AT4G22580

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014036
Physical Location & Seq
Reverse (-)
11889098 .. 11890808
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G22580.1

Sequence Viewer

Length: 1308 bp
ATGGCTTCCAAATCCACCGTCACAACATTGACCATCTTCTTCTTCTTCTTCTTCTTCTTCATCGAGCCTAAGGTTCAGTCTCAGCAAATCTCAGCCGTTGATTCAGAATGCACCAACCGTTGGATTCACATCCGAACACTCCCATCACGATTCAATCTCGATCTTCTCTCAACTTGTAATCGTTACCCAATCACCGACGATCTTTGCCCTTACTTAGCCAATCACGGACTCGGCCCAAAAACCCATACCCGTACCCGAAGCTGGTATCGAACCGACCCGTTACTTCTCGAACTCATTTTCCACCGTCGGATTCTCGAATATCCATGTCTCACACCCGACCCGAATCTCGCCTCCGCAATCTACCTCCCTTACTACGCCGGCATCGATTCTCTCCGTTATCTCTACGGACCCGATTTAAACTCAAGCGCTGATCACGGGTCGGATCTTCTCGAGTTTTTGACCCGTGATCAACCCGAGATCTGGTCTCGTCGCTCCGGTCATGATCATTTCCTCGTTATGGCTCGACCCGCTTGGGATTTCTCTCAGCCGTTGACCGTTGACCCTCCGATTTGGGGAACGTCGTTTCTAGAACGCCGTGAGTTTTTCAATCTAACGGCGTTAACTCTCGAATCTCGTTACTGGCCGTGGCAAGAACAAGCCGTTCCTTATCCGACGTCGTTTCATCCACACAGCTTGCCGTTTTTGGAATCGTGGATCCGTCGTGTCCGTCGCTCACGGCGAACTTCTCTTATGCTATTCGCCGGCGGTGGTGGTACCTCCTCTTCTCCTAACATCCGTCGTAGTATCCGCTTAGAGTGCACTAGCATAAACGCAACACAATCGGATAATAAAATCTGCGATTTCGTCGATTGTTCTAACGGAATCTGTGAGCATGATCCGATTAGATTCATGAGACCGATGTTACAATCATCGTTTTGTTTACAACCACCGGGAGATACACCAACAAGGAAAGCTACATTCGACGGAATCATCGCCGGATGTATACCGGTGTTTTTCGAGGATCAAACGGCGAAAATGCAGTACAAATGGCATTTACCGGAGTCCGAATTCGCGGAGTTTTCGGTTACGATTCCGAAGGAAGATGTAGTGTTTAGAGGAGTTAGAATACAAGATGTGTTGATGAGTATACCTAAAGAAGAAGTTACTAGAATGAGAGAAAGAGTTATAGAGATGATGCCTAGAGTTATGTATAGAAGACATGGAGCTTCAATGGGATTGATGAATAAGAAAGATGCTGTTGATATTGCTATTGATGGAGTTTTGGACAGGATTATATCTAGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

435

Amino Acids

50.36

Weight (kDa)

7.61

Isoelectric Point (pI)

60.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 39 - 371 2.7e-66 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22580
fragaria_vesca FvH4_5g00260
malus_domestica MD04G1084800.v1.1 MD09G1022700.v1.1
prunus_persica Prupe.5G075200_v2.0.a1
pyrus_communis pycom04g07570 pycom111g01900
rosa_chinensis RchiOBHm_Chr7g0202381
rosa_laevigata RLG00000003605
rosa_multiflora Rmu_co8347103.1_g000001 Rmu_sc0000266.1_g000011
rosa_rugosa Rorug07G0070400
rosa_samantha Rh7AG197700 Rh7BG198700 Rh7CG208900 Rh7DG204600
rosa_wichuraiana Rw7G017330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 677
Acc65I GGTACC 1 cut(s) 773
AccB1I GGYRCC 1 cut(s) 773
AccB7I CCANNNNNTGG 1 cut(s) 120
AccI GTMKAC 2 cut(s) 1003, 1147
AccII CGCG 1 cut(s) 1073
AciI CCGC 5 cut(s) 354, 528, 765, 808, 1073
AclWI GGATC 5 cut(s) 450, 709, 722, 890, 1029
AcoI YGGCCR 1 cut(s) 641
AcsI RAATTY 1 cut(s) 1067
AcyI GRCGYC 1 cut(s) 674
AfaI GTAC 3 cut(s) 253, 775, 1043
AfeI AGCGCT 1 cut(s) 427
AfiI CCNNNNNNNGG 5 cut(s) 120, 261, 480, 517, 572
AgeI ACCGGT 1 cut(s) 1006
AgsI TTSAA 3 cut(s) 154, 607, 1230
AloI GAACNNNNNNTCC 2 cut(s) 282, 314
AluBI AGCT 4 cut(s) 261, 693, 974, 1226
AluI AGCT 4 cut(s) 261, 693, 974, 1226
Alw21I GWGCWC 1 cut(s) 821
Alw26I GTCTC 4 cut(s) 84, 332, 489, 907
Alw44I GTGCAC 1 cut(s) 817
AlwI GGATC 5 cut(s) 450, 709, 722, 890, 1029
Ama87I CYCGRG 2 cut(s) 449, 473
Aor51HI AGCGCT 1 cut(s) 427
AoxI GGCC 2 cut(s) 232, 641
ApaLI GTGCAC 1 cut(s) 817
ApoI RAATTY 1 cut(s) 1067
ArsI GACNNNNNNTTYG 1 cut(s) 35
AsiGI ACCGGT 1 cut(s) 1006
Asp718I GGTACC 1 cut(s) 773
AspLEI GCGC 1 cut(s) 428
AspS9I GGNCC 2 cut(s) 233, 407
AsuC2I CCSGG 1 cut(s) 951
AsuHPI GGTGA 1 cut(s) 184
AvaI CYCGRG 2 cut(s) 449, 473
AvaII GGWCC 1 cut(s) 407
AxyI CCTNAGG 1 cut(s) 69
BaeGI GKGCMC 1 cut(s) 821
BamHI GGATCC 1 cut(s) 714
BanI GGYRCC 1 cut(s) 773
BarI GAAGNNNNNNTAC 2 cut(s) 766, 798
BbsI GAAGAC 1 cut(s) 1222
Bbv12I GWGCWC 1 cut(s) 821
BccI CCATC 3 cut(s) 41, 151, 1268
BceAI ACGGC 9 cut(s) 80, 532, 579, 628, 630, 644, 682, 752, 1044
BcgI CGANNNNNNTGC 2 cut(s) 822, 856
BciVI GTATCC 1 cut(s) 815
BclI TGATCA 3 cut(s) 430, 466, 502
BcnI CCSGG 1 cut(s) 951
BcoDI GTCTC 4 cut(s) 84, 332, 489, 907
BfaI CTAG 5 cut(s) 587, 822, 1167, 1200, 1299
BfoI RGCGCY 1 cut(s) 429
BfuI GTATCC 1 cut(s) 815
BglII AGATCT 1 cut(s) 477
Bme1390I CCNGG 1 cut(s) 951
Bme18I GGWCC 1 cut(s) 407
BmeT110I CYCGRG 2 cut(s) 449, 473
BmgT120I GGNCC 2 cut(s) 233, 407
BmiI GGNNCC 3 cut(s) 409, 716, 775
BmrFI CCNGG 1 cut(s) 951
BmsI GCATC 3 cut(s) 390, 1185, 1243
BpiI GAAGAC 1 cut(s) 1222
BpuEI CTTGAG 1 cut(s) 406
BpuMI CCSGG 1 cut(s) 951
Bsa29I ATCGAT 1 cut(s) 384
BsaBI GATNNNNATC 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 674
BsaI GGTCTC 2 cut(s) 489, 907
BsaJI CCNNGG 1 cut(s) 644
BsaWI WCCGGW 3 cut(s) 494, 1006, 1057
Bsc4I CCNNNNNNNGG 5 cut(s) 120, 261, 480, 517, 572
Bse118I RCCGGY 3 cut(s) 377, 761, 1006
Bse1I ACTGG 1 cut(s) 644
Bse21I CCTNAGG 1 cut(s) 69
Bse8I GATNNNNATC 1 cut(s) 128
BseCI ATCGAT 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 644
BseGI GGATG 4 cut(s) 129, 682, 792, 1004
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 5 cut(s) 120, 261, 480, 517, 572
BseMII CTCAG 3 cut(s) 95, 105, 557
BseNI ACTGG 1 cut(s) 644
BseRI GAGGAG 2 cut(s) 769, 1131
BseSI GKGCMC 1 cut(s) 821
Bsh1236I CGCG 1 cut(s) 1073
BshFI GGCC 2 cut(s) 234, 643
BshNI GGYRCC 1 cut(s) 773
BshTI ACCGGT 1 cut(s) 1006
BshVI ATCGAT 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 821
BsiHKCI CYCGRG 2 cut(s) 449, 473
BsiSI CCGG 7 cut(s) 378, 495, 762, 950, 996, 1007, 1058
BslI CCNNNNNNNGG 5 cut(s) 120, 261, 480, 517, 572
BsmAI GTCTC 4 cut(s) 84, 332, 489, 907
BsmI GAATGC 1 cut(s) 113
BsnI GGCC 2 cut(s) 234, 643
Bso31I GGTCTC 2 cut(s) 489, 907
BsoBI CYCGRG 2 cut(s) 449, 473
Bsp1286I GDGCHC 1 cut(s) 821
BspACI CCGC 5 cut(s) 354, 528, 765, 808, 1073
BspANI GGCC 2 cut(s) 234, 643
BspCNI CTCAG 3 cut(s) 94, 104, 556
BspDI ATCGAT 1 cut(s) 384
BspFNI CGCG 1 cut(s) 1073
BspHI TCATGA 2 cut(s) 499, 909
BspLI GGNNCC 3 cut(s) 409, 716, 775
BspPI GGATC 5 cut(s) 450, 709, 722, 890, 1029
BspT107I GGYRCC 1 cut(s) 773
BspTNI GGTCTC 2 cut(s) 489, 907
BsrFI RCCGGY 3 cut(s) 377, 761, 1006
BsrI ACTGG 1 cut(s) 644
BssAI RCCGGY 3 cut(s) 377, 761, 1006
BssECI CCNNGG 1 cut(s) 644
BssNAI GTATAC 2 cut(s) 1004, 1148
BssNI GRCGYC 1 cut(s) 674
Bst1107I GTATAC 2 cut(s) 1004, 1148
Bst4CI ACNGT 4 cut(s) 19, 119, 305, 556
Bst6I CTCTTC 1 cut(s) 787
BstACI GRCGYC 1 cut(s) 674
BstC8I GCNNGC 3 cut(s) 379, 695, 763
BstDEI CTNAG 6 cut(s) 69, 81, 91, 214, 543, 811
BstDSI CCRYGG 1 cut(s) 644
BstF5I GGATG 4 cut(s) 129, 682, 792, 1004
BstFNI CGCG 1 cut(s) 1073
BstH2I RGCGCY 1 cut(s) 429
BstHHI GCGC 1 cut(s) 428
BstMAI GTCTC 4 cut(s) 84, 332, 489, 907
BstMWI GCNNNNNNNGC 2 cut(s) 527, 816
BstSCI CCNGG 1 cut(s) 949
BstSLI GKGCMC 1 cut(s) 821
BstUI CGCG 1 cut(s) 1073
BstV2I GAAGAC 1 cut(s) 1222
BstX2I RGATCY 3 cut(s) 442, 477, 714
BstYI RGATCY 3 cut(s) 442, 477, 714
BstZ17I GTATAC 2 cut(s) 1004, 1148
Bsu15I ATCGAT 1 cut(s) 384
Bsu36I CCTNAGG 1 cut(s) 69
BsuI GTATCC 1 cut(s) 815
BsuRI GGCC 2 cut(s) 234, 643
BsuTUI ATCGAT 1 cut(s) 384
BtgI CCRYGG 1 cut(s) 644
BtgZI GCGATG 1 cut(s) 976
BtsCI GGATG 4 cut(s) 129, 682, 792, 1004
Cac8I GCNNGC 3 cut(s) 379, 695, 763
CciI TCATGA 2 cut(s) 499, 909
CfoI GCGC 1 cut(s) 428
Cfr10I RCCGGY 3 cut(s) 377, 761, 1006
Cfr13I GGNCC 2 cut(s) 233, 407
ClaI ATCGAT 1 cut(s) 384
Csp6I GTAC 3 cut(s) 252, 774, 1042
CspAI ACCGGT 1 cut(s) 1006
CspCI CAANNNNNGTGG 2 cut(s) 675, 710
CviAII CATG 5 cut(s) 324, 500, 893, 910, 1220
CviQI GTAC 3 cut(s) 252, 774, 1042
DdeI CTNAG 6 cut(s) 69, 81, 91, 214, 543, 811
DraI TTTAAA 1 cut(s) 417
EaeI YGGCCR 1 cut(s) 641
Eam1104I CTCTTC 1 cut(s) 787
EarI CTCTTC 1 cut(s) 787
Eco31I GGTCTC 2 cut(s) 489, 907
Eco47I GGWCC 1 cut(s) 407
Eco47III AGCGCT 1 cut(s) 427
Eco81I CCTNAGG 1 cut(s) 69
Eco88I CYCGRG 2 cut(s) 449, 473
EcoRI GAATTC 1 cut(s) 1067
FaeI CATG 5 cut(s) 327, 503, 896, 913, 1223
FatI CATG 5 cut(s) 323, 499, 892, 909, 1219
FauI CCCGC 1 cut(s) 535
FbaI TGATCA 3 cut(s) 430, 466, 502
FblI GTMKAC 2 cut(s) 1003, 1147
FokI GGATG 4 cut(s) 116, 669, 779, 1011
FspBI CTAG 5 cut(s) 587, 822, 1167, 1200, 1299
GlaI GCGC 1 cut(s) 427
HaeII RGCGCY 1 cut(s) 429
HaeIII GGCC 2 cut(s) 234, 643
HapII CCGG 7 cut(s) 378, 495, 762, 950, 996, 1007, 1058
HhaI GCGC 1 cut(s) 428
Hin1I GRCGYC 1 cut(s) 674
Hin1II CATG 5 cut(s) 327, 503, 896, 913, 1223
Hin6I GCGC 1 cut(s) 426
HinP1I GCGC 1 cut(s) 426
HincII GTYRAC 3 cut(s) 552, 559, 621
HindII GTYRAC 3 cut(s) 552, 559, 621
HpaI GTTAAC 1 cut(s) 621
HpaII CCGG 7 cut(s) 378, 495, 762, 950, 996, 1007, 1058
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 7 cut(s) 552, 559, 621, 819, 941, 1004, 1148
Hpy8I GTNNAC 7 cut(s) 552, 559, 621, 819, 941, 1004, 1148
HpyAV CCTTC 1 cut(s) 1090
HpyCH4III ACNGT 4 cut(s) 19, 119, 305, 556
HpyCH4IV ACGT 2 cut(s) 578, 674
HpyCH4V TGCA 3 cut(s) 111, 819, 1039
HpyF10VI GCNNNNNNNGC 2 cut(s) 527, 816
HpyF3I CTNAG 6 cut(s) 69, 81, 91, 214, 543, 811
HpySE526I ACGT 2 cut(s) 578, 674
Hsp92I GRCGYC 1 cut(s) 674
Hsp92II CATG 5 cut(s) 327, 503, 896, 913, 1223
HspAI GCGC 1 cut(s) 426
KpnI GGTACC 1 cut(s) 777
KroI GCCGGC 2 cut(s) 377, 761
KroNI GCCGGC 2 cut(s) 379, 763
Ksp22I TGATCA 3 cut(s) 430, 466, 502
KspAI GTTAAC 1 cut(s) 621
LmnI GCTCC 2 cut(s) 497, 1223
LweI GCATC 3 cut(s) 390, 1185, 1243
MaeI CTAG 5 cut(s) 587, 822, 1167, 1200, 1299
MaeII ACGT 2 cut(s) 578, 674
MaeIII GTNAC 7 cut(s) 19, 182, 279, 635, 921, 1084, 1162
MflI RGATCY 3 cut(s) 442, 477, 714
MhlI GDGCHC 1 cut(s) 821
MluCI AATT 1 cut(s) 1067
MlyI GAGTC 2 cut(s) 222, 1070
MmeI TCCRAC 4 cut(s) 101, 287, 420, 695
MnlI CCTC 8 cut(s) 361, 374, 521, 573, 787, 790, 1012, 1109
MreI CGCCGGCG 1 cut(s) 761
MroNI GCCGGC 2 cut(s) 377, 761
MseI TTAA 2 cut(s) 416, 620
MspI CCGG 7 cut(s) 378, 495, 762, 950, 996, 1007, 1058
MspR9I CCNGG 1 cut(s) 951
Mva1269I GAATGC 1 cut(s) 113
MvnI CGCG 1 cut(s) 1073
MwoI GCNNNNNNNGC 2 cut(s) 527, 816
NaeI GCCGGC 2 cut(s) 379, 763
NciI CCSGG 1 cut(s) 951
NgoMIV GCCGGC 2 cut(s) 377, 761
NlaIII CATG 5 cut(s) 327, 503, 896, 913, 1223
NlaIV GGNNCC 3 cut(s) 409, 716, 775
NmeAIII GCCGAG 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 19
PaeR7I CTCGAG 1 cut(s) 449
PagI TCATGA 2 cut(s) 499, 909
PcsI WCGNNNNNNNCGW 2 cut(s) 381, 736
PctI GAATGC 1 cut(s) 113
PdiI GCCGGC 2 cut(s) 379, 763
PflMI CCANNNNNTGG 1 cut(s) 120
PinAI ACCGGT 1 cut(s) 1006
PleI GAGTC 2 cut(s) 222, 1069
PpsI GAGTC 2 cut(s) 222, 1069
PspN4I GGNNCC 3 cut(s) 409, 716, 775
PspPI GGNCC 2 cut(s) 233, 407
PsuI RGATCY 3 cut(s) 442, 477, 714
RsaI GTAC 3 cut(s) 253, 775, 1043
RsaNI GTAC 3 cut(s) 252, 774, 1042
SaqAI TTAA 2 cut(s) 416, 620
Sau96I GGNCC 2 cut(s) 233, 407
SchI GAGTC 2 cut(s) 222, 1070
ScrFI CCNGG 1 cut(s) 951
SduI GDGCHC 1 cut(s) 821
SfaNI GCATC 3 cut(s) 390, 1185, 1243
Sfr274I CTCGAG 1 cut(s) 449
SgrAI CRCCGGYG 1 cut(s) 761
SinI GGWCC 1 cut(s) 407
SlaI CTCGAG 1 cut(s) 449
SmlI CTYRAG 2 cut(s) 421, 449
SmoI CTYRAG 2 cut(s) 421, 449
Sse9I AATT 1 cut(s) 1067
SsiI CCGC 5 cut(s) 354, 528, 765, 808, 1073
SspMI CTAG 5 cut(s) 587, 822, 1167, 1200, 1299
StyD4I CCNGG 1 cut(s) 949
TaaI ACNGT 4 cut(s) 19, 119, 305, 556
TaiI ACGT 2 cut(s) 581, 677
TaqII GACCGA 1 cut(s) 931
TasI AATT 1 cut(s) 1067
TatI WGTACW 1 cut(s) 1041
Tru1I TTAA 2 cut(s) 416, 620
Tru9I TTAA 2 cut(s) 416, 620
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 4 cut(s) 49, 671, 898, 1256
TspGWI ACGGA 8 cut(s) 240, 383, 420, 707, 716, 785, 894, 999
Van91I CCANNNNNTGG 1 cut(s) 120
VneI GTGCAC 1 cut(s) 817
VpaK11BI GGWCC 1 cut(s) 407
XapI RAATTY 1 cut(s) 1067
XbaI TCTAGA 2 cut(s) 586, 1298
XhoI CTCGAG 1 cut(s) 449
XmiI GTMKAC 2 cut(s) 1003, 1147
XspI CTAG 5 cut(s) 587, 822, 1167, 1200, 1299
ZraI GACGTC 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.