Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019563

Physical Location & Seq

Genomic Coordinates Forward (+)

64662491 .. 64666694

Gene Structure 4204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60147

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTCGGAAGAACCAGAGTATCGTTGCTTTATTGGTGGCCTTGCCTGGTCAACATCTGATAGGAGTCTAAAAGAAGCTTTTGACAAGCATGGGAAGCTTGTTGAAGCCAAGGTTGTTGTTGATAAGTTGTCGGGGCGCTCTCGTGGATATGGGTTTATCACTTTTGCTGATAAAAAAGCAATGGAAGAGGCAATTGAGGAGATGAATGGGATCGATTTAGATGGTCGAACTATAACTGTTGAAAAAGCTCATCCCCACCAAGGTTCAGGTAGTGATTATGGAGGTGGACGTGGATCTGATGGTGGAGGAAGTTGCTTCAAGTGTGGCAAGCCAGGACATTTTGCAAGGGAATGTCCTAGTAGTGAAGTTTCAAGAGGAGGTGGCGGCAGGTATGGTGGTAGGGATGATAAGTACAGTGGTGGAGAAGATTACTTCAAGTGTGGCAAGCCAGGACATTTTGCAAGGGATCGGAGTATCCTAGTAGTGAAGTTTCCAGAGGTGGCAGCGGCAGGTGTGGTGATAGGGATGATAAGTACAGTGGAGGAGGAGGAGGTGGTTGTGGTAGCCGCAGGGATTCTGGTTCTGGTGATTGTTCAAGCTCTGGAAGCGATCGTTTTAGTTGTGACCGCTCTGGTCCATATGAGCGTCGGGAGACAGGAGGTTACCGTTCTGAATAGAATCATGCTTTGGGGTCACATAAAATTTCCTCAAGTTTACGTAACAGTTCTTTTCACCACAGTTTGTTGGGTACTCGCAGAATTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

255

Amino Acids

27.53

Weight (kDa)

6.01

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	10 - 79	5e-20	RNA recognition motif
zf-CCHC	PF00098	104 - 120	6.8e-08	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39260 AT4G39260 AT4G39260 AT4G39260
rosa_chinensis	RchiOBHm_Chr1g0378041
rosa_samantha	Rh1AG424700
rosa_wichuraiana	Rw1G037330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	500
Acc36I	ACCTGC	2 cut(s)	378, 500
AccBSI	CCGCTC	1 cut(s)	629
AciI	CCGC	4 cut(s)	384, 506, 567, 627
AclWI	GGATC	3 cut(s)	218, 301, 474
AcsI	RAATTY	2 cut(s)	701, 758
AfaI	GTAC	3 cut(s)	413, 535, 750
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	6 cut(s)	104, 242, 319, 372, 436, 596
AjiI	CACGTC	1 cut(s)	290
AjnI	CCWGG	3 cut(s)	44, 331, 448
AjuI	GAANNNNNNNTTGG	2 cut(s)	670, 702
AluBI	AGCT	4 cut(s)	77, 97, 248, 599
AluI	AGCT	4 cut(s)	77, 97, 248, 599
Alw26I	GTCTC	1 cut(s)	646
AlwI	GGATC	3 cut(s)	218, 301, 474
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	503
ApoI	RAATTY	2 cut(s)	701, 758
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	634
AsuHPI	GGTGA	3 cut(s)	529, 598, 724
AvaII	GGWCC	1 cut(s)	634
BaeI	ACNNNNGTAYC	1 cut(s)	35
BauI	CACGAG	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	515
BccI	CCATC	2 cut(s)	215, 293
BciT130I	CCWGG	3 cut(s)	46, 333, 450
BciVI	GTATCC	1 cut(s)	485
BcoDI	GTCTC	1 cut(s)	646
BfaI	CTAG	2 cut(s)	357, 479
BfoI	RGCGCY	1 cut(s)	139
BfuAI	ACCTGC	2 cut(s)	378, 500
BfuI	GTATCC	1 cut(s)	485
BisI	GCNGC	4 cut(s)	385, 504, 507, 567
BlsI	GCNGC	4 cut(s)	386, 505, 508, 568
Bme1390I	CCNGG	3 cut(s)	46, 333, 450
Bme18I	GGWCC	1 cut(s)	634
BmgBI	CACGTC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	634
BmrFI	CCNGG	3 cut(s)	46, 333, 450
BpuEI	CTTGAG	1 cut(s)	693
Bsa29I	ATCGAT	1 cut(s)	213
BsaAI	YACGTR	1 cut(s)	718
BsaJI	CCNNGG	2 cut(s)	108, 259
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse3DI	GCAATG	1 cut(s)	186
BseBI	CCWGG	3 cut(s)	46, 333, 450
BseCI	ATCGAT	1 cut(s)	213
BseDI	CCNNGG	2 cut(s)	108, 259
BseGI	GGATG	3 cut(s)	250, 409, 531
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	186
BseRI	GAGGAG	5 cut(s)	212, 390, 557, 560, 563
BseXI	GCAGC	1 cut(s)	515
Bsh1285I	CGRYCG	1 cut(s)	612
BshFI	GGCC	1 cut(s)	39
BshVI	ATCGAT	1 cut(s)	213
BsiEI	CGRYCG	1 cut(s)	612
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	646
BsnI	GGCC	1 cut(s)	39
Bsp143I	GATC	4 cut(s)	210, 293, 466, 609
BspACI	CCGC	4 cut(s)	384, 506, 567, 627
BspANI	GGCC	1 cut(s)	39
BspDI	ATCGAT	1 cut(s)	213
BspMI	ACCTGC	2 cut(s)	378, 500
BspPI	GGATC	3 cut(s)	218, 301, 474
BsrBI	CCGCTC	1 cut(s)	629
BsrDI	GCAATG	1 cut(s)	186
BssECI	CCNNGG	2 cut(s)	108, 259
BssMI	GATC	4 cut(s)	210, 293, 466, 609
BssSI	CACGAG	1 cut(s)	141
BssT1I	CCWWGG	2 cut(s)	108, 259
Bst2BI	CACGAG	1 cut(s)	141
Bst2UI	CCWGG	3 cut(s)	46, 333, 450
Bst4CI	ACNGT	6 cut(s)	238, 416, 538, 667, 724, 739
Bst6I	CTCTTC	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	718
BstC8I	GCNNGC	2 cut(s)	329, 446
BstEII	GGTNACC	1 cut(s)	661
BstF5I	GGATG	3 cut(s)	250, 409, 531
BstH2I	RGCGCY	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	4 cut(s)	213, 296, 469, 612
BstMAI	GTCTC	1 cut(s)	646
BstMBI	GATC	4 cut(s)	210, 293, 466, 609
BstMCI	CGRYCG	1 cut(s)	612
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 605
BstNI	CCWGG	3 cut(s)	46, 333, 450
BstPI	GGTNACC	1 cut(s)	661
BstSCI	CCNGG	3 cut(s)	44, 331, 448
BstSNI	TACGTA	1 cut(s)	718
BstV1I	GCAGC	1 cut(s)	515
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
Bsu15I	ATCGAT	1 cut(s)	213
BsuI	GTATCC	1 cut(s)	485
BsuRI	GGCC	1 cut(s)	39
BsuTUI	ATCGAT	1 cut(s)	213
BtrI	CACGTC	1 cut(s)	290
BtsCI	GGATG	3 cut(s)	250, 409, 531
BtsIMutI	CAGTG	2 cut(s)	421, 543
BveI	ACCTGC	2 cut(s)	378, 500
Cac8I	GCNNGC	2 cut(s)	329, 446
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	634
ClaI	ATCGAT	1 cut(s)	213
CseI	GACGC	1 cut(s)	634
Csp6I	GTAC	3 cut(s)	412, 534, 749
CviAII	CATG	2 cut(s)	89, 682
CviJI	RGCY	9 cut(s)	39, 77, 97, 107, 248, 331, 448, 566, 599
CviKI_1	RGCY	9 cut(s)	39, 77, 97, 107, 248, 331, 448, 566, 599
CviQI	GTAC	3 cut(s)	412, 534, 749
DpnI	GATC	4 cut(s)	212, 295, 468, 611
DpnII	GATC	4 cut(s)	210, 293, 466, 609
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco105I	TACGTA	1 cut(s)	718
Eco130I	CCWWGG	2 cut(s)	108, 259
Eco47I	GGWCC	1 cut(s)	634
Eco91I	GGTNACC	1 cut(s)	661
EcoO65I	GGTNACC	1 cut(s)	661
EcoRII	CCWGG	3 cut(s)	44, 331, 448
EcoT14I	CCWWGG	2 cut(s)	108, 259
ErhI	CCWWGG	2 cut(s)	108, 259
FaeI	CATG	2 cut(s)	92, 685
FaiI	YATR	9 cut(s)	90, 150, 233, 279, 393, 639, 641, 683, 698
FatI	CATG	2 cut(s)	88, 681
FauNDI	CATATG	1 cut(s)	639
Fnu4HI	GCNGC	4 cut(s)	385, 504, 507, 567
FokI	GGATG	3 cut(s)	237, 416, 538
Fsp4HI	GCNGC	4 cut(s)	385, 504, 507, 567
FspBI	CTAG	2 cut(s)	357, 479
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	4 cut(s)	385, 504, 507, 567
HaeII	RGCGCY	1 cut(s)	139
HaeIII	GGCC	1 cut(s)	39
HgaI	GACGC	1 cut(s)	634
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	92, 685
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	2 cut(s)	75, 95
HinfI	GANTC	3 cut(s)	64, 574, 678
HphI	GGTGA	3 cut(s)	529, 598, 724
Hpy166II	GTNNAC	3 cut(s)	51, 287, 715
Hpy188I	TCNGA	5 cut(s)	7, 58, 298, 471, 672
Hpy188III	TCNNGA	4 cut(s)	372, 494, 602, 649
Hpy8I	GTNNAC	3 cut(s)	51, 287, 715
Hpy99I	CGWCG	1 cut(s)	650
HpyCH4III	ACNGT	6 cut(s)	238, 416, 538, 667, 724, 739
HpyCH4IV	ACGT	2 cut(s)	289, 717
HpyCH4V	TGCA	2 cut(s)	344, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 605
HpySE526I	ACGT	2 cut(s)	289, 717
Hsp92II	CATG	2 cut(s)	92, 685
HspAI	GCGC	1 cut(s)	136
Kzo9I	GATC	4 cut(s)	210, 293, 466, 609
Lsp1109I	GCAGC	1 cut(s)	515
MaeI	CTAG	2 cut(s)	357, 479
MaeII	ACGT	2 cut(s)	289, 717
MaeIII	GTNAC	4 cut(s)	622, 661, 692, 718
MalI	GATC	4 cut(s)	212, 295, 468, 611
MbiI	CCGCTC	1 cut(s)	629
MboI	GATC	4 cut(s)	210, 293, 466, 609
MboII	GAAGA	3 cut(s)	20, 197, 437
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	1 cut(s)	293
MluCI	AATT	3 cut(s)	192, 701, 758
MlyI	GAGTC	1 cut(s)	73
MseI	TTAA	1 cut(s)	766
MspA1I	CMGCKG	1 cut(s)	506
MspR9I	CCNGG	3 cut(s)	46, 333, 450
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	3 cut(s)	46, 333, 450
MwoI	GCNNNNNNNGC	2 cut(s)	94, 605
NdeI	CATATG	1 cut(s)	639
NdeII	GATC	4 cut(s)	210, 293, 466, 609
NlaIII	CATG	2 cut(s)	92, 685
NmuCI	GTSAC	2 cut(s)	622, 692
PaqCI	CACCTGC	1 cut(s)	500
PfeI	GAWTC	2 cut(s)	574, 678
PkrI	GCNGC	4 cut(s)	386, 505, 508, 568
Ple19I	CGATCG	1 cut(s)	612
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
Ppu21I	YACGTR	1 cut(s)	718
Psp6I	CCWGG	3 cut(s)	44, 331, 448
PspEI	GGTNACC	1 cut(s)	661
PspGI	CCWGG	3 cut(s)	44, 331, 448
PspPI	GGNCC	1 cut(s)	634
PsuI	RGATCY	1 cut(s)	293
PvuI	CGATCG	1 cut(s)	612
RsaI	GTAC	3 cut(s)	413, 535, 750
RsaNI	GTAC	3 cut(s)	412, 534, 749
SaqAI	TTAA	1 cut(s)	766
SatI	GCNGC	4 cut(s)	385, 504, 507, 567
Sau3AI	GATC	4 cut(s)	210, 293, 466, 609
Sau96I	GGNCC	1 cut(s)	634
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	3 cut(s)	46, 333, 450
SinI	GGWCC	1 cut(s)	634
SmlI	CTYRAG	1 cut(s)	708
SmoI	CTYRAG	1 cut(s)	708
SnaBI	TACGTA	1 cut(s)	718
Sse9I	AATT	3 cut(s)	192, 701, 758
SsiI	CCGC	4 cut(s)	384, 506, 567, 627
SspMI	CTAG	2 cut(s)	357, 479
StyD4I	CCNGG	3 cut(s)	44, 331, 448
StyI	CCWWGG	2 cut(s)	108, 259
TaaI	ACNGT	6 cut(s)	238, 416, 538, 667, 724, 739
TaiI	ACGT	2 cut(s)	292, 720
TaqI	TCGA	2 cut(s)	213, 226
TasI	AATT	3 cut(s)	192, 701, 758
TatI	WGTACW	2 cut(s)	411, 533
TauI	GCSGC	3 cut(s)	387, 509, 569
TfiI	GAWTC	2 cut(s)	574, 678
Tru1I	TTAA	1 cut(s)	766
Tru9I	TTAA	1 cut(s)	766
TscAI	CASTG	2 cut(s)	421, 543
TseFI	GTSAC	2 cut(s)	622, 692
TseI	GCWGC	1 cut(s)	503
Tsp45I	GTSAC	2 cut(s)	622, 692
TspDTI	ATGAA	1 cut(s)	218
TspRI	CASTG	2 cut(s)	421, 543
VpaK11BI	GGWCC	1 cut(s)	634
XapI	RAATTY	2 cut(s)	701, 758
XspI	CTAG	2 cut(s)	357, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.