GACNNNGTC 1 cut(s) 726
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
XspI CTAG 3 cut(s) 465, 474, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.