Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019563

Physical Location & Seq

Genomic Coordinates Reverse (-)

18273829 .. 18275216

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39260.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTCTGAAGTTGAGTACCGGTGCTTTGTCGGCGGCCTTGCCTGGGCCACCAATGATGAAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACCTTCAAGGACGAGAAAGCCATGAGGGATGCGATTGAAGAGATGAACGGTAAAGAGCTCGATGGACGTGTCATCACCGTGAACGAGGCTCAGTCGAGAGGTAGCGGCGGTGGCGGAGGAGGCCGTGGTGGAAGCGGTGGTGGTTACCGCAGCGGAGGCGGTGGTGGATACTCAGGAGGCGGTGGCGGCGGATACTCAGGAGGAGGCGGTGGTGGTTACGAGAGACGTAGCGGAGGTTACGGATCTGGTGGAGGCGGTGGTGGCCGAGGATACGGTGGTGGTGGACGCCGTGAGGGAGGTGGCTACGGAGGCGGTGATGGTGGAAGTTACGGAGGCGGTGGTGGCGGCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000380 GO:0000398 GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0005794 GO:0005886 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016071 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0033993 GO:0034641 GO:0042221 GO:0042579 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0048046 GO:0050896 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0097305 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

169

Amino Acids

16.58

Weight (kDa)

5.58

Isoelectric Point (pI)

60.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_7	PF16367	7 - 70	3.9e-07	RNA recognition motif
RRM_1	PF00076	9 - 78	2.2e-24	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39260 AT4G39260 AT4G39260 AT4G39260
rosa_chinensis	RchiOBHm_Chr1g0378041
rosa_samantha	Rh1AG424700
rosa_wichuraiana	Rw1G037330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	123
AclWI	GGATC	1 cut(s)	406
AcoI	YGGCCR	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	27
AcyI	GRCGYC	1 cut(s)	442
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	43
AflIII	ACRYGT	1 cut(s)	223
AgeI	ACCGGT	1 cut(s)	18
AgsI	TTSAA	3 cut(s)	68, 163, 194
AjiI	CACGTC	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	1 cut(s)	406
AoxI	GGCC	4 cut(s)	34, 45, 277, 418
ApeKI	GCWGC	1 cut(s)	306
AsiGI	ACCGGT	1 cut(s)	18
Asp700I	GAANNNNTTC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	45
AsuHPI	GGTGA	3 cut(s)	148, 223, 482
BaeI	ACNNNNGTAYC	2 cut(s)	418, 451
BanII	GRGCYC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	318
BccI	CCATC	2 cut(s)	212, 467
BceAI	ACGGC	2 cut(s)	264, 429
BciT130I	CCWGG	1 cut(s)	43
BciVI	GTATCC	3 cut(s)	317, 341, 419
BcoDI	GTCTC	1 cut(s)	373
BfuI	GTATCC	3 cut(s)	317, 341, 419
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	5 cut(s)	34, 262, 307, 343, 502
BlsI	GCNGC	5 cut(s)	35, 263, 308, 344, 503
Bme1390I	CCNGG	1 cut(s)	43
BmgBI	CACGTC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	175
Bsa29I	ATCGAT	1 cut(s)	99
BsaBI	GATNNNNATC	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	442
BsaJI	CCNNGG	3 cut(s)	42, 280, 421
BsaWI	WCCGGW	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse118I	RCCGGY	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	43
BseCI	ATCGAT	1 cut(s)	99
BseDI	CCNNGG	3 cut(s)	42, 280, 421
BseGI	GGATG	1 cut(s)	190
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	3 cut(s)	260, 342, 366
BseRI	GAGGAG	2 cut(s)	288, 372
BseXI	GCAGC	1 cut(s)	318
Bsh1236I	CGCG	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	4 cut(s)	36, 47, 279, 420
BshTI	ACCGGT	1 cut(s)	18
BshVI	ATCGAT	1 cut(s)	99
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	373
BsmBI	CGTCTC	1 cut(s)	373
BsnI	GGCC	4 cut(s)	36, 47, 279, 420
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	4 cut(s)	61, 108, 134, 398
BspANI	GGCC	4 cut(s)	36, 47, 279, 420
BspCNI	CTCAG	3 cut(s)	259, 341, 365
BspDI	ATCGAT	1 cut(s)	99
BspFNI	CGCG	1 cut(s)	123
BspPI	GGATC	1 cut(s)	406
BsrFI	RCCGGY	1 cut(s)	18
BssAI	RCCGGY	1 cut(s)	18
BssECI	CCNNGG	3 cut(s)	42, 280, 421
BssMI	GATC	4 cut(s)	61, 108, 134, 398
BssNI	GRCGYC	1 cut(s)	442
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	4 cut(s)	84, 206, 235, 431
Bst6I	CTCTTC	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	442
BstDEI	CTNAG	4 cut(s)	105, 246, 328, 352
BstDSI	CCRYGG	1 cut(s)	280
BstEII	GGTNACC	1 cut(s)	299
BstF5I	GGATG	1 cut(s)	190
BstFNI	CGCG	1 cut(s)	123
BstKTI	GATC	4 cut(s)	64, 111, 137, 401
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	4 cut(s)	61, 108, 134, 398
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	8 cut(s)	30, 267, 276, 312, 342, 417, 465, 498
BstNI	CCWGG	1 cut(s)	43
BstPI	GGTNACC	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	41
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	318
BstX2I	RGATCY	2 cut(s)	61, 398
BstYI	RGATCY	2 cut(s)	61, 398
Bsu15I	ATCGAT	1 cut(s)	99
BsuI	GTATCC	3 cut(s)	317, 341, 419
BsuRI	GGCC	4 cut(s)	36, 47, 279, 420
BsuTUI	ATCGAT	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	280
BtrI	CACGTC	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	190
Cfr10I	RCCGGY	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	45
ClaI	ATCGAT	1 cut(s)	99
CseI	GACGC	1 cut(s)	450
Csp6I	GTAC	1 cut(s)	16
CspAI	ACCGGT	1 cut(s)	18
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	9 cut(s)	36, 47, 176, 214, 245, 279, 420, 459, 504
CviKI_1	RGCY	9 cut(s)	36, 47, 176, 214, 245, 279, 420, 459, 504
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	4 cut(s)	105, 246, 328, 352
DpnI	GATC	4 cut(s)	63, 110, 136, 400
DpnII	GATC	4 cut(s)	61, 108, 134, 398
EaeI	YGGCCR	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
EciI	GGCGGA	2 cut(s)	285, 360
Ecl136II	GAGCTC	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	216
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	27
Eco91I	GGTNACC	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	214
EcoO65I	GGTNACC	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	216
Esp3I	CGTCTC	1 cut(s)	373
FaeI	CATG	1 cut(s)	181
FaiI	YATR	1 cut(s)	179
FatI	CATG	1 cut(s)	177
Fnu4HI	GCNGC	5 cut(s)	34, 262, 307, 343, 502
FokI	GGATG	1 cut(s)	197
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	5 cut(s)	34, 262, 307, 343, 502
GluI	GCNGC	5 cut(s)	34, 262, 307, 343, 502
HaeIII	GGCC	4 cut(s)	36, 47, 279, 420
HapII	CCGG	1 cut(s)	19
HgaI	GACGC	1 cut(s)	450
Hin1I	GRCGYC	1 cut(s)	442
Hin1II	CATG	1 cut(s)	181
HinfI	GANTC	3 cut(s)	101, 144, 150
HpaII	CCGG	1 cut(s)	19
HphI	GGTGA	3 cut(s)	148, 223, 482
Hpy166II	GTNNAC	2 cut(s)	238, 440
Hpy188I	TCNGA	2 cut(s)	7, 149
Hpy188III	TCNNGA	3 cut(s)	252, 330, 354
Hpy8I	GTNNAC	2 cut(s)	238, 440
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	4 cut(s)	84, 206, 235, 431
HpyCH4IV	ACGT	4 cut(s)	74, 93, 223, 382
HpyF10VI	GCNNNNNNNGC	8 cut(s)	30, 267, 276, 312, 342, 417, 465, 498
HpyF3I	CTNAG	4 cut(s)	105, 246, 328, 352
HpySE526I	ACGT	4 cut(s)	74, 93, 223, 382
Hsp92I	GRCGYC	1 cut(s)	442
Hsp92II	CATG	1 cut(s)	181
Kzo9I	GATC	4 cut(s)	61, 108, 134, 398
LpnPI	CCDG	7 cut(s)	28, 32, 55, 315, 339, 387, 490
Lsp1109I	GCAGC	1 cut(s)	318
LweI	GCATC	1 cut(s)	175
MaeII	ACGT	4 cut(s)	74, 93, 223, 382
MaeIII	GTNAC	5 cut(s)	154, 299, 371, 392, 482
MalI	GATC	4 cut(s)	63, 110, 136, 400
MboI	GATC	4 cut(s)	61, 108, 134, 398
MboII	GAAGA	4 cut(s)	56, 71, 144, 206
MflI	RGATCY	2 cut(s)	61, 398
MhlI	GDGCHC	1 cut(s)	216
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	309
MspI	CCGG	1 cut(s)	19
MspR9I	CCNGG	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	43
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	8 cut(s)	30, 267, 276, 312, 342, 417, 465, 498
NdeII	GATC	4 cut(s)	61, 108, 134, 398
NlaIII	CATG	1 cut(s)	181
NmeAIII	GCCGAG	1 cut(s)	446
NmuCI	GTSAC	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	3 cut(s)	101, 144, 150
PinAI	ACCGGT	1 cut(s)	18
PkrI	GCNGC	5 cut(s)	35, 263, 308, 344, 503
Psp124BI	GAGCTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	41
PspEI	GGTNACC	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	45
PsuI	RGATCY	2 cut(s)	61, 398
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	233
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	5 cut(s)	34, 262, 307, 343, 502
Sau3AI	GATC	4 cut(s)	61, 108, 134, 398
Sau96I	GGNCC	1 cut(s)	45
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	9 cut(s)	77, 96, 161, 216, 226, 259, 385, 394, 457
SfaNI	GCATC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	233
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	4 cut(s)	84, 206, 235, 431
TaiI	ACGT	4 cut(s)	77, 96, 226, 385
TaqI	TCGA	3 cut(s)	99, 216, 251
TauI	GCSGC	4 cut(s)	36, 264, 345, 504
TfiI	GAWTC	3 cut(s)	101, 144, 150
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	306
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	72, 215
TspGWI	ACGGA	3 cut(s)	411, 477, 501
XmnI	GAANNNNTTC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.