Rmu_co8347103.1_g000001

xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8347103.1
OG0014036
Physical Location & Seq
Forward (+)
1 .. 1028
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8347103.1_g000001.1.cds

Sequence Viewer

Length: 1028 bp
gactcaaacccaacggactgcgccgaccgttggatccacatccggcgcctcccgtccactttcaacctcgacctcctctccaactgctccggctaccccttgttcggcgacctctgccccttcttgcccaaccatggcctcggccacaagacccacaaccgctcccagagctggtaccgaacagactccctaatgatggagctcatcttccaccgccggatgctcgaatacccatgtctgacgtcagatccccgccaggctgacgccgtctacctcccctactacgccggcatcgacgccatgaggtacctctacggccccgaagtcaactccagcgccgatcagggccttcagctctacgagtttttgcaggaggatttgccggaggtgtggagtcggaactcgggtcacgaccatttcatggtcctggcccgacccgcctgggatttctctcagccgttggattctgatccgccgacgtgggggacctcgcttctggagctcccccattttttcaacgtcacggctttgacggtggaggcgcgtgcctggccttggcaggagcacgccgtgccttatccgacgtcgtttcacccgcccagtctttctttactcgagagctggatgcagagggcaagaaggtccaagcgcacttcactaatgatgtttgccggcggcggaggctcgccgacgagtagccccaacattcgccggagcattaggagcgagtgtgagaatagcacgagcaatgtgaccaacaatgtgcatggaaatggcttctatggcggagccggcgggtactcgaagctgtgtgacattgtggattgctctaatgggatttgtgaacataaccctattaggttcatgaagccaatgctgcaagcaagtttttgcttgcagcccccgggggacaccccgacgaggcggtcaatgtttgacagcattctcgccgggtgtatccccgttttctttgaggaattgtctgcgagagcgcagtatggctggcacttgccggaggatcagtaccc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

343

Amino Acids

38.91

Weight (kDa)

5.78

Isoelectric Point (pI)

60.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22580
fragaria_vesca FvH4_5g00260
malus_domestica MD04G1084800.v1.1 MD09G1022700.v1.1
prunus_persica Prupe.5G075200_v2.0.a1
pyrus_communis pycom04g07570 pycom111g01900
rosa_chinensis RchiOBHm_Chr7g0202381
rosa_laevigata RLG00000003605
rosa_multiflora Rmu_co8347103.1_g000001 Rmu_sc0000266.1_g000011
rosa_rugosa Rorug07G0070400
rosa_samantha Rh7AG197700 Rh7BG198700 Rh7CG208900 Rh7DG204600
rosa_wichuraiana Rw7G017330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 925
AatII GACGTC 2 cut(s) 245, 587
Acc65I GGTACC 2 cut(s) 174, 306
AccB1I GGYRCC 3 cut(s) 45, 174, 306
AccB7I CCANNNNNTGG 1 cut(s) 421
AccBSI CCGCTC 1 cut(s) 162
AccI GTMKAC 1 cut(s) 270
AccII CGCG 1 cut(s) 544
AclWI GGATC 5 cut(s) 28, 41, 242, 464, 1026
AcoI YGGCCR 1 cut(s) 142
AcuI CTGAAG 1 cut(s) 335
AcyI GRCGYC 5 cut(s) 46, 242, 264, 297, 584
AdeI CACNNNGTG 1 cut(s) 571
AfaI GTAC 4 cut(s) 176, 308, 800, 1025
AfiI CCNNNNNNNGG 9 cut(s) 30, 104, 134, 171, 196, 421, 482, 555, 921
AgsI TTSAA 2 cut(s) 64, 517
AjiI CACGTC 1 cut(s) 480
AjnI CCWGG 4 cut(s) 255, 426, 440, 548
AluBI AGCT 6 cut(s) 171, 202, 355, 502, 621, 808
AluI AGCT 6 cut(s) 171, 202, 355, 502, 621, 808
Alw21I GWGCWC 3 cut(s) 204, 504, 567
AlwI GGATC 5 cut(s) 28, 41, 242, 464, 1026
Ama87I CYCGRG 3 cut(s) 403, 614, 904
AoxI GGCC 6 cut(s) 136, 142, 316, 346, 429, 551
ApeKI GCWGC 2 cut(s) 877, 898
Asp718I GGTACC 2 cut(s) 174, 306
AspLEI GCGC 6 cut(s) 23, 48, 338, 544, 651, 994
AspS9I GGNCC 6 cut(s) 317, 346, 424, 430, 486, 642
AsuC2I CCSGG 3 cut(s) 905, 906, 952
AsuHPI GGTGA 1 cut(s) 584
AvaI CYCGRG 3 cut(s) 403, 614, 904
AvaII GGWCC 3 cut(s) 424, 486, 642
BamHI GGATCC 1 cut(s) 33
BanI GGYRCC 3 cut(s) 45, 174, 306
BanII GRGCYC 2 cut(s) 204, 504
BauI CACGAG 1 cut(s) 742
Bbv12I GWGCWC 3 cut(s) 204, 504, 567
BbvI GCAGC 2 cut(s) 864, 910
BccI CCATC 1 cut(s) 190
BceAI ACGGC 5 cut(s) 251, 331, 442, 540, 554
BciT130I CCWGG 4 cut(s) 257, 428, 442, 550
BciVI GTATCC 1 cut(s) 968
BcnI CCSGG 3 cut(s) 905, 906, 952
BfoI RGCGCY 2 cut(s) 49, 339
BfuI GTATCC 1 cut(s) 968
BisI GCNGC 3 cut(s) 676, 878, 899
BlsI GCNGC 3 cut(s) 677, 879, 900
Bme1390I CCNGG 7 cut(s) 257, 428, 442, 550, 905, 906, 952
Bme18I GGWCC 3 cut(s) 424, 486, 642
BmeT110I CYCGRG 3 cut(s) 403, 614, 904
BmgBI CACGTC 1 cut(s) 480
BmgT120I GGNCC 6 cut(s) 317, 346, 424, 430, 486, 642
BmiI GGNNCC 7 cut(s) 35, 47, 176, 308, 319, 487, 790
BmrFI CCNGG 7 cut(s) 257, 428, 442, 550, 905, 906, 952
BmrI ACTGGG 1 cut(s) 594
BmsI GCATC 3 cut(s) 210, 300, 615
BmuI ACTGGG 1 cut(s) 594
BpmI CTGGAG 2 cut(s) 316, 518
BpuMI CCSGG 3 cut(s) 905, 906, 952
BsaBI GATNNNNATC 2 cut(s) 38, 468
BsaHI GRCGYC 5 cut(s) 46, 242, 264, 297, 584
BsaJI CCNNGG 7 cut(s) 133, 139, 441, 554, 903, 904, 905
BsaXI ACNNNNNCTCC 7 cut(s) 62, 92, 146, 176, 715, 745, 1007
Bsc4I CCNNNNNNNGG 9 cut(s) 30, 104, 134, 171, 196, 421, 482, 555, 921
Bse118I RCCGGY 3 cut(s) 287, 671, 791
Bse1I ACTGG 1 cut(s) 600
Bse3DI GCAATG 1 cut(s) 754
Bse8I GATNNNNATC 2 cut(s) 38, 468
BseBI CCWGG 4 cut(s) 257, 428, 442, 550
BseDI CCNNGG 7 cut(s) 133, 139, 441, 554, 903, 904, 905
BseGI GGATG 3 cut(s) 39, 225, 630
BseJI GATNNNNATC 2 cut(s) 38, 468
BseLI CCNNNNNNNGG 9 cut(s) 30, 104, 134, 171, 196, 421, 482, 555, 921
BseMI GCAATG 1 cut(s) 754
BseMII CTCAG 1 cut(s) 467
BseNI ACTGG 1 cut(s) 600
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 2 cut(s) 864, 910
Bsh1236I CGCG 1 cut(s) 544
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 6 cut(s) 138, 144, 318, 348, 431, 553
BshNI GGYRCC 3 cut(s) 45, 174, 306
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 3 cut(s) 204, 504, 567
BsiHKCI CYCGRG 3 cut(s) 403, 614, 904
BslFI GGGAC 2 cut(s) 499, 923
BslI CCNNNNNNNGG 9 cut(s) 30, 104, 134, 171, 196, 421, 482, 555, 921
BsmFI GGGAC 2 cut(s) 499, 923
BsmI GAATGC 1 cut(s) 942
BsnI GGCC 6 cut(s) 138, 144, 318, 348, 431, 553
BsoBI CYCGRG 3 cut(s) 403, 614, 904
Bsp1286I GDGCHC 3 cut(s) 204, 504, 567
Bsp143I GATC 5 cut(s) 33, 247, 340, 469, 1018
Bsp19I CCATGG 1 cut(s) 133
BspANI GGCC 6 cut(s) 138, 144, 318, 348, 431, 553
BspCNI CTCAG 1 cut(s) 466
BspFNI CGCG 1 cut(s) 544
BspHI TCATGA 1 cut(s) 864
BspLI GGNNCC 7 cut(s) 35, 47, 176, 308, 319, 487, 790
BspPI GGATC 5 cut(s) 28, 41, 242, 464, 1026
BspT107I GGYRCC 3 cut(s) 45, 174, 306
BsrBI CCGCTC 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 754
BsrFI RCCGGY 3 cut(s) 287, 671, 791
BsrI ACTGG 1 cut(s) 600
BssAI RCCGGY 3 cut(s) 287, 671, 791
BssECI CCNNGG 7 cut(s) 133, 139, 441, 554, 903, 904, 905
BssMI GATC 5 cut(s) 33, 247, 340, 469, 1018
BssNI GRCGYC 5 cut(s) 46, 242, 264, 297, 584
BssSI CACGAG 1 cut(s) 742
BssT1I CCWWGG 2 cut(s) 133, 554
Bst2BI CACGAG 1 cut(s) 742
Bst2UI CCWGG 4 cut(s) 257, 428, 442, 550
Bst4CI ACNGT 2 cut(s) 29, 535
BstACI GRCGYC 5 cut(s) 46, 242, 264, 297, 584
BstAPI GCANNNNNTGC 1 cut(s) 571
BstC8I GCNNGC 9 cut(s) 289, 546, 567, 673, 686, 793, 882, 896, 1004
BstDEI CTNAG 1 cut(s) 453
BstDSI CCRYGG 1 cut(s) 133
BstF5I GGATG 3 cut(s) 39, 225, 630
BstFNI CGCG 1 cut(s) 544
BstH2I RGCGCY 2 cut(s) 49, 339
BstHHI GCGC 6 cut(s) 23, 48, 338, 544, 651, 994
BstKTI GATC 5 cut(s) 36, 250, 343, 472, 1021
BstMBI GATC 5 cut(s) 33, 247, 340, 469, 1018
BstMCI CGRYCG 1 cut(s) 28
BstNI CCWGG 4 cut(s) 257, 428, 442, 550
BstSCI CCNGG 7 cut(s) 255, 426, 440, 548, 903, 904, 950
BstUI CGCG 1 cut(s) 544
BstV1I GCAGC 2 cut(s) 864, 910
BstX2I RGATCY 2 cut(s) 33, 247
BstYI RGATCY 2 cut(s) 33, 247
BsuI GTATCC 1 cut(s) 968
BsuRI GGCC 6 cut(s) 138, 144, 318, 348, 431, 553
BtgI CCRYGG 1 cut(s) 133
BtrI CACGTC 1 cut(s) 480
BtsCI GGATG 3 cut(s) 39, 225, 630
Cac8I GCNNGC 9 cut(s) 289, 546, 567, 673, 686, 793, 882, 896, 1004
CciI TCATGA 1 cut(s) 864
CfoI GCGC 6 cut(s) 23, 48, 338, 544, 651, 994
Cfr10I RCCGGY 3 cut(s) 287, 671, 791
Cfr13I GGNCC 6 cut(s) 317, 346, 424, 430, 486, 642
Cfr9I CCCGGG 1 cut(s) 904
CseI GACGC 2 cut(s) 272, 305
Csp6I GTAC 4 cut(s) 175, 307, 799, 1024
CviAII CATG 6 cut(s) 134, 234, 301, 421, 767, 865
CviQI GTAC 4 cut(s) 175, 307, 799, 1024
DdeI CTNAG 1 cut(s) 453
DinI GGCGCC 1 cut(s) 47
DpnI GATC 5 cut(s) 35, 249, 342, 471, 1020
DpnII GATC 5 cut(s) 33, 247, 340, 469, 1018
DraIII CACNNNGTG 1 cut(s) 571
DrdI GACNNNNNNGTC 1 cut(s) 925
DseDI GACNNNNNNGTC 1 cut(s) 925
EaeI YGGCCR 1 cut(s) 142
EciI GGCGGA 3 cut(s) 462, 693, 801
Ecl136II GAGCTC 2 cut(s) 202, 502
Eco130I CCWWGG 2 cut(s) 133, 554
Eco24I GRGCYC 2 cut(s) 204, 504
Eco47I GGWCC 3 cut(s) 424, 486, 642
Eco53kI GAGCTC 2 cut(s) 202, 502
Eco57I CTGAAG 1 cut(s) 335
Eco88I CYCGRG 3 cut(s) 403, 614, 904
EcoICRI GAGCTC 2 cut(s) 202, 502
EcoO109I RGGNCCY 2 cut(s) 346, 486
EcoRII CCWGG 4 cut(s) 255, 426, 440, 548
EcoT14I CCWWGG 2 cut(s) 133, 554
EcoT38I GRGCYC 2 cut(s) 204, 504
EgeI GGCGCC 1 cut(s) 47
EheI GGCGCC 1 cut(s) 47
ErhI CCWWGG 2 cut(s) 133, 554
FaeI CATG 6 cut(s) 137, 237, 304, 424, 770, 868
FaiI YATR 9 cut(s) 135, 235, 302, 422, 768, 783, 849, 866, 999
FaqI GGGAC 2 cut(s) 499, 923
FatI CATG 6 cut(s) 133, 233, 300, 420, 766, 864
FauI CCCGC 4 cut(s) 260, 445, 603, 788
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 3 cut(s) 676, 878, 899
FokI GGATG 3 cut(s) 26, 232, 637
FriOI GRGCYC 2 cut(s) 204, 504
Fsp4HI GCNGC 3 cut(s) 676, 878, 899
GlaI GCGC 6 cut(s) 22, 47, 337, 543, 650, 993
GluI GCNGC 3 cut(s) 676, 878, 899
GsuI CTGGAG 2 cut(s) 316, 518
HaeII RGCGCY 2 cut(s) 49, 339
HaeIII GGCC 6 cut(s) 138, 144, 318, 348, 431, 553
HgaI GACGC 2 cut(s) 272, 305
HhaI GCGC 6 cut(s) 23, 48, 338, 544, 651, 994
Hin1I GRCGYC 5 cut(s) 46, 242, 264, 297, 584
Hin1II CATG 6 cut(s) 137, 237, 304, 424, 770, 868
Hin6I GCGC 6 cut(s) 21, 46, 336, 542, 649, 992
HinP1I GCGC 6 cut(s) 21, 46, 336, 542, 649, 992
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 4 cut(s) 2, 185, 394, 464
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 4 cut(s) 57, 271, 328, 845
Hpy188I TCNGA 5 cut(s) 240, 247, 399, 469, 582
Hpy188III TCNNGA 4 cut(s) 410, 497, 616, 865
Hpy8I GTNNAC 4 cut(s) 57, 271, 328, 845
Hpy99I CGWCG 6 cut(s) 299, 481, 586, 589, 694, 922
HpyAV CCTTC 3 cut(s) 130, 359, 633
HpyCH4III ACNGT 2 cut(s) 29, 535
HpyCH4IV ACGT 4 cut(s) 242, 479, 519, 584
HpyCH4V TGCA 5 cut(s) 370, 628, 766, 880, 898
HpyF3I CTNAG 1 cut(s) 453
HpySE526I ACGT 4 cut(s) 242, 479, 519, 584
Hsp92I GRCGYC 5 cut(s) 46, 242, 264, 297, 584
Hsp92II CATG 6 cut(s) 137, 237, 304, 424, 770, 868
HspAI GCGC 6 cut(s) 21, 46, 336, 542, 649, 992
KasI GGCGCC 1 cut(s) 45
KpnI GGTACC 2 cut(s) 178, 310
KroI GCCGGC 3 cut(s) 287, 671, 791
KroNI GCCGGC 3 cut(s) 289, 673, 793
Kzo9I GATC 5 cut(s) 33, 247, 340, 469, 1018
LmnI GCTCC 9 cut(s) 92, 167, 199, 499, 507, 562, 714, 723, 788
Lsp1109I GCAGC 2 cut(s) 864, 910
LweI GCATC 3 cut(s) 210, 300, 615
MaeII ACGT 4 cut(s) 242, 479, 519, 584
MaeIII GTNAC 4 cut(s) 407, 520, 751, 812
MalI GATC 5 cut(s) 35, 249, 342, 471, 1020
MbiI CCGCTC 1 cut(s) 162
MboI GATC 5 cut(s) 33, 247, 340, 469, 1018
MboII GAAGA 1 cut(s) 199
MflI RGATCY 2 cut(s) 33, 247
MhlI GDGCHC 3 cut(s) 204, 504, 567
MluCI AATT 1 cut(s) 977
Mly113I GGCGCC 1 cut(s) 46
MlyI GAGTC 2 cut(s) 179, 403
MmeI TCCRAC 5 cut(s) 11, 105, 377, 441, 605
MroNI GCCGGC 3 cut(s) 287, 671, 791
MslI CAYNNNNRTG 1 cut(s) 771
MspR9I CCNGG 7 cut(s) 257, 428, 442, 550, 905, 906, 952
Mva1269I GAATGC 1 cut(s) 942
MvaI CCWGG 4 cut(s) 257, 428, 442, 550
MvnI CGCG 1 cut(s) 544
NaeI GCCGGC 3 cut(s) 289, 673, 793
NarI GGCGCC 1 cut(s) 46
NciI CCSGG 3 cut(s) 905, 906, 952
NcoI CCATGG 1 cut(s) 133
NdeII GATC 5 cut(s) 33, 247, 340, 469, 1018
NgoMIV GCCGGC 3 cut(s) 287, 671, 791
NlaIII CATG 6 cut(s) 137, 237, 304, 424, 770, 868
NlaIV GGNNCC 7 cut(s) 35, 47, 176, 308, 319, 487, 790
NmeAIII GCCGAG 1 cut(s) 120
NmuCI GTSAC 4 cut(s) 407, 520, 751, 812
PaeR7I CTCGAG 1 cut(s) 614
PagI TCATGA 1 cut(s) 864
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PctI GAATGC 1 cut(s) 942
PdiI GCCGGC 3 cut(s) 289, 673, 793
PfeI GAWTC 1 cut(s) 464
PflFI GACNNNGTC 1 cut(s) 266
PflMI CCANNNNNTGG 1 cut(s) 421
PkrI GCNGC 3 cut(s) 677, 879, 900
PleI GAGTC 2 cut(s) 179, 402
PluTI GGCGCC 1 cut(s) 49
PpsI GAGTC 2 cut(s) 179, 402
PpuMI RGGWCCY 1 cut(s) 486
Psp124BI GAGCTC 2 cut(s) 204, 504
Psp5II RGGWCCY 1 cut(s) 486
Psp6I CCWGG 4 cut(s) 255, 426, 440, 548
PspGI CCWGG 4 cut(s) 255, 426, 440, 548
PspN4I GGNNCC 7 cut(s) 35, 47, 176, 308, 319, 487, 790
PspPI GGNCC 6 cut(s) 317, 346, 424, 430, 486, 642
PspPPI RGGWCCY 1 cut(s) 486
PsuI RGATCY 2 cut(s) 33, 247
PsyI GACNNNGTC 1 cut(s) 266
RsaI GTAC 4 cut(s) 176, 308, 800, 1025
RsaNI GTAC 4 cut(s) 175, 307, 799, 1024
RseI CAYNNNNRTG 1 cut(s) 771
SacI GAGCTC 2 cut(s) 204, 504
SatI GCNGC 3 cut(s) 676, 878, 899
Sau3AI GATC 5 cut(s) 33, 247, 340, 469, 1018
Sau96I GGNCC 6 cut(s) 317, 346, 424, 430, 486, 642
SchI GAGTC 2 cut(s) 179, 403
ScrFI CCNGG 7 cut(s) 257, 428, 442, 550, 905, 906, 952
SduI GDGCHC 3 cut(s) 204, 504, 567
SfaNI GCATC 3 cut(s) 210, 300, 615
SfoI GGCGCC 1 cut(s) 47
Sfr274I CTCGAG 1 cut(s) 614
SinI GGWCC 3 cut(s) 424, 486, 642
SlaI CTCGAG 1 cut(s) 614
SmaI CCCGGG 1 cut(s) 906
SmiMI CAYNNNNRTG 1 cut(s) 771
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
Sse9I AATT 1 cut(s) 977
SspDI GGCGCC 1 cut(s) 45
SstI GAGCTC 2 cut(s) 204, 504
StyD4I CCNGG 7 cut(s) 255, 426, 440, 548, 903, 904, 950
StyI CCWWGG 2 cut(s) 133, 554
TaaI ACNGT 2 cut(s) 29, 535
TaiI ACGT 4 cut(s) 245, 482, 522, 587
TaqI TCGA 5 cut(s) 69, 225, 294, 615, 803
TasI AATT 1 cut(s) 977
TauI GCSGC 1 cut(s) 678
TfiI GAWTC 1 cut(s) 464
TseFI GTSAC 4 cut(s) 407, 520, 751, 812
TseI GCWGC 2 cut(s) 877, 898
Tsp45I GTSAC 4 cut(s) 407, 520, 751, 812
TspDTI ATGAA 3 cut(s) 409, 853, 881
TspGWI ACGGA 1 cut(s) 29
TspMI CCCGGG 1 cut(s) 904
Tth111I GACNNNGTC 1 cut(s) 266
Van91I CCANNNNNTGG 1 cut(s) 421
VpaK11BI GGWCC 3 cut(s) 424, 486, 642
XhoI CTCGAG 1 cut(s) 614
XmaI CCCGGG 1 cut(s) 904
XmiI GTMKAC 1 cut(s) 270
ZraI GACGTC 2 cut(s) 243, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.