Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017561

Physical Location & Seq

Genomic Coordinates Reverse (-)

1507418 .. 1508927

Gene Structure 1510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGATATGAGACGTGCTTCGATGTGTATGATGTTAATTTGCGTCTCCTTGGTTCTCCTTTCGGGTTTTGGCCAGTTTGTGATCTGCAGTGAAGAAAAAGGAACGTACAACGACAACGTCGTAAAGATGAAGCTTGGTGGATTTAGCGATTCCAAGAACGATTGGAACGGTGGAAAAGAGATCGATGATATTGCACTCTTCGCTGTTCAAGAGCACAACAGACGAGAGAATGCTGTTCTTGAGCTTGCTAGAGTATTGAAGGCAACAGAGCAGGTGGTTGCTGGCAAGCTATACCGTCTTACTCTTGAAGTTATTGAAGCTGGTGAGAAAAAGATTTATGAAGCTAAAGTTTGGGTGAAGCCATGGATGAACTTTAAGCAGCTTCAGGAGTTCAAGAATATTATCCCCTCCTTCACTATCTCTGACCTTGGCTTCAAACCAGATGGCAATGGATTTGACTGGAGATCAGTATCAACAAATAACCCTGAAGTCCAAGAAGCAGCGAAGCACGCCATGAAATCACTTCAACAGAAATCAAACTCACTGTTCCCCTATAAACTCATAGATATAATCCTAGCCAGGGCAAAGGTGGTTGAAGAGCGTGTGAAATTCGAACTGCTGCTGAAGCTAGAGAGGGGCAACAAACTGGAGAAGTTCATGGTAGAAGTGATGAAGGATCAAACCGGCAAGTATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

232

Amino Acids

26.58

Weight (kDa)

8.61

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	59 - 133	1.4e-20	Aspartic acid proteinase inhibitor
Cystatin	PF00031	59 - 133	7.6e-14	Cystatin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05110
rosa_chinensis	RchiOBHm_Chr3g0494971
rosa_laevigata	RLG00000022659
rosa_multiflora	Rmu_sc0003482.1_g000015
rosa_roxburghii	Rroxscaffold_6G00390870
rosa_rugosa	Rorug03G0268500 Rorug03G0268600
rosa_samantha	Rh3AG318100 Rh3BG352900 Rh3CG349800 Rh3DG352200
rosa_wichuraiana	Rw3G027710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	262
Acc36I	ACCTGC	1 cut(s)	262
AclWI	GGATC	1 cut(s)	684
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	608
AcuI	CTGAAG	3 cut(s)	368, 507, 644
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	580
AgsI	TTSAA	8 cut(s)	209, 259, 308, 317, 394, 436, 527, 596
AjiI	CACGTC	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	578
AluBI	AGCT	7 cut(s)	133, 244, 289, 320, 344, 382, 628
AluI	AGCT	7 cut(s)	133, 244, 289, 320, 344, 382, 628
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	2 cut(s)	4, 49
AlwI	GGATC	1 cut(s)	684
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	3 cut(s)	379, 500, 619
ApoI	RAATTY	1 cut(s)	608
AsuHPI	GGTGA	2 cut(s)	335, 367
AsuII	TTCGAA	1 cut(s)	612
BalI	TGGCCA	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	3 cut(s)	391, 512, 606
BccI	CCATC	1 cut(s)	437
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	1 cut(s)	580
BcoDI	GTCTC	2 cut(s)	4, 49
BfaI	CTAG	3 cut(s)	249, 575, 629
BfmI	CTRYAG	1 cut(s)	85
BfuAI	ACCTGC	1 cut(s)	262
BisI	GCNGC	3 cut(s)	380, 501, 620
BlsI	GCNGC	3 cut(s)	381, 502, 621
Bme1390I	CCNGG	1 cut(s)	580
BmgBI	CACGTC	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	580
BpmI	CTGGAG	2 cut(s)	481, 668
Bpu14I	TTCGAA	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	260
Bsa29I	ATCGAT	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	469
BsaJI	CCNNGG	4 cut(s)	48, 362, 427, 579
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse118I	RCCGGY	1 cut(s)	683
Bse1I	ACTGG	3 cut(s)	73, 464, 651
Bse3DI	GCAATG	1 cut(s)	454
Bse8I	GATNNNNATC	1 cut(s)	469
BseBI	CCWGG	1 cut(s)	580
BseCI	ATCGAT	1 cut(s)	183
BseDI	CCNNGG	4 cut(s)	48, 362, 427, 579
BseGI	GGATG	1 cut(s)	372
BseJI	GATNNNNATC	1 cut(s)	469
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMI	GCAATG	1 cut(s)	454
BseNI	ACTGG	3 cut(s)	73, 464, 651
BseXI	GCAGC	3 cut(s)	391, 512, 606
BshFI	GGCC	1 cut(s)	72
BshVI	ATCGAT	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	684
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmAI	GTCTC	2 cut(s)	4, 49
BsmBI	CGTCTC	2 cut(s)	4, 49
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	72
Bsp119I	TTCGAA	1 cut(s)	612
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	4 cut(s)	81, 180, 464, 676
Bsp19I	CCATGG	1 cut(s)	362
BspANI	GGCC	1 cut(s)	72
BspDI	ATCGAT	1 cut(s)	183
BspMAI	CTGCAG	1 cut(s)	89
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	1 cut(s)	684
BspQI	GCTCTTC	1 cut(s)	591
BspT104I	TTCGAA	1 cut(s)	612
BsrDI	GCAATG	1 cut(s)	454
BsrFI	RCCGGY	1 cut(s)	683
BsrI	ACTGG	3 cut(s)	73, 464, 651
BssAI	RCCGGY	1 cut(s)	683
BssECI	CCNNGG	4 cut(s)	48, 362, 427, 579
BssMI	GATC	4 cut(s)	81, 180, 464, 676
BssT1I	CCWWGG	3 cut(s)	48, 362, 427
Bst2UI	CCWGG	1 cut(s)	580
Bst4CI	ACNGT	3 cut(s)	170, 296, 546
Bst6I	CTCTTC	2 cut(s)	203, 591
BstBI	TTCGAA	1 cut(s)	612
BstC8I	GCNNGC	4 cut(s)	246, 283, 287, 510
BstDSI	CCRYGG	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	372
BstKTI	GATC	4 cut(s)	84, 183, 467, 679
BstMAI	GTCTC	2 cut(s)	4, 49
BstMBI	GATC	4 cut(s)	81, 180, 464, 676
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 509, 625
BstNI	CCWGG	1 cut(s)	580
BstSCI	CCNGG	1 cut(s)	578
BstSFI	CTRYAG	1 cut(s)	85
BstV1I	GCAGC	3 cut(s)	391, 512, 606
Bsu15I	ATCGAT	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	72
BsuTUI	ATCGAT	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	362
BtrI	CACGTC	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	372
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	2 cut(s)	94, 542
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	4 cut(s)	246, 283, 287, 510
Cfr10I	RCCGGY	1 cut(s)	683
ClaI	ATCGAT	1 cut(s)	183
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	3 cut(s)	363, 514, 658
CviQI	GTAC	1 cut(s)	106
DpnI	GATC	4 cut(s)	83, 182, 466, 678
DpnII	GATC	4 cut(s)	81, 180, 464, 676
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	2 cut(s)	203, 591
EarI	CTCTTC	2 cut(s)	203, 591
Eco130I	CCWWGG	3 cut(s)	48, 362, 427
Eco57I	CTGAAG	3 cut(s)	368, 507, 644
EcoRII	CCWGG	1 cut(s)	578
EcoT14I	CCWWGG	3 cut(s)	48, 362, 427
ErhI	CCWWGG	3 cut(s)	48, 362, 427
Esp3I	CGTCTC	2 cut(s)	4, 49
FaeI	CATG	3 cut(s)	366, 517, 661
FatI	CATG	3 cut(s)	362, 513, 657
Fnu4HI	GCNGC	3 cut(s)	380, 501, 620
FokI	GGATG	1 cut(s)	379
Fsp4HI	GCNGC	3 cut(s)	380, 501, 620
FspBI	CTAG	3 cut(s)	249, 575, 629
GluI	GCNGC	3 cut(s)	380, 501, 620
GsuI	CTGGAG	2 cut(s)	481, 668
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	1 cut(s)	684
HgaI	GACGC	1 cut(s)	31
Hin1II	CATG	3 cut(s)	366, 517, 661
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	684
HphI	GGTGA	2 cut(s)	335, 367
Hpy188I	TCNGA	1 cut(s)	424
Hpy188III	TCNNGA	5 cut(s)	209, 239, 305, 386, 394
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	3 cut(s)	253, 421, 667
HpyCH4III	ACNGT	3 cut(s)	170, 296, 546
HpyCH4IV	ACGT	3 cut(s)	13, 104, 117
HpyCH4V	TGCA	2 cut(s)	87, 194
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 509, 625
HpySE526I	ACGT	3 cut(s)	13, 104, 117
Hsp92II	CATG	3 cut(s)	366, 517, 661
Kzo9I	GATC	4 cut(s)	81, 180, 464, 676
LguI	GCTCTTC	1 cut(s)	591
Lsp1109I	GCAGC	3 cut(s)	391, 512, 606
MaeI	CTAG	3 cut(s)	249, 575, 629
MaeII	ACGT	3 cut(s)	13, 104, 117
MalI	GATC	4 cut(s)	83, 182, 466, 678
MboI	GATC	4 cut(s)	81, 180, 464, 676
MboII	GAAGA	3 cut(s)	104, 190, 608
MhlI	GDGCHC	1 cut(s)	216
MlsI	TGGCCA	1 cut(s)	72
MluCI	AATT	2 cut(s)	36, 608
MluNI	TGGCCA	1 cut(s)	72
MnlI	CCTC	2 cut(s)	418, 627
Mox20I	TGGCCA	1 cut(s)	72
MscI	TGGCCA	1 cut(s)	72
MseI	TTAA	2 cut(s)	35, 375
Msp20I	TGGCCA	1 cut(s)	72
MspI	CCGG	1 cut(s)	684
MspR9I	CCNGG	1 cut(s)	580
Mva1269I	GAATGC	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	580
MwoI	GCNNNNNNNGC	3 cut(s)	200, 509, 625
NcoI	CCATGG	1 cut(s)	362
NdeII	GATC	4 cut(s)	81, 180, 464, 676
NlaIII	CATG	3 cut(s)	366, 517, 661
NspV	TTCGAA	1 cut(s)	612
PaqCI	CACCTGC	1 cut(s)	262
PciSI	GCTCTTC	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PctI	GAATGC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	149
PflFI	GACNNNGTC	1 cut(s)	116
PkrI	GCNGC	3 cut(s)	381, 502, 621
Psp6I	CCWGG	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	578
PstI	CTGCAG	1 cut(s)	89
PsyI	GACNNNGTC	1 cut(s)	116
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SapI	GCTCTTC	1 cut(s)	591
SaqAI	TTAA	2 cut(s)	35, 375
SatI	GCNGC	3 cut(s)	380, 501, 620
Sau3AI	GATC	4 cut(s)	81, 180, 464, 676
ScrFI	CCNGG	1 cut(s)	580
SduI	GDGCHC	1 cut(s)	216
SfcI	CTRYAG	1 cut(s)	85
SfuI	TTCGAA	1 cut(s)	612
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	2 cut(s)	36, 608
SspI	AATATT	1 cut(s)	400
SspMI	CTAG	3 cut(s)	249, 575, 629
StyD4I	CCNGG	1 cut(s)	578
StyI	CCWWGG	3 cut(s)	48, 362, 427
TaaI	ACNGT	3 cut(s)	170, 296, 546
TaiI	ACGT	3 cut(s)	16, 107, 120
TaqI	TCGA	3 cut(s)	20, 183, 612
TasI	AATT	2 cut(s)	36, 608
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	2 cut(s)	35, 375
Tru9I	TTAA	2 cut(s)	35, 375
TscAI	CASTG	2 cut(s)	94, 549
TseI	GCWGC	3 cut(s)	379, 500, 619
TspDTI	ATGAA	6 cut(s)	143, 354, 383, 530, 646, 686
TspRI	CASTG	2 cut(s)	94, 549
Tth111I	GACNNNGTC	1 cut(s)	116
XapI	RAATTY	1 cut(s)	608
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XspI	CTAG	3 cut(s)	249, 575, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.