AT4G34350

4-hydroxy-3-methylbut-2-enyl diphosphate reductase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
16428407 .. 16431144
2738 bp
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UTR
Exon/CDS
Intron
AT4G34350.1

Sequence Viewer

Length: 1401 bp
ATGGCTGTTGCGCTCCAATTCAGCCGATTATGCGTTCGACCGGATACTTTCGTGCGGGAGAATCATCTCTCTGGATCCGGATCTCTCCGCCGCCGGAAAGCTTTATCAGTCCGGTGCTCGTCTGGCGATGAGAACGCTCCTTCGCCATCGGTGGTGATGGACTCCGATTTCGACGCCAAGGTGTTCCGTAAGAACTTGACGAGAAGCGATAATTACAATCGTAAAGGGTTCGGTCATAAGGAGGAGACACTCAAGCTCATGAATCGAGAGTACACCAGTGATATATTGGAGACACTGAAAACAAATGGGTATACTTATTCTTGGGGAGATGTTACTGTGAAACTCGCTAAAGCATATGGTTTTTGCTGGGGTGTTGAGCGTGCTGTTCAGATTGCATATGAAGCACGAAAGCAGTTTCCAGAGGAGAGGCTTTGGATTACTAACGAAATCATTCATAACCCGACCGTCAATAAGAGGTTGGAAGATATGGATGTTAAAATTATTCCGGTTGAGGATTCAAAGAAACAGTTTGATGTAGTAGAGAAAGATGATGTGGTTATCCTTCCTGCGTTTGGAGCTGGTGTTGACGAGATGTATGTTCTTAATGATAAAAAGGTGCAAATTGTTGACACGACTTGTCCTTGGGTGACAAAGGTCTGGAACACGGTTGAGAAGCACAAGAAGGGGGAATACACATCAGTAATCCATGGTAAATATAATCATGAAGAGACGATTGCAACTGCGTCTTTTGCAGGAAAGTACATCATTGTAAAGAACATGAAAGAGGCAAATTACGTTTGTGATTACATTCTCGGTGGCCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAGAAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTGTCAAAGTTGGTATTGCAAACCAAACAACGATGCTAAAGGGAGAAACAGAGGAGATAGGAAGATTACTCGAGACAACAATGATGCGCAAGTATGGAGTGGAAAATGTAAGCGGACATTTCATCAGCTTCAACACAATATGCGACGCTACTCAAGAGCGACAAGACGCAATCTATGAGCTAGTGGAAGAGAAGATTGACCTCATGCTAGTGGTTGGCGGATGGAATTCAAGTAACACCTCTCACCTTCAGGAAATCTCAGAGGCACGGGGAATCCCATCTTACTGGATCGATAGTGAGAAACGGATAGGACCTGGGAATAAAATAGCCTATAAGCTCCACTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAGGTCGTGGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACGTGAAGAGTTATTGCAGCTGGCTTGA

Protein Analysis

466

Amino Acids

52.78

Weight (kDa)

5.76

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LYTB PF02401 113 - 451 2e-80 LytB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 995
AccI GTMKAC 1 cut(s) 311
AccIII TCCGGA 1 cut(s) 77
AciI CCGC 5 cut(s) 55, 88, 91, 1020, 1125
AclWI GGATC 6 cut(s) 69, 82, 88, 838, 887, 1202
AcoI YGGCCR 1 cut(s) 817
AcsI RAATTY 2 cut(s) 863, 1132
AcuI CTGAAG 1 cut(s) 1139
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 2 cut(s) 272, 761
AfiI CCNNNNNNNGG 2 cut(s) 572, 1333
AgsI TTSAA 4 cut(s) 519, 868, 1039, 1137
AjnI CCWGG 1 cut(s) 1219
AluBI AGCT 8 cut(s) 101, 256, 578, 837, 1035, 1087, 1243, 1393
AluI AGCT 8 cut(s) 101, 256, 578, 837, 1035, 1087, 1243, 1393
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 4 cut(s) 239, 284, 722, 974
AlwI GGATC 6 cut(s) 69, 82, 88, 838, 887, 1202
Ama87I CYCGRG 1 cut(s) 977
Aor13HI TCCGGA 1 cut(s) 77
AoxI GGCC 1 cut(s) 817
ApeKI GCWGC 1 cut(s) 1390
ApoI RAATTY 2 cut(s) 863, 1132
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
Asp700I GAANNNNTTC 4 cut(s) 450, 887, 1275, 1361
AspLEI GCGC 2 cut(s) 13, 996
AspS9I GGNCC 2 cut(s) 1217, 1289
AsuC2I CCSGG 1 cut(s) 1328
AsuHPI GGTGA 4 cut(s) 166, 658, 1142, 1366
AsuII TTCGAA 1 cut(s) 881
AvaI CYCGRG 1 cut(s) 977
AvaII GGWCC 2 cut(s) 1217, 1289
BaeI ACNNNNGTAYC 2 cut(s) 36, 69
BalI TGGCCA 1 cut(s) 819
BamHI GGATCC 1 cut(s) 74
BarI GAAGNNNNNNTAC 2 cut(s) 674, 706
Bbv12I GWGCWC 1 cut(s) 119
BccI CCATC 5 cut(s) 151, 154, 821, 1122, 1192
BciT130I CCWGG 1 cut(s) 1221
BciVI GTATCC 1 cut(s) 37
BcnI CCSGG 1 cut(s) 1328
BcoDI GTCTC 4 cut(s) 239, 284, 722, 974
BfaI CTAG 3 cut(s) 834, 1088, 1115
BfuI GTATCC 1 cut(s) 37
BisI GCNGC 2 cut(s) 91, 1391
BlsI GCNGC 2 cut(s) 92, 1392
Bme1390I CCNGG 2 cut(s) 1221, 1328
Bme18I GGWCC 2 cut(s) 1217, 1289
BmeT110I CYCGRG 1 cut(s) 977
BmgT120I GGNCC 2 cut(s) 1217, 1289
BmiI GGNNCC 2 cut(s) 76, 1290
BmrFI CCNGG 2 cut(s) 1221, 1328
BmsI GCATC 4 cut(s) 930, 981, 1328, 1336
BoxI GACNNNNGTC 1 cut(s) 653
Bpu14I TTCGAA 1 cut(s) 881
BpuEI CTTGAG 2 cut(s) 236, 1044
BpuMI CCSGG 1 cut(s) 1328
Bsa29I ATCGAT 1 cut(s) 1197
BsaBI GATNNNNATC 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 5 cut(s) 177, 641, 706, 1220, 1326
BsaWI WCCGGW 4 cut(s) 40, 77, 111, 505
BsaXI ACNNNNNCTCC 4 cut(s) 567, 597, 1245, 1275
Bsc4I CCNNNNNNNGG 2 cut(s) 572, 1333
Bse1I ACTGG 3 cut(s) 276, 1196, 1263
Bse8I GATNNNNATC 1 cut(s) 79
BseAI TCCGGA 1 cut(s) 77
BseBI CCWGG 1 cut(s) 1221
BseCI ATCGAT 1 cut(s) 1197
BseDI CCNNGG 5 cut(s) 177, 641, 706, 1220, 1326
BseGI GGATG 2 cut(s) 496, 1133
BseJI GATNNNNATC 1 cut(s) 79
BseLI CCNNNNNNNGG 2 cut(s) 572, 1333
BseMII CTCAG 1 cut(s) 1179
BseNI ACTGG 3 cut(s) 276, 1196, 1263
BseRI GAGGAG 4 cut(s) 257, 437, 863, 974
BseYI CCCAGC 1 cut(s) 366
Bsh1285I CGRYCG 2 cut(s) 41, 465
BshFI GGCC 1 cut(s) 819
BshVI ATCGAT 1 cut(s) 1197
BsiEI CGRYCG 2 cut(s) 41, 465
BsiHKAI GWGCWC 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 977
BsiSI CCGG 6 cut(s) 41, 78, 94, 112, 506, 1328
BslFI GGGAC 1 cut(s) 1302
BslI CCNNNNNNNGG 2 cut(s) 572, 1333
BsmAI GTCTC 4 cut(s) 239, 284, 722, 974
BsmBI CGTCTC 1 cut(s) 722
BsmFI GGGAC 1 cut(s) 1302
BsnI GGCC 1 cut(s) 819
BsoBI CYCGRG 1 cut(s) 977
Bsp119I TTCGAA 1 cut(s) 881
Bsp1286I GDGCHC 1 cut(s) 119
Bsp13I TCCGGA 1 cut(s) 77
Bsp143I GATC 5 cut(s) 74, 80, 830, 892, 1194
Bsp19I CCATGG 1 cut(s) 706
BspACI CCGC 5 cut(s) 55, 88, 91, 1020, 1125
BspANI GGCC 1 cut(s) 819
BspCNI CTCAG 1 cut(s) 1178
BspDI ATCGAT 1 cut(s) 1197
BspEI TCCGGA 1 cut(s) 77
BspHI TCATGA 2 cut(s) 258, 721
BspLI GGNNCC 2 cut(s) 76, 1290
BspPI GGATC 6 cut(s) 69, 82, 88, 838, 887, 1202
BspT104I TTCGAA 1 cut(s) 881
BsrI ACTGG 3 cut(s) 276, 1196, 1263
BssECI CCNNGG 5 cut(s) 177, 641, 706, 1220, 1326
BssMI GATC 5 cut(s) 74, 80, 830, 892, 1194
BssNAI GTATAC 1 cut(s) 312
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 3 cut(s) 177, 641, 706
Bst1107I GTATAC 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 1221
Bst4CI ACNGT 4 cut(s) 337, 466, 528, 667
Bst6I CTCTTC 3 cut(s) 720, 1089, 1374
BstACI GRCGYC 1 cut(s) 174
BstBI TTCGAA 1 cut(s) 881
BstC8I GCNNGC 2 cut(s) 381, 1395
BstDEI CTNAG 1 cut(s) 1165
BstDSI CCRYGG 1 cut(s) 706
BstF5I GGATG 2 cut(s) 496, 1133
BstHHI GCGC 2 cut(s) 13, 996
BstKTI GATC 5 cut(s) 77, 83, 833, 895, 1197
BstMAI GTCTC 4 cut(s) 239, 284, 722, 974
BstMBI GATC 5 cut(s) 74, 80, 830, 892, 1194
BstMCI CGRYCG 2 cut(s) 41, 465
BstMWI GCNNNNNNNGC 5 cut(s) 30, 123, 401, 575, 749
BstNI CCWGG 1 cut(s) 1221
BstPAI GACNNNNGTC 1 cut(s) 653
BstSCI CCNGG 2 cut(s) 1219, 1326
BstX2I RGATCY 3 cut(s) 74, 80, 830
BstXI CCANNNNNNTGG 2 cut(s) 827, 1191
BstYI RGATCY 3 cut(s) 74, 80, 830
BstZ17I GTATAC 1 cut(s) 312
Bsu15I ATCGAT 1 cut(s) 1197
BsuI GTATCC 1 cut(s) 37
BsuRI GGCC 1 cut(s) 819
BsuTUI ATCGAT 1 cut(s) 1197
BtgI CCRYGG 1 cut(s) 706
BtgZI GCGATG 1 cut(s) 141
BtsCI GGATG 2 cut(s) 496, 1133
BtsIMutI CAGTG 2 cut(s) 283, 293
Cac8I GCNNGC 2 cut(s) 381, 1395
CciI TCATGA 2 cut(s) 258, 721
CfoI GCGC 2 cut(s) 13, 996
Cfr13I GGNCC 2 cut(s) 1217, 1289
ClaI ATCGAT 1 cut(s) 1197
CseI GACGC 4 cut(s) 182, 732, 1061, 1082
Csp6I GTAC 2 cut(s) 271, 760
CviAII CATG 6 cut(s) 259, 707, 722, 778, 856, 1111
CviQI GTAC 2 cut(s) 271, 760
DdeI CTNAG 1 cut(s) 1165
DpnI GATC 5 cut(s) 76, 82, 832, 894, 1196
DpnII GATC 5 cut(s) 74, 80, 830, 892, 1194
EaeI YGGCCR 1 cut(s) 817
Eam1104I CTCTTC 3 cut(s) 720, 1089, 1374
EarI CTCTTC 3 cut(s) 720, 1089, 1374
EciI GGCGGA 2 cut(s) 77, 1140
Eco130I CCWWGG 3 cut(s) 177, 641, 706
Eco47I GGWCC 2 cut(s) 1217, 1289
Eco57I CTGAAG 1 cut(s) 1139
Eco88I CYCGRG 1 cut(s) 977
EcoO109I RGGNCCY 1 cut(s) 1217
EcoRI GAATTC 1 cut(s) 1132
EcoRII CCWGG 1 cut(s) 1219
EcoT14I CCWWGG 3 cut(s) 177, 641, 706
ErhI CCWWGG 3 cut(s) 177, 641, 706
Esp3I CGTCTC 1 cut(s) 722
FaeI CATG 6 cut(s) 262, 710, 725, 781, 859, 1114
FalI AAGNNNNNCTT 2 cut(s) 1259, 1291
FaqI GGGAC 1 cut(s) 1302
FatI CATG 6 cut(s) 258, 706, 721, 777, 855, 1110
FauI CCCGC 1 cut(s) 48
FauNDI CATATG 2 cut(s) 355, 397
FblI GTMKAC 1 cut(s) 311
Fnu4HI GCNGC 2 cut(s) 91, 1391
FokI GGATG 2 cut(s) 503, 1140
Fsp4HI GCNGC 2 cut(s) 91, 1391
FspBI CTAG 3 cut(s) 834, 1088, 1115
FspI TGCGCA 1 cut(s) 995
GlaI GCGC 2 cut(s) 12, 995
GluI GCNGC 2 cut(s) 91, 1391
GsaI CCCAGC 1 cut(s) 370
HaeIII GGCC 1 cut(s) 819
HapII CCGG 6 cut(s) 41, 78, 94, 112, 506, 1328
HgaI GACGC 4 cut(s) 182, 732, 1061, 1082
HhaI GCGC 2 cut(s) 13, 996
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 6 cut(s) 262, 710, 725, 781, 859, 1114
Hin6I GCGC 2 cut(s) 11, 994
HinP1I GCGC 2 cut(s) 11, 994
HincII GTYRAC 2 cut(s) 586, 628
HindII GTYRAC 2 cut(s) 586, 628
HindIII AAGCTT 1 cut(s) 99
HinfI GANTC 5 cut(s) 61, 161, 262, 515, 1179
HpaII CCGG 6 cut(s) 41, 78, 94, 112, 506, 1328
HphI GGTGA 4 cut(s) 166, 658, 1142, 1366
Hpy166II GTNNAC 4 cut(s) 273, 312, 586, 628
Hpy188I TCNGA 3 cut(s) 166, 390, 1168
Hpy8I GTNNAC 4 cut(s) 273, 312, 586, 628
Hpy99I CGWCG 2 cut(s) 176, 1055
HpyAV CCTTC 7 cut(s) 150, 572, 676, 877, 1163, 1261, 1351
HpyCH4III ACNGT 4 cut(s) 337, 466, 528, 667
HpyCH4IV ACGT 2 cut(s) 795, 1375
HpyCH4V TGCA 7 cut(s) 395, 619, 737, 752, 926, 1319, 1390
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 123, 401, 575, 749
HpyF3I CTNAG 1 cut(s) 1165
HpySE526I ACGT 2 cut(s) 795, 1375
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 6 cut(s) 262, 710, 725, 781, 859, 1114
HspAI GCGC 2 cut(s) 11, 994
Kpn2I TCCGGA 1 cut(s) 77
Kzo9I GATC 5 cut(s) 74, 80, 830, 892, 1194
LmnI GCTCC 5 cut(s) 18, 142, 575, 842, 1248
LweI GCATC 4 cut(s) 930, 981, 1328, 1336
MaeI CTAG 3 cut(s) 834, 1088, 1115
MaeII ACGT 2 cut(s) 795, 1375
MaeIII GTNAC 4 cut(s) 331, 646, 1139, 1306
MalI GATC 5 cut(s) 76, 82, 832, 894, 1196
MboI GATC 5 cut(s) 74, 80, 830, 892, 1194
MboII GAAGA 7 cut(s) 494, 737, 981, 1106, 1111, 1355, 1391
MflI RGATCY 3 cut(s) 74, 80, 830
MhlI GDGCHC 1 cut(s) 119
MlsI TGGCCA 1 cut(s) 819
MluCI AATT 8 cut(s) 17, 211, 498, 621, 790, 863, 876, 1132
MluNI TGGCCA 1 cut(s) 819
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 459
Mox20I TGGCCA 1 cut(s) 819
MroI TCCGGA 1 cut(s) 77
MroXI GAANNNNTTC 4 cut(s) 450, 887, 1275, 1361
MscI TGGCCA 1 cut(s) 819
MseI TTAA 3 cut(s) 495, 603, 1371
MslI CAYNNNNRTG 1 cut(s) 1115
Msp20I TGGCCA 1 cut(s) 819
MspA1I CMGCKG 1 cut(s) 1393
MspI CCGG 6 cut(s) 41, 78, 94, 112, 506, 1328
MspR9I CCNGG 2 cut(s) 1221, 1328
MvaI CCWGG 1 cut(s) 1221
MwoI GCNNNNNNNGC 5 cut(s) 30, 123, 401, 575, 749
NciI CCSGG 1 cut(s) 1328
NcoI CCATGG 1 cut(s) 706
NdeI CATATG 2 cut(s) 355, 397
NdeII GATC 5 cut(s) 74, 80, 830, 892, 1194
NlaIII CATG 6 cut(s) 262, 710, 725, 781, 859, 1114
NlaIV GGNNCC 2 cut(s) 76, 1290
NmuCI GTSAC 2 cut(s) 646, 1306
NsbI TGCGCA 1 cut(s) 995
NspV TTCGAA 1 cut(s) 881
PaeR7I CTCGAG 1 cut(s) 977
PagI TCATGA 2 cut(s) 258, 721
PdmI GAANNNNTTC 4 cut(s) 450, 887, 1275, 1361
PfeI GAWTC 4 cut(s) 61, 262, 515, 1179
PflFI GACNNNGTC 1 cut(s) 908
PkrI GCNGC 2 cut(s) 92, 1392
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PpuMI RGGWCCY 1 cut(s) 1217
PshAI GACNNNNGTC 1 cut(s) 653
Psp5II RGGWCCY 1 cut(s) 1217
Psp6I CCWGG 1 cut(s) 1219
PspFI CCCAGC 1 cut(s) 366
PspGI CCWGG 1 cut(s) 1219
PspN4I GGNNCC 2 cut(s) 76, 1290
PspPI GGNCC 2 cut(s) 1217, 1289
PspPPI RGGWCCY 1 cut(s) 1217
PsuI RGATCY 3 cut(s) 74, 80, 830
PsyI GACNNNGTC 1 cut(s) 908
PvuII CAGCTG 1 cut(s) 1393
RsaI GTAC 2 cut(s) 272, 761
RsaNI GTAC 2 cut(s) 271, 760
RseI CAYNNNNRTG 1 cut(s) 1115
SaqAI TTAA 3 cut(s) 495, 603, 1371
SatI GCNGC 2 cut(s) 91, 1391
Sau3AI GATC 5 cut(s) 74, 80, 830, 892, 1194
Sau96I GGNCC 2 cut(s) 1217, 1289
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 1221, 1328
SduI GDGCHC 1 cut(s) 119
SfaNI GCATC 4 cut(s) 930, 981, 1328, 1336
Sfr274I CTCGAG 1 cut(s) 977
SfuI TTCGAA 1 cut(s) 881
SinI GGWCC 2 cut(s) 1217, 1289
SlaI CTCGAG 1 cut(s) 977
SmiMI CAYNNNNRTG 1 cut(s) 1115
SmlI CTYRAG 3 cut(s) 251, 977, 1059
SmoI CTYRAG 3 cut(s) 251, 977, 1059
Sse9I AATT 8 cut(s) 17, 211, 498, 621, 790, 863, 876, 1132
SsiI CCGC 5 cut(s) 55, 88, 91, 1020, 1125
SspMI CTAG 3 cut(s) 834, 1088, 1115
StyD4I CCNGG 2 cut(s) 1219, 1326
StyI CCWWGG 3 cut(s) 177, 641, 706
TaaI ACNGT 4 cut(s) 337, 466, 528, 667
TaiI ACGT 2 cut(s) 798, 1378
TaqI TCGA 9 cut(s) 37, 171, 265, 881, 891, 978, 1197, 1263, 1365
TaqII GACCGA 1 cut(s) 221
TasI AATT 8 cut(s) 17, 211, 498, 621, 790, 863, 876, 1132
TatI WGTACW 2 cut(s) 270, 759
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 4 cut(s) 61, 262, 515, 1179
Tru1I TTAA 3 cut(s) 495, 603, 1371
Tru9I TTAA 3 cut(s) 495, 603, 1371
TscAI CASTG 2 cut(s) 283, 300
TseFI GTSAC 2 cut(s) 646, 1306
TseI GCWGC 1 cut(s) 1390
Tsp45I GTSAC 2 cut(s) 646, 1306
TspDTI ATGAA 7 cut(s) 275, 414, 443, 738, 794, 844, 1018
TspGWI ACGGA 2 cut(s) 176, 1225
TspRI CASTG 2 cut(s) 283, 300
Tth111I GACNNNGTC 1 cut(s) 908
VpaK11BI GGWCC 2 cut(s) 1217, 1289
XapI RAATTY 2 cut(s) 863, 1132
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XhoI CTCGAG 1 cut(s) 977
XmiI GTMKAC 1 cut(s) 311
XmnI GAANNNNTTC 4 cut(s) 450, 887, 1275, 1361
XspI CTAG 3 cut(s) 834, 1088, 1115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.