Rh1DG389000

Domain of unknown function (DUF4535)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0017499
Physical Location & Seq
Reverse (-)
60802522 .. 60803908
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG389000.1

Sequence Viewer

Length: 171 bp
ATGGGGATCATAAAGAGCTCCTTCTCCTTCATAATGGGCACGGTCACCGGAGTCTACATAGCCCAAAACTACGCCGTTCCGAACATCAAGAAGCTCGCCGACACCGCCCTCTTCATGGCCAAGCAAATTGAGGAGAAGTACCGCAAGCCCAAGAAGAGAGACGACGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4535

Protein Analysis

56

Amino Acids

6.37

Weight (kDa)

9.57

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4535 PF15054 6 - 50 1.5e-25 Domain of unknown function (DUF4535)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25225 AT4G25225
malus_domestica MD07G1254000.v1.1
prunus_persica Prupe.2G277300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0374431
rosa_roxburghii Rroxscaffold_4G00283500
rosa_rugosa Rorug01G0382800
rosa_samantha Rh1AG393800 Rh1BG358300 Rh1DG389000
rosa_wichuraiana Rw1G034150 Rw1G034230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 54
AciI CCGC 2 cut(s) 105, 142
AclWI GGATC 1 cut(s) 14
AcoI YGGCCR 1 cut(s) 117
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 115
AluBI AGCT 2 cut(s) 18, 94
AluI AGCT 2 cut(s) 18, 94
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 153
AlwI GGATC 1 cut(s) 14
AoxI GGCC 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 37
BaeGI GKGCMC 1 cut(s) 41
BalI TGGCCA 1 cut(s) 119
BanII GRGCYC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 20
BceAI ACGGC 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 1 cut(s) 169
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 115
BseLI CCNNNNNNNGG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 41
BshFI GGCC 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 153
BsmBI CGTCTC 1 cut(s) 153
BsnI GGCC 1 cut(s) 119
Bsp1286I GDGCHC 2 cut(s) 20, 41
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 2 cut(s) 105, 142
BspANI GGCC 1 cut(s) 119
BspPI GGATC 1 cut(s) 14
BssMI GATC 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 2 cut(s) 116, 149
BstC8I GCNNGC 2 cut(s) 96, 146
BstEII GGTNACC 1 cut(s) 43
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstPI GGTNACC 1 cut(s) 43
BstSLI GKGCMC 1 cut(s) 41
BsuRI GGCC 1 cut(s) 119
Cac8I GCNNGC 2 cut(s) 96, 146
Csp6I GTAC 1 cut(s) 139
CviAII CATG 1 cut(s) 115
CviJI RGCY 5 cut(s) 18, 62, 94, 119, 148
CviKI_1 RGCY 5 cut(s) 18, 62, 94, 119, 148
CviQI GTAC 1 cut(s) 139
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 2 cut(s) 116, 149
EarI CTCTTC 2 cut(s) 116, 149
Ecl136II GAGCTC 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 18
Eco91I GGTNACC 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 18
EcoO65I GGTNACC 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 20
Esp3I CGTCTC 1 cut(s) 153
FaeI CATG 1 cut(s) 118
FaiI YATR 4 cut(s) 11, 32, 59, 116
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 1 cut(s) 114
FblI GTMKAC 1 cut(s) 54
FriOI GRGCYC 1 cut(s) 20
FspBI CTAG 1 cut(s) 169
HaeIII GGCC 1 cut(s) 119
HapII CCGG 1 cut(s) 48
Hin1II CATG 1 cut(s) 118
HinfI GANTC 1 cut(s) 51
HpaII CCGG 1 cut(s) 48
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 31, 37
HpyCH4III ACNGT 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
Hsp92II CATG 1 cut(s) 118
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 1 cut(s) 61
MaeI CTAG 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 43
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 2 cut(s) 103, 166
MhlI GDGCHC 2 cut(s) 20, 41
MlsI TGGCCA 1 cut(s) 119
MluCI AATT 1 cut(s) 126
MluNI TGGCCA 1 cut(s) 119
MlyI GAGTC 1 cut(s) 60
MnlI CCTC 2 cut(s) 119, 124
Mox20I TGGCCA 1 cut(s) 119
MscI TGGCCA 1 cut(s) 119
Msp20I TGGCCA 1 cut(s) 119
MspI CCGG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 1 cut(s) 6
NlaIII CATG 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 43
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 20
PspEI GGTNACC 1 cut(s) 43
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SacI GAGCTC 1 cut(s) 20
Sau3AI GATC 1 cut(s) 6
SchI GAGTC 1 cut(s) 60
SduI GDGCHC 2 cut(s) 20, 41
SetI ASST 2 cut(s) 20, 96
SgeI CNNG 8 cut(s) 52, 60, 100, 107, 127, 133, 157, 163
Sse9I AATT 1 cut(s) 126
SsiI CCGC 2 cut(s) 105, 142
SspMI CTAG 1 cut(s) 169
SstI GAGCTC 1 cut(s) 20
TaaI ACNGT 1 cut(s) 43
TasI AATT 1 cut(s) 126
TseFI GTSAC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 2 cut(s) 19, 103
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.