Prupe.5G075200_v2.0.a1

xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014036
Physical Location & Seq
Reverse (-)
8920681 .. 8922051
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G075200.1

Sequence Viewer

Length: 1089 bp
ATGCTGGAGCTCATTTTCCACCGTCGGATGCTCGAATACCCATGCCTCACCGCAGATCCCCAGGCCGCCGACGCCATCTACGTCCCTTACTACGCCGGCATCGACGCCCTCCACTACCTGTACGGCCCAGATTACAACTCCAGCTCCGAGCAGGGCCTCAATCTGTTCGAGTTCTTGACCACCGACTCGCCCGAGTCGTGGAATCGGAAAATGGGTCATGACCATTTCATGGTTCTGGCCCGACCCGCTTGGGATTTCTCTCAGCCGCTGGGAAACGACCCGCCTCTTTGGGGCACTTCGTTGCTCGAATTGCCGCAGTTTTACAATGTGACGGCTTTGACGGTCGAAGCTCGCGCCTGGCCCTGGCAGGAGCACGCCGTGCCTTACCCGACGTCGTTTCATCCGCCCAATTTGTCTCTGTTGGAGAGCTGGGTGCAGAGGGCGAGGAGGTCTCGGCGCACCACGCTTATGATGTTTGCCGGGGGTGGAGGGGTTGGACGTAATCCCACCATTAGGAGGAGCATTAGAAATGAGTGTGAAAATAACACCATGAACAAAAATGTCAAAAATGTTAACAATGTGGGCATGTATGGAAGTGGTGTTGGTGGGTTTTCAAAGCTCTGTGACGTTGTAGATTGCTCTAATGGGATTTGTGAGCATGATCCCATTCGGTTCATGAGGCCGATGTTGCAGGCAAGTTTTTGTTTGCAGCCTCCCGGGGACACCCCGACCAGGCGGTCCACCTTCGACAGCATTGTTGCCGGCTGCATTCCCGTGTTTTTTGAGGAATCGTCCGCTAGGGCGCAGTACCGGTGGCACCTGCCAGAGGATCAGTTCGGGGAGTTTTCGGTGTTTATAGCCAAGGAGGATGTGGTGTTCAAGGAGACAAGGATTTTGGATGTGCTTAGGAGCATACCAAGAGGGAAAGTCAGGAGAATGAGGGAGAGAGTGTTGGAGATGATACCAAGAATTATGTATAGGAAGCATGGAAGTTCAGTCGGTTTGAGAGCCAAGAAAGATGCTTTTGATATTGCAATTGAAGGTGTCTTGCAGAAGATTAAATCTAGAGGTCAAGTTTTTGCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

363

Amino Acids

41.31

Weight (kDa)

8.62

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22580
fragaria_vesca FvH4_5g00260
malus_domestica MD04G1084800.v1.1 MD09G1022700.v1.1
prunus_persica Prupe.5G075200_v2.0.a1
pyrus_communis pycom04g07570 pycom111g01900
rosa_chinensis RchiOBHm_Chr7g0202381
rosa_laevigata RLG00000003605
rosa_multiflora Rmu_co8347103.1_g000001 Rmu_sc0000266.1_g000011
rosa_rugosa Rorug07G0070400
rosa_samantha Rh7AG197700 Rh7BG198700 Rh7CG208900 Rh7DG204600
rosa_wichuraiana Rw7G017330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 828
AasI GACNNNNNNGTC 1 cut(s) 736
AatII GACGTC 1 cut(s) 395
Acc36I ACCTGC 1 cut(s) 828
AccB1I GGYRCC 1 cut(s) 816
AccB7I CCANNNNNTGG 1 cut(s) 229
AccII CGCG 1 cut(s) 354
AciI CCGC 9 cut(s) 51, 66, 246, 266, 281, 314, 404, 736, 795
AclWI GGATC 3 cut(s) 50, 656, 837
AcyI GRCGYC 3 cut(s) 72, 105, 392
AdeI CACNNNGTG 1 cut(s) 379
AfaI GTAC 2 cut(s) 122, 809
AfiI CCNNNNNNNGG 8 cut(s) 198, 229, 290, 363, 513, 516, 732, 826
AgeI ACCGGT 1 cut(s) 810
AgsI TTSAA 3 cut(s) 615, 880, 1040
AjnI CCWGG 4 cut(s) 60, 356, 362, 731
AloI GAACNNNNNNTCC 2 cut(s) 860, 892
AluBI AGCT 5 cut(s) 10, 144, 350, 429, 619
AluI AGCT 5 cut(s) 10, 144, 350, 429, 619
Alw21I GWGCWC 2 cut(s) 12, 375
Alw26I GTCTC 3 cut(s) 420, 456, 878
AlwI GGATC 3 cut(s) 50, 656, 837
AlwNI CAGNNNCTG 1 cut(s) 268
Ama87I CYCGRG 2 cut(s) 191, 716
AoxI GGCC 6 cut(s) 63, 124, 154, 237, 359, 680
ApeKI GCWGC 2 cut(s) 709, 765
ArsI GACNNNNNNTTYG 2 cut(s) 877, 909
AsiGI ACCGGT 1 cut(s) 810
AspLEI GCGC 3 cut(s) 356, 459, 805
AspS9I GGNCC 5 cut(s) 125, 154, 238, 360, 738
AsuC2I CCSGG 3 cut(s) 481, 717, 718
AsuHPI GGTGA 1 cut(s) 40
AvaI CYCGRG 2 cut(s) 191, 716
AvaII GGWCC 1 cut(s) 738
BaeGI GKGCMC 1 cut(s) 296
BanI GGYRCC 1 cut(s) 816
BanII GRGCYC 1 cut(s) 12
Bbv12I GWGCWC 2 cut(s) 12, 375
BbvI GCAGC 2 cut(s) 721, 752
BccI CCATC 1 cut(s) 83
BceAI ACGGC 3 cut(s) 139, 348, 362
BciT130I CCWGG 4 cut(s) 62, 358, 364, 733
BcnI CCSGG 3 cut(s) 481, 717, 718
BcoDI GTCTC 3 cut(s) 420, 456, 878
BfaI CTAG 2 cut(s) 798, 1065
BfuAI ACCTGC 1 cut(s) 828
BisI GCNGC 5 cut(s) 66, 266, 314, 710, 766
BlsI GCNGC 5 cut(s) 67, 267, 315, 711, 767
Bme1390I CCNGG 7 cut(s) 62, 358, 364, 481, 717, 718, 733
Bme18I GGWCC 1 cut(s) 738
BmeT110I CYCGRG 2 cut(s) 191, 716
BmgT120I GGNCC 5 cut(s) 125, 154, 238, 360, 738
BmiI GGNNCC 1 cut(s) 818
BmrFI CCNGG 7 cut(s) 62, 358, 364, 481, 717, 718, 733
BmsI GCATC 3 cut(s) 18, 108, 1009
BplI GAGNNNNNCTC 2 cut(s) 436, 468
BpmI CTGGAG 2 cut(s) 26, 124
Bpu10I CCTNAGC 1 cut(s) 905
BpuMI CCSGG 3 cut(s) 481, 717, 718
BsaHI GRCGYC 3 cut(s) 72, 105, 392
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 6 cut(s) 60, 362, 480, 716, 717, 861
BsaWI WCCGGW 1 cut(s) 810
BsaXI ACNNNNNCTCC 4 cut(s) 128, 158, 935, 965
Bsc4I CCNNNNNNNGG 8 cut(s) 198, 229, 290, 363, 513, 516, 732, 826
Bse118I RCCGGY 3 cut(s) 95, 761, 810
BseBI CCWGG 4 cut(s) 62, 358, 364, 733
BseDI CCNNGG 6 cut(s) 60, 362, 480, 716, 717, 861
BseGI GGATG 4 cut(s) 33, 400, 874, 904
BseLI CCNNNNNNNGG 8 cut(s) 198, 229, 290, 363, 513, 516, 732, 826
BseMII CTCAG 1 cut(s) 275
BseRI GAGGAG 2 cut(s) 460, 532
BseSI GKGCMC 1 cut(s) 296
BseXI GCAGC 2 cut(s) 721, 752
BseYI CCCAGC 2 cut(s) 268, 429
BsgI GTGCAG 1 cut(s) 455
Bsh1236I CGCG 1 cut(s) 354
Bsh1285I CGRYCG 1 cut(s) 345
BshFI GGCC 6 cut(s) 65, 126, 156, 239, 361, 682
BshNI GGYRCC 1 cut(s) 816
BshTI ACCGGT 1 cut(s) 810
BsiEI CGRYCG 1 cut(s) 345
BsiHKAI GWGCWC 2 cut(s) 12, 375
BsiHKCI CYCGRG 2 cut(s) 191, 716
BsiSI CCGG 5 cut(s) 96, 480, 717, 762, 811
BslFI GGGAC 2 cut(s) 68, 734
BslI CCNNNNNNNGG 8 cut(s) 198, 229, 290, 363, 513, 516, 732, 826
BsmAI GTCTC 3 cut(s) 420, 456, 878
BsmFI GGGAC 2 cut(s) 68, 734
BsmI GAATGC 1 cut(s) 768
BsnI GGCC 6 cut(s) 65, 126, 156, 239, 361, 682
Bso31I GGTCTC 1 cut(s) 456
BsoBI CYCGRG 2 cut(s) 191, 716
Bsp1286I GDGCHC 3 cut(s) 12, 296, 375
Bsp143I GATC 3 cut(s) 55, 661, 829
BspACI CCGC 9 cut(s) 51, 66, 246, 266, 281, 314, 404, 736, 795
BspANI GGCC 6 cut(s) 65, 126, 156, 239, 361, 682
BspCNI CTCAG 1 cut(s) 274
BspFNI CGCG 1 cut(s) 354
BspHI TCATGA 2 cut(s) 217, 675
BspLI GGNNCC 1 cut(s) 818
BspMI ACCTGC 1 cut(s) 828
BspPI GGATC 3 cut(s) 50, 656, 837
BspT107I GGYRCC 1 cut(s) 816
BspTNI GGTCTC 1 cut(s) 456
BsrFI RCCGGY 3 cut(s) 95, 761, 810
BssAI RCCGGY 3 cut(s) 95, 761, 810
BssECI CCNNGG 6 cut(s) 60, 362, 480, 716, 717, 861
BssMI GATC 3 cut(s) 55, 661, 829
BssNI GRCGYC 3 cut(s) 72, 105, 392
BssT1I CCWWGG 1 cut(s) 861
Bst2UI CCWGG 4 cut(s) 62, 358, 364, 733
Bst4CI ACNGT 2 cut(s) 23, 343
BstACI GRCGYC 3 cut(s) 72, 105, 392
BstAPI GCANNNNNTGC 1 cut(s) 379
BstC8I GCNNGC 5 cut(s) 97, 352, 375, 693, 763
BstDEI CTNAG 3 cut(s) 261, 905, 1083
BstENI CCTNNNNNAGG 1 cut(s) 824
BstF5I GGATG 4 cut(s) 33, 400, 874, 904
BstFNI CGCG 1 cut(s) 354
BstHHI GCGC 3 cut(s) 356, 459, 805
BstKTI GATC 3 cut(s) 58, 664, 832
BstMAI GTCTC 3 cut(s) 420, 456, 878
BstMBI GATC 3 cut(s) 55, 661, 829
BstMCI CGRYCG 1 cut(s) 345
BstMWI GCNNNNNNNGC 6 cut(s) 71, 245, 310, 379, 463, 688
BstNI CCWGG 4 cut(s) 62, 358, 364, 733
BstNSI RCATGY 1 cut(s) 589
BstSCI CCNGG 7 cut(s) 60, 356, 362, 479, 715, 716, 731
BstSLI GKGCMC 1 cut(s) 296
BstUI CGCG 1 cut(s) 354
BstV1I GCAGC 2 cut(s) 721, 752
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 6 cut(s) 65, 126, 156, 239, 361, 682
BtsCI GGATG 4 cut(s) 33, 400, 874, 904
BveI ACCTGC 1 cut(s) 828
Cac8I GCNNGC 5 cut(s) 97, 352, 375, 693, 763
CaiI CAGNNNCTG 1 cut(s) 268
CciI TCATGA 2 cut(s) 217, 675
CfoI GCGC 3 cut(s) 356, 459, 805
Cfr10I RCCGGY 3 cut(s) 95, 761, 810
Cfr13I GGNCC 5 cut(s) 125, 154, 238, 360, 738
Cfr9I CCCGGG 1 cut(s) 716
CseI GACGC 2 cut(s) 80, 113
Csp6I GTAC 2 cut(s) 121, 808
CspAI ACCGGT 1 cut(s) 810
CviAII CATG 8 cut(s) 42, 218, 229, 550, 586, 659, 676, 986
CviQI GTAC 2 cut(s) 121, 808
DdeI CTNAG 3 cut(s) 261, 905, 1083
DpnI GATC 3 cut(s) 57, 663, 831
DpnII GATC 3 cut(s) 55, 661, 829
DraIII CACNNNGTG 1 cut(s) 379
DrdI GACNNNNNNGTC 1 cut(s) 736
DseDI GACNNNNNNGTC 1 cut(s) 736
EciI GGCGGA 1 cut(s) 393
Ecl136II GAGCTC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 861
Eco24I GRGCYC 1 cut(s) 12
Eco31I GGTCTC 1 cut(s) 456
Eco47I GGWCC 1 cut(s) 738
Eco53kI GAGCTC 1 cut(s) 10
Eco88I CYCGRG 2 cut(s) 191, 716
EcoICRI GAGCTC 1 cut(s) 10
EcoNI CCTNNNNNAGG 1 cut(s) 824
EcoO109I RGGNCCY 1 cut(s) 154
EcoRII CCWGG 4 cut(s) 60, 356, 362, 731
EcoT14I CCWWGG 1 cut(s) 861
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 861
FaeI CATG 8 cut(s) 45, 221, 232, 553, 589, 662, 679, 989
FaqI GGGAC 2 cut(s) 68, 734
FatI CATG 8 cut(s) 41, 217, 228, 549, 585, 658, 675, 985
FauI CCCGC 2 cut(s) 253, 288
Fnu4HI GCNGC 5 cut(s) 66, 266, 314, 710, 766
FokI GGATG 4 cut(s) 40, 387, 881, 911
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 5 cut(s) 66, 266, 314, 710, 766
FspBI CTAG 2 cut(s) 798, 1065
GlaI GCGC 3 cut(s) 355, 458, 804
GluI GCNGC 5 cut(s) 66, 266, 314, 710, 766
GsaI CCCAGC 2 cut(s) 272, 433
GsuI CTGGAG 2 cut(s) 26, 124
HaeIII GGCC 6 cut(s) 65, 126, 156, 239, 361, 682
HapII CCGG 5 cut(s) 96, 480, 717, 762, 811
HgaI GACGC 2 cut(s) 80, 113
HhaI GCGC 3 cut(s) 356, 459, 805
Hin1I GRCGYC 3 cut(s) 72, 105, 392
Hin1II CATG 8 cut(s) 45, 221, 232, 553, 589, 662, 679, 989
Hin6I GCGC 3 cut(s) 354, 457, 803
HinP1I GCGC 3 cut(s) 354, 457, 803
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 4 cut(s) 185, 194, 202, 788
HpaI GTTAAC 1 cut(s) 574
HpaII CCGG 5 cut(s) 96, 480, 717, 762, 811
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 2 cut(s) 574, 741
Hpy188I TCNGA 3 cut(s) 27, 148, 207
Hpy188III TCNNGA 5 cut(s) 175, 218, 676, 931, 1065
Hpy8I GTNNAC 2 cut(s) 574, 741
Hpy99I CGWCG 5 cut(s) 27, 74, 107, 394, 397
HpyAV CCTTC 2 cut(s) 754, 1034
HpyCH4III ACNGT 2 cut(s) 23, 343
HpyCH4IV ACGT 4 cut(s) 81, 392, 499, 627
HpyCH4V TGCA 6 cut(s) 436, 691, 709, 768, 1034, 1051
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 245, 310, 379, 463, 688
HpyF3I CTNAG 3 cut(s) 261, 905, 1083
HpySE526I ACGT 4 cut(s) 81, 392, 499, 627
Hsp92I GRCGYC 3 cut(s) 72, 105, 392
Hsp92II CATG 8 cut(s) 45, 221, 232, 553, 589, 662, 679, 989
HspAI GCGC 3 cut(s) 354, 457, 803
KroI GCCGGC 2 cut(s) 95, 761
KroNI GCCGGC 2 cut(s) 97, 763
KspAI GTTAAC 1 cut(s) 574
Kzo9I GATC 3 cut(s) 55, 661, 829
LmnI GCTCC 5 cut(s) 7, 149, 370, 519, 909
Lsp1109I GCAGC 2 cut(s) 721, 752
LweI GCATC 3 cut(s) 18, 108, 1009
MaeI CTAG 2 cut(s) 798, 1065
MaeII ACGT 4 cut(s) 81, 392, 499, 627
MaeIII GTNAC 2 cut(s) 328, 623
MalI GATC 3 cut(s) 57, 663, 831
MboI GATC 3 cut(s) 55, 661, 829
MboII GAAGA 1 cut(s) 1066
MfeI CAATTG 1 cut(s) 1035
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 3 cut(s) 12, 296, 375
MluCI AATT 4 cut(s) 308, 409, 969, 1035
MlyI GAGTC 2 cut(s) 179, 203
MmeI TCCRAC 4 cut(s) 5, 402, 475, 933
MroNI GCCGGC 2 cut(s) 95, 761
MseI TTAA 2 cut(s) 573, 1059
MslI CAYNNNNRTG 2 cut(s) 467, 773
MspA1I CMGCKG 1 cut(s) 268
MspI CCGG 5 cut(s) 96, 480, 717, 762, 811
MspR9I CCNGG 7 cut(s) 62, 358, 364, 481, 717, 718, 733
MunI CAATTG 1 cut(s) 1035
Mva1269I GAATGC 1 cut(s) 768
MvaI CCWGG 4 cut(s) 62, 358, 364, 733
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 6 cut(s) 71, 245, 310, 379, 463, 688
NaeI GCCGGC 2 cut(s) 97, 763
NciI CCSGG 3 cut(s) 481, 717, 718
NdeII GATC 3 cut(s) 55, 661, 829
NgoMIV GCCGGC 2 cut(s) 95, 761
NlaIII CATG 8 cut(s) 45, 221, 232, 553, 589, 662, 679, 989
NlaIV GGNNCC 1 cut(s) 818
NmeAIII GCCGAG 1 cut(s) 433
NmuCI GTSAC 2 cut(s) 328, 623
NspI RCATGY 1 cut(s) 589
PagI TCATGA 2 cut(s) 217, 675
PaqCI CACCTGC 1 cut(s) 828
PcsI WCGNNNNNNNCGW 3 cut(s) 78, 99, 194
PctI GAATGC 1 cut(s) 768
PdiI GCCGGC 2 cut(s) 97, 763
PfeI GAWTC 2 cut(s) 202, 788
PflMI CCANNNNNTGG 1 cut(s) 229
PinAI ACCGGT 1 cut(s) 810
PkrI GCNGC 5 cut(s) 67, 267, 315, 711, 767
PleI GAGTC 2 cut(s) 179, 202
PpsI GAGTC 2 cut(s) 179, 202
Psp124BI GAGCTC 1 cut(s) 12
Psp6I CCWGG 4 cut(s) 60, 356, 362, 731
PspFI CCCAGC 2 cut(s) 268, 429
PspGI CCWGG 4 cut(s) 60, 356, 362, 731
PspN4I GGNNCC 1 cut(s) 818
PspPI GGNCC 5 cut(s) 125, 154, 238, 360, 738
PstNI CAGNNNCTG 1 cut(s) 268
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 2 cut(s) 122, 809
RsaNI GTAC 2 cut(s) 121, 808
RseI CAYNNNNRTG 2 cut(s) 467, 773
SacI GAGCTC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 573, 1059
SatI GCNGC 5 cut(s) 66, 266, 314, 710, 766
Sau3AI GATC 3 cut(s) 55, 661, 829
Sau96I GGNCC 5 cut(s) 125, 154, 238, 360, 738
SchI GAGTC 2 cut(s) 179, 203
ScrFI CCNGG 7 cut(s) 62, 358, 364, 481, 717, 718, 733
SduI GDGCHC 3 cut(s) 12, 296, 375
SfaNI GCATC 3 cut(s) 18, 108, 1009
SinI GGWCC 1 cut(s) 738
SmaI CCCGGG 1 cut(s) 718
SmiMI CAYNNNNRTG 2 cut(s) 467, 773
Sse9I AATT 4 cut(s) 308, 409, 969, 1035
SsiI CCGC 9 cut(s) 51, 66, 246, 266, 281, 314, 404, 736, 795
SspMI CTAG 2 cut(s) 798, 1065
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 7 cut(s) 60, 356, 362, 479, 715, 716, 731
StyI CCWWGG 1 cut(s) 861
TaaI ACNGT 2 cut(s) 23, 343
TaiI ACGT 4 cut(s) 84, 395, 502, 630
TaqI TCGA 6 cut(s) 33, 102, 168, 306, 345, 747
TasI AATT 4 cut(s) 308, 409, 969, 1035
TauI GCSGC 3 cut(s) 68, 268, 316
TfiI GAWTC 2 cut(s) 202, 788
Tru1I TTAA 2 cut(s) 573, 1059
Tru9I TTAA 2 cut(s) 573, 1059
TseFI GTSAC 2 cut(s) 328, 623
TseI GCWGC 2 cut(s) 709, 765
Tsp45I GTSAC 2 cut(s) 328, 623
TspDTI ATGAA 4 cut(s) 217, 389, 566, 664
TspMI CCCGGG 1 cut(s) 716
Van91I CCANNNNNTGG 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 738
XagI CCTNNNNNAGG 1 cut(s) 824
XbaI TCTAGA 1 cut(s) 1064
XceI RCATGY 1 cut(s) 589
XcmI CCANNNNNNNNNTGG 1 cut(s) 868
XmaI CCCGGG 1 cut(s) 716
XspI CTAG 2 cut(s) 798, 1065
ZraI GACGTC 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.