AT4G25225

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0017499
Physical Location & Seq
Reverse (-)
12922887 .. 12923431
545 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G25225.1

Sequence Viewer

Length: 171 bp
ATGGGGATAATAAGGAGCAGCTTCTCTTTCATCATGGGAACAGTGTGCGGGATCTACATCGCTCAGACCTACAACGTCCCTAACATCAAAAAGCTCGGTCACTGCGCCGTTTCAATGGCCAAGCAAGTTGAGGAGAAATATCGCAAGCCCAAAAGCAGAGACGACGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4535

Protein Analysis

56

Amino Acids

6.31

Weight (kDa)

9.57

Isoelectric Point (pI)

34.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4535 PF15054 6 - 50 4.8e-24 Domain of unknown function (DUF4535)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25225 AT4G25225
malus_domestica MD07G1254000.v1.1
prunus_persica Prupe.2G277300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0374431
rosa_roxburghii Rroxscaffold_4G00283500
rosa_rugosa Rorug01G0382800
rosa_samantha Rh1AG393800 Rh1BG358300 Rh1DG389000
rosa_wichuraiana Rw1G034150 Rw1G034230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 48
AclWI GGATC 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 117
AgsI TTSAA 1 cut(s) 114
AluBI AGCT 2 cut(s) 21, 94
AluI AGCT 2 cut(s) 21, 94
Alw26I GTCTC 1 cut(s) 153
AlwI GGATC 1 cut(s) 59
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 107
BalI TGGCCA 1 cut(s) 119
BbvI GCAGC 1 cut(s) 30
BceAI ACGGC 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 153
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
BsaBI GATNNNNATC 1 cut(s) 56
Bse8I GATNNNNATC 1 cut(s) 56
BseJI GATNNNNATC 1 cut(s) 56
BseMII CTCAG 1 cut(s) 77
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 1 cut(s) 30
BshFI GGCC 1 cut(s) 119
BslFI GGGAC 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 153
BsmBI CGTCTC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 51
BspACI CCGC 1 cut(s) 48
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 1 cut(s) 76
BspPI GGATC 1 cut(s) 59
BssMI GATC 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 43
BstC8I GCNNGC 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 63
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 1 cut(s) 54
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BsuRI GGCC 1 cut(s) 119
BtgZI GCGATG 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 2 cut(s) 48, 100
Cac8I GCNNGC 1 cut(s) 146
CfoI GCGC 1 cut(s) 107
CviAII CATG 1 cut(s) 34
CviJI RGCY 4 cut(s) 21, 94, 119, 148
CviKI_1 RGCY 4 cut(s) 21, 94, 119, 148
DdeI CTNAG 1 cut(s) 63
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 117
Esp3I CGTCTC 1 cut(s) 153
FaeI CATG 1 cut(s) 37
FaiI YATR 1 cut(s) 35
FaqI GGGAC 1 cut(s) 62
FatI CATG 1 cut(s) 33
FauI CCCGC 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 19
GlaI GCGC 1 cut(s) 106
GluI GCNGC 1 cut(s) 19
HaeIII GGCC 1 cut(s) 119
HhaI GCGC 1 cut(s) 107
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
Hpy188I TCNGA 1 cut(s) 66
Hpy99I CGWCG 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 2 cut(s) 75, 165
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 2 cut(s) 75, 165
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 1 cut(s) 105
Kzo9I GATC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 15
Lsp1109I GCAGC 1 cut(s) 30
MaeII ACGT 2 cut(s) 75, 165
MaeIII GTNAC 1 cut(s) 98
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MflI RGATCY 1 cut(s) 51
MlsI TGGCCA 1 cut(s) 119
MluNI TGGCCA 1 cut(s) 119
MnlI CCTC 1 cut(s) 124
Mox20I TGGCCA 1 cut(s) 119
MscI TGGCCA 1 cut(s) 119
Msp20I TGGCCA 1 cut(s) 119
NdeII GATC 1 cut(s) 51
NlaIII CATG 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 98
PkrI GCNGC 1 cut(s) 20
PsuI RGATCY 1 cut(s) 51
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 1 cut(s) 51
SetI ASST 5 cut(s) 23, 71, 78, 96, 168
SgeI CNNG 6 cut(s) 46, 61, 107, 133, 137, 157
SsiI CCGC 1 cut(s) 48
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 2 cut(s) 78, 168
TaqII GACCGA 1 cut(s) 86
TscAI CASTG 2 cut(s) 48, 107
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 1 cut(s) 18
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 19
TspRI CASTG 2 cut(s) 48, 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.