Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0019563

Physical Location & Seq

Genomic Coordinates Forward (+)

65001521 .. 65002746

Gene Structure 1226 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G037330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTCGGAAGAACCAGAGTATCGTTGCTTTATTGGTGGCCTTGCCTGGTCAACATCTGATAGGAGTCTAAAACAAGCTTTTGACAAGCATGGGAAGCTTGTTGAAGCCAAGGTTGTTGTTGATAAGTTGTCGGGGCGCTCTCGTGGATATGGGTTTATCACTTTTGCTGATAAAAAAGCAATGGAAGAGGCAATTGAGGAGATGAATGGGATCGATTTAGATGGTCGAACTATAACTGTTGAAAAAGCTCATCCCCACCAAGGTTCAGGTAGTGATTATGGAGGTGGACGTGGATCTGATGGTGGAGGAAGTTGCTTCAAGTGTGGCAAGCCAGGACATTTTGCAAGGGAATGTCCTAGTAGTGAAGTTTCAAGAGGAGGTGGCGGCAGGTATGGTGGTAGGGATGATAAGTACAGTGGTGGAGAAGATTACTTCAAGTGTGGCAAGCCAGGACATTTTGCAAGGGAGTGTCCTAGTAGTGAAGTTTCCAGAGGTGGCAGCGGCAGGTATGGTGATAGGGATGATAAGTACAGTGGAGGAGGAGGAGGTGGTTGTGGTAGCCGCAGGGGTTCTGGTTCTGGTGATTGTTCAACCTCTGGAAGCGATCGTTTTAGTTGTGACCGCTCTGGTCCATATGAGCGTCGGGAGACAGGAGGTTACCGTTTTGAATGTTTGAATATTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

228

Amino Acids

24.21

Weight (kDa)

7.52

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	10 - 79	3.3e-20	RNA recognition motif
zf-CCHC	PF00098	104 - 120	5.9e-08	Zinc knuckle
zf-CCHC	PF00098	145 - 159	2.3e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39260 AT4G39260 AT4G39260 AT4G39260
rosa_chinensis	RchiOBHm_Chr1g0378041
rosa_samantha	Rh1AG424700
rosa_wichuraiana	Rw1G037330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	378, 495
AccBSI	CCGCTC	1 cut(s)	624
AciI	CCGC	4 cut(s)	384, 501, 562, 622
AclWI	GGATC	2 cut(s)	218, 301
AfaI	GTAC	2 cut(s)	413, 530
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	8 cut(s)	104, 242, 319, 372, 436, 591, 668, 676
AjiI	CACGTC	1 cut(s)	290
AjnI	CCWGG	3 cut(s)	44, 331, 448
AluBI	AGCT	3 cut(s)	77, 97, 248
AluI	AGCT	3 cut(s)	77, 97, 248
Alw26I	GTCTC	1 cut(s)	641
AlwI	GGATC	2 cut(s)	218, 301
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	498
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	629
AsuHPI	GGTGA	2 cut(s)	524, 593
AvaII	GGWCC	1 cut(s)	629
BaeI	ACNNNNGTAYC	1 cut(s)	35
BauI	CACGAG	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	2 cut(s)	215, 293
BciT130I	CCWGG	3 cut(s)	46, 333, 450
BcoDI	GTCTC	1 cut(s)	641
BfaI	CTAG	2 cut(s)	357, 474
BfoI	RGCGCY	1 cut(s)	139
BfuAI	ACCTGC	2 cut(s)	378, 495
BisI	GCNGC	4 cut(s)	385, 499, 502, 562
BlsI	GCNGC	4 cut(s)	386, 500, 503, 563
Bme1390I	CCNGG	3 cut(s)	46, 333, 450
Bme18I	GGWCC	1 cut(s)	629
BmgBI	CACGTC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	629
BmrFI	CCNGG	3 cut(s)	46, 333, 450
Bsa29I	ATCGAT	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	108, 259
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse3DI	GCAATG	1 cut(s)	186
BseBI	CCWGG	3 cut(s)	46, 333, 450
BseCI	ATCGAT	1 cut(s)	213
BseDI	CCNNGG	2 cut(s)	108, 259
BseGI	GGATG	3 cut(s)	250, 409, 526
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	186
BseRI	GAGGAG	5 cut(s)	212, 390, 552, 555, 558
BseXI	GCAGC	1 cut(s)	510
Bsh1285I	CGRYCG	1 cut(s)	607
BshFI	GGCC	1 cut(s)	39
BshVI	ATCGAT	1 cut(s)	213
BsiEI	CGRYCG	1 cut(s)	607
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	641
BsnI	GGCC	1 cut(s)	39
Bsp143I	GATC	3 cut(s)	210, 293, 604
BspACI	CCGC	4 cut(s)	384, 501, 562, 622
BspANI	GGCC	1 cut(s)	39
BspDI	ATCGAT	1 cut(s)	213
BspMI	ACCTGC	2 cut(s)	378, 495
BspPI	GGATC	2 cut(s)	218, 301
BsrBI	CCGCTC	1 cut(s)	624
BsrDI	GCAATG	1 cut(s)	186
BssECI	CCNNGG	2 cut(s)	108, 259
BssMI	GATC	3 cut(s)	210, 293, 604
BssSI	CACGAG	1 cut(s)	141
BssT1I	CCWWGG	2 cut(s)	108, 259
Bst2BI	CACGAG	1 cut(s)	141
Bst2UI	CCWGG	3 cut(s)	46, 333, 450
Bst4CI	ACNGT	4 cut(s)	238, 416, 533, 662
Bst6I	CTCTTC	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	329, 446
BstEII	GGTNACC	1 cut(s)	656
BstF5I	GGATG	3 cut(s)	250, 409, 526
BstH2I	RGCGCY	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	3 cut(s)	213, 296, 607
BstMAI	GTCTC	1 cut(s)	641
BstMBI	GATC	3 cut(s)	210, 293, 604
BstMCI	CGRYCG	1 cut(s)	607
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNI	CCWGG	3 cut(s)	46, 333, 450
BstPI	GGTNACC	1 cut(s)	656
BstSCI	CCNGG	3 cut(s)	44, 331, 448
BstV1I	GCAGC	1 cut(s)	510
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
Bsu15I	ATCGAT	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	39
BsuTUI	ATCGAT	1 cut(s)	213
BtrI	CACGTC	1 cut(s)	290
BtsCI	GGATG	3 cut(s)	250, 409, 526
BtsIMutI	CAGTG	2 cut(s)	421, 538
BveI	ACCTGC	2 cut(s)	378, 495
Cac8I	GCNNGC	2 cut(s)	329, 446
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	629
ClaI	ATCGAT	1 cut(s)	213
CseI	GACGC	1 cut(s)	629
Csp6I	GTAC	2 cut(s)	412, 529
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	8 cut(s)	39, 77, 97, 107, 248, 331, 448, 561
CviKI_1	RGCY	8 cut(s)	39, 77, 97, 107, 248, 331, 448, 561
CviQI	GTAC	2 cut(s)	412, 529
DpnI	GATC	3 cut(s)	212, 295, 606
DpnII	GATC	3 cut(s)	210, 293, 604
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	2 cut(s)	108, 259
Eco47I	GGWCC	1 cut(s)	629
Eco91I	GGTNACC	1 cut(s)	656
EcoO65I	GGTNACC	1 cut(s)	656
EcoRII	CCWGG	3 cut(s)	44, 331, 448
EcoT14I	CCWWGG	2 cut(s)	108, 259
ErhI	CCWWGG	2 cut(s)	108, 259
FaeI	CATG	1 cut(s)	92
FaiI	YATR	9 cut(s)	90, 150, 233, 279, 393, 510, 634, 636, 685
FatI	CATG	1 cut(s)	88
FauNDI	CATATG	1 cut(s)	634
Fnu4HI	GCNGC	4 cut(s)	385, 499, 502, 562
FokI	GGATG	3 cut(s)	237, 416, 533
Fsp4HI	GCNGC	4 cut(s)	385, 499, 502, 562
FspBI	CTAG	2 cut(s)	357, 474
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	4 cut(s)	385, 499, 502, 562
HaeII	RGCGCY	1 cut(s)	139
HaeIII	GGCC	1 cut(s)	39
HgaI	GACGC	1 cut(s)	629
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	1 cut(s)	92
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	2 cut(s)	75, 95
HinfI	GANTC	1 cut(s)	64
HphI	GGTGA	2 cut(s)	524, 593
Hpy166II	GTNNAC	2 cut(s)	51, 287
Hpy188I	TCNGA	3 cut(s)	7, 58, 298
Hpy188III	TCNNGA	4 cut(s)	372, 489, 597, 644
Hpy8I	GTNNAC	2 cut(s)	51, 287
Hpy99I	CGWCG	1 cut(s)	645
HpyCH4III	ACNGT	4 cut(s)	238, 416, 533, 662
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	3 cut(s)	344, 461, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpySE526I	ACGT	1 cut(s)	289
Hsp92II	CATG	1 cut(s)	92
HspAI	GCGC	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	210, 293, 604
Lsp1109I	GCAGC	1 cut(s)	510
MaeI	CTAG	2 cut(s)	357, 474
MaeII	ACGT	1 cut(s)	289
MaeIII	GTNAC	2 cut(s)	617, 656
MalI	GATC	3 cut(s)	212, 295, 606
MbiI	CCGCTC	1 cut(s)	624
MboI	GATC	3 cut(s)	210, 293, 604
MboII	GAAGA	3 cut(s)	20, 197, 437
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	1 cut(s)	293
MluCI	AATT	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	73
MspA1I	CMGCKG	1 cut(s)	501
MspR9I	CCNGG	3 cut(s)	46, 333, 450
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	3 cut(s)	46, 333, 450
MwoI	GCNNNNNNNGC	1 cut(s)	94
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	3 cut(s)	210, 293, 604
NlaIII	CATG	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	617
PkrI	GCNGC	4 cut(s)	386, 500, 503, 563
Ple19I	CGATCG	1 cut(s)	607
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
Psp6I	CCWGG	3 cut(s)	44, 331, 448
PspEI	GGTNACC	1 cut(s)	656
PspGI	CCWGG	3 cut(s)	44, 331, 448
PspPI	GGNCC	1 cut(s)	629
PsuI	RGATCY	1 cut(s)	293
PvuI	CGATCG	1 cut(s)	607
RsaI	GTAC	2 cut(s)	413, 530
RsaNI	GTAC	2 cut(s)	412, 529
SatI	GCNGC	4 cut(s)	385, 499, 502, 562
Sau3AI	GATC	3 cut(s)	210, 293, 604
Sau96I	GGNCC	1 cut(s)	629
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	3 cut(s)	46, 333, 450
SinI	GGWCC	1 cut(s)	629
Sse9I	AATT	1 cut(s)	192
SsiI	CCGC	4 cut(s)	384, 501, 562, 622
SspI	AATATT	1 cut(s)	679
SspMI	CTAG	2 cut(s)	357, 474
StyD4I	CCNGG	3 cut(s)	44, 331, 448
StyI	CCWWGG	2 cut(s)	108, 259
TaaI	ACNGT	4 cut(s)	238, 416, 533, 662
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	2 cut(s)	213, 226
TasI	AATT	1 cut(s)	192
TatI	WGTACW	2 cut(s)	411, 528
TauI	GCSGC	3 cut(s)	387, 504, 564
TscAI	CASTG	2 cut(s)	421, 538
TseFI	GTSAC	1 cut(s)	617
TseI	GCWGC	1 cut(s)	498
Tsp45I	GTSAC	1 cut(s)	617
TspDTI	ATGAA	1 cut(s)	218
TspRI	CASTG	2 cut(s)	421, 538
VpaK11BI	GGWCC	1 cut(s)	629
XspI	CTAG	2 cut(s)	357, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.