Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0017561

Physical Location & Seq

Genomic Coordinates Forward (+)

26385528 .. 26386456

Gene Structure 929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0268600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGAGTTCCCTCTTCAATATCTCAGTTCTTCTCCATCCACCATACTCGGCTTTTTATTGTTTATTCTCTCTTTGTTGCTATGGATAACAAAAATTTCCAACAATAATGCAGCTAGAAAGAGGGGAGCACCGGAAGCAGCCGGTGCATGGCCATTAGTTGGTCACCTTCCCCTCTTAGGCGGCTCACTTCCGCCGCATATAACCTTGGGTAACATGGCTGACAAGTATGGACCGCTCTTCACAATCAAACTCGACGTGCACCGATCTCTTATTGTGAGCAGTTGGGACATGGCCAAAGAGTGTCTAACCACCAACGACAGAGTCTTTGCTAATCGCCTGAAGCTATTAGTCTCAGAGGTTATGGGATACAACTACGCCATGATTGGGTTCAGTCCCTATGGTCCTTACTGGCGCCAAATACGCAAGGTAGCCACCCTAGAGCTCCTCTCAAACCAACGCTTGGAGAACCTCAAGCACGTTCGTGAATCCGAGGTGAGGGCTTGTACCAAGAACATTTACGATTTGTGGAGGCAAAACAAAAGCTCAGATCATGTGTTGGTGGACATGAAGAGGTGGTTCGGAGACGTAACGATGAACACTATGTTTAGGATGGTTATAGGGAAGTGGTTCCTACTTGAGGCTAGCTTGGAGCGTGAGAAGGAAGAGAACGAATGGTTTCGAAAGGCGTTGAGGGAGTTTTTCAGATTGGCCGGTGAGTTTGTGATGGCGGATGCAGTGCCTTTCCTTAGGTGGTTAGATTTGGGTGGACATGAGAAGGCAATGAAGAAGACGGCAAAGGAACTAGATCATGTTCTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

273

Amino Acids

31.51

Weight (kDa)

9.24

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	48 - 271	3.3e-20	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05110
rosa_chinensis	RchiOBHm_Chr3g0494971
rosa_laevigata	RLG00000022659
rosa_multiflora	Rmu_sc0003482.1_g000015
rosa_roxburghii	Rroxscaffold_6G00390870
rosa_rugosa	Rorug03G0268500 Rorug03G0268600
rosa_samantha	Rh3AG318100 Rh3BG352900 Rh3CG349800 Rh3DG352200
rosa_wichuraiana	Rw3G027710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	411
AccB7I	CCANNNNNTGG	2 cut(s)	158, 460
AccBSI	CCGCTC	1 cut(s)	235
AciI	CCGC	5 cut(s)	180, 191, 194, 233, 728
AcoI	YGGCCR	3 cut(s)	149, 291, 708
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	359
AcyI	GRCGYC	1 cut(s)	412
AfaI	GTAC	1 cut(s)	505
AfiI	CCNNNNNNNGG	7 cut(s)	147, 158, 176, 384, 460, 495, 637
AgsI	TTSAA	1 cut(s)	17
AjiI	CACGTC	1 cut(s)	256
AleI	CACNNNNGTG	1 cut(s)	480
AluBI	AGCT	5 cut(s)	113, 343, 442, 543, 645
AluI	AGCT	5 cut(s)	113, 343, 442, 543, 645
Alw21I	GWGCWC	3 cut(s)	130, 261, 444
Alw26I	GTCTC	2 cut(s)	355, 576
Alw44I	GTGCAC	1 cut(s)	257
AoxI	GGCC	3 cut(s)	149, 291, 708
ApaLI	GTGCAC	1 cut(s)	257
ApeKI	GCWGC	2 cut(s)	110, 137
ApoI	RAATTY	1 cut(s)	93
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
Asp700I	GAANNNNTTC	2 cut(s)	626, 675
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	2 cut(s)	230, 401
AsuHPI	GGTGA	3 cut(s)	155, 505, 725
AsuII	TTCGAA	1 cut(s)	679
AsuNHI	GCTAGC	1 cut(s)	641
AvaII	GGWCC	2 cut(s)	230, 401
AxyI	CCTNAGG	1 cut(s)	746
BaeGI	GKGCMC	1 cut(s)	261
BalI	TGGCCA	2 cut(s)	151, 293
BanI	GGYRCC	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	444
BbsI	GAAGAC	1 cut(s)	794
Bbv12I	GWGCWC	3 cut(s)	130, 261, 444
BbvI	GCAGC	2 cut(s)	122, 149
BccI	CCATC	3 cut(s)	43, 604, 718
BceAI	ACGGC	1 cut(s)	807
BciVI	GTATCC	1 cut(s)	359
BcoDI	GTCTC	2 cut(s)	355, 576
BfaI	CTAG	5 cut(s)	114, 437, 642, 803, 815
BfoI	RGCGCY	1 cut(s)	415
BfuI	GTATCC	1 cut(s)	359
BisI	GCNGC	4 cut(s)	111, 138, 181, 194
BlsI	GCNGC	4 cut(s)	112, 139, 182, 195
Bme18I	GGWCC	2 cut(s)	230, 401
BmgBI	CACGTC	1 cut(s)	256
BmgT120I	GGNCC	2 cut(s)	230, 401
BmiI	GGNNCC	2 cut(s)	413, 629
BmsI	GCATC	1 cut(s)	721
BmtI	GCTAGC	1 cut(s)	645
BpiI	GAAGAC	1 cut(s)	794
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
Bpu14I	TTCGAA	1 cut(s)	679
BpuEI	CTTGAG	2 cut(s)	455, 656
BsaHI	GRCGYC	1 cut(s)	412
BsaJI	CCNNGG	2 cut(s)	204, 489
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	7 cut(s)	147, 158, 176, 384, 460, 495, 637
Bse118I	RCCGGY	2 cut(s)	140, 710
Bse1I	ACTGG	1 cut(s)	413
Bse21I	CCTNAGG	1 cut(s)	746
Bse3DI	GCAATG	1 cut(s)	786
BseDI	CCNNGG	2 cut(s)	204, 489
BseGI	GGATG	3 cut(s)	35, 615, 736
BseLI	CCNNNNNNNGG	7 cut(s)	147, 158, 176, 384, 460, 495, 637
BseMI	GCAATG	1 cut(s)	786
BseMII	CTCAG	3 cut(s)	37, 366, 558
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	1 cut(s)	434
BseSI	GKGCMC	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	122, 149
BshFI	GGCC	3 cut(s)	151, 293, 710
BshNI	GGYRCC	1 cut(s)	411
BsiHKAI	GWGCWC	3 cut(s)	130, 261, 444
BsiSI	CCGG	3 cut(s)	131, 141, 711
BslFI	GGGAC	2 cut(s)	299, 378
BslI	CCNNNNNNNGG	7 cut(s)	147, 158, 176, 384, 460, 495, 637
BsmAI	GTCTC	2 cut(s)	355, 576
BsmBI	CGTCTC	1 cut(s)	576
BsmFI	GGGAC	2 cut(s)	299, 378
BsnI	GGCC	3 cut(s)	151, 293, 710
Bsp119I	TTCGAA	1 cut(s)	679
Bsp1286I	GDGCHC	3 cut(s)	130, 261, 444
Bsp143I	GATC	3 cut(s)	263, 547, 805
BspACI	CCGC	5 cut(s)	180, 191, 194, 233, 728
BspANI	GGCC	3 cut(s)	151, 293, 710
BspCNI	CTCAG	3 cut(s)	36, 365, 557
BspLI	GGNNCC	2 cut(s)	413, 629
BspOI	GCTAGC	1 cut(s)	645
BspQI	GCTCTTC	1 cut(s)	242
BspT104I	TTCGAA	1 cut(s)	679
BspT107I	GGYRCC	1 cut(s)	411
BsrBI	CCGCTC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	786
BsrFI	RCCGGY	2 cut(s)	140, 710
BsrI	ACTGG	1 cut(s)	413
BssAI	RCCGGY	2 cut(s)	140, 710
BssECI	CCNNGG	2 cut(s)	204, 489
BssMI	GATC	3 cut(s)	263, 547, 805
BssNI	GRCGYC	1 cut(s)	412
BssT1I	CCWWGG	1 cut(s)	204
Bst6I	CTCTTC	4 cut(s)	18, 242, 563, 657
BstACI	GRCGYC	1 cut(s)	412
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstBI	TTCGAA	1 cut(s)	679
BstC8I	GCNNGC	1 cut(s)	643
BstDEI	CTNAG	5 cut(s)	23, 175, 352, 544, 746
BstEII	GGTNACC	1 cut(s)	161
BstENI	CCTNNNNNAGG	1 cut(s)	635
BstF5I	GGATG	3 cut(s)	35, 615, 736
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	3 cut(s)	266, 550, 808
BstMAI	GTCTC	2 cut(s)	355, 576
BstMBI	GATC	3 cut(s)	263, 547, 805
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 143, 420
BstPI	GGTNACC	1 cut(s)	161
BstSLI	GKGCMC	1 cut(s)	261
BstV1I	GCAGC	2 cut(s)	122, 149
BstV2I	GAAGAC	1 cut(s)	794
Bsu36I	CCTNAGG	1 cut(s)	746
BsuI	GTATCC	1 cut(s)	359
BsuRI	GGCC	3 cut(s)	151, 293, 710
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	3 cut(s)	35, 615, 736
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	1 cut(s)	741
Cac8I	GCNNGC	1 cut(s)	643
CfoI	GCGC	1 cut(s)	414
Cfr10I	RCCGGY	2 cut(s)	140, 710
Cfr13I	GGNCC	2 cut(s)	230, 401
Csp6I	GTAC	1 cut(s)	504
CviAII	CATG	8 cut(s)	147, 214, 289, 379, 551, 565, 770, 809
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	5 cut(s)	23, 175, 352, 544, 746
DinI	GGCGCC	1 cut(s)	413
DpnI	GATC	3 cut(s)	265, 549, 807
DpnII	GATC	3 cut(s)	263, 547, 805
EaeI	YGGCCR	3 cut(s)	149, 291, 708
Eam1104I	CTCTTC	4 cut(s)	18, 242, 563, 657
EarI	CTCTTC	4 cut(s)	18, 242, 563, 657
EciI	GGCGGA	2 cut(s)	180, 743
Ecl136II	GAGCTC	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	444
Eco47I	GGWCC	2 cut(s)	230, 401
Eco53kI	GAGCTC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	746
Eco91I	GGTNACC	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	442
EcoNI	CCTNNNNNAGG	1 cut(s)	635
EcoO65I	GGTNACC	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	444
EgeI	GGCGCC	1 cut(s)	413
EheI	GGCGCC	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	576
FaeI	CATG	8 cut(s)	150, 217, 292, 382, 554, 568, 773, 812
FaqI	GGGAC	2 cut(s)	299, 378
FatI	CATG	8 cut(s)	146, 213, 288, 378, 550, 564, 769, 808
Fnu4HI	GCNGC	4 cut(s)	111, 138, 181, 194
FokI	GGATG	3 cut(s)	22, 622, 743
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	4 cut(s)	111, 138, 181, 194
FspBI	CTAG	5 cut(s)	114, 437, 642, 803, 815
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	4 cut(s)	111, 138, 181, 194
HaeII	RGCGCY	1 cut(s)	415
HaeIII	GGCC	3 cut(s)	151, 293, 710
HapII	CCGG	3 cut(s)	131, 141, 711
HhaI	GCGC	1 cut(s)	414
Hin1I	GRCGYC	1 cut(s)	412
Hin1II	CATG	8 cut(s)	150, 217, 292, 382, 554, 568, 773, 812
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HinfI	GANTC	2 cut(s)	321, 485
HpaII	CCGG	3 cut(s)	131, 141, 711
HphI	GGTGA	3 cut(s)	155, 505, 725
Hpy166II	GTNNAC	3 cut(s)	259, 562, 767
Hpy188I	TCNGA	5 cut(s)	355, 490, 547, 581, 704
Hpy188III	TCNNGA	2 cut(s)	482, 815
Hpy8I	GTNNAC	3 cut(s)	259, 562, 767
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	3 cut(s)	176, 652, 769
HpyCH4IV	ACGT	3 cut(s)	255, 477, 585
HpyCH4V	TGCA	4 cut(s)	110, 146, 259, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 143, 420
HpyF3I	CTNAG	5 cut(s)	23, 175, 352, 544, 746
HpySE526I	ACGT	3 cut(s)	255, 477, 585
Hsp92I	GRCGYC	1 cut(s)	412
Hsp92II	CATG	8 cut(s)	150, 217, 292, 382, 554, 568, 773, 812
HspAI	GCGC	1 cut(s)	412
KasI	GGCGCC	1 cut(s)	411
Kzo9I	GATC	3 cut(s)	263, 547, 805
LguI	GCTCTTC	1 cut(s)	242
LmnI	GCTCC	3 cut(s)	125, 447, 649
LpnPI	CCDG	5 cut(s)	144, 154, 350, 394, 724
Lsp1109I	GCAGC	2 cut(s)	122, 149
LweI	GCATC	1 cut(s)	721
MaeI	CTAG	5 cut(s)	114, 437, 642, 803, 815
MaeII	ACGT	3 cut(s)	255, 477, 585
MaeIII	GTNAC	3 cut(s)	161, 209, 586
MalI	GATC	3 cut(s)	265, 549, 807
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	3 cut(s)	263, 547, 805
MboII	GAAGA	7 cut(s)	5, 21, 229, 580, 674, 796, 799
MhlI	GDGCHC	3 cut(s)	130, 261, 444
MlsI	TGGCCA	2 cut(s)	151, 293
MluCI	AATT	1 cut(s)	93
MluNI	TGGCCA	2 cut(s)	151, 293
Mly113I	GGCGCC	1 cut(s)	412
MlyI	GAGTC	1 cut(s)	330
MmeI	TCCRAC	1 cut(s)	123
Mox20I	TGGCCA	2 cut(s)	151, 293
MroXI	GAANNNNTTC	2 cut(s)	626, 675
MscI	TGGCCA	2 cut(s)	151, 293
MslI	CAYNNNNRTG	1 cut(s)	480
Msp20I	TGGCCA	2 cut(s)	151, 293
MspI	CCGG	3 cut(s)	131, 141, 711
MwoI	GCNNNNNNNGC	3 cut(s)	134, 143, 420
NarI	GGCGCC	1 cut(s)	412
NdeII	GATC	3 cut(s)	263, 547, 805
NheI	GCTAGC	1 cut(s)	641
NlaIII	CATG	8 cut(s)	150, 217, 292, 382, 554, 568, 773, 812
NlaIV	GGNNCC	2 cut(s)	413, 629
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	161
NspV	TTCGAA	1 cut(s)	679
OliI	CACNNNNGTG	1 cut(s)	480
PciSI	GCTCTTC	1 cut(s)	242
PdmI	GAANNNNTTC	2 cut(s)	626, 675
PfeI	GAWTC	1 cut(s)	485
PflFI	GACNNNGTC	1 cut(s)	320
PflMI	CCANNNNNTGG	2 cut(s)	158, 460
PkrI	GCNGC	4 cut(s)	112, 139, 182, 195
PleI	GAGTC	1 cut(s)	329
PluTI	GGCGCC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	444
PspEI	GGTNACC	1 cut(s)	161
PspN4I	GGNNCC	2 cut(s)	413, 629
PspPI	GGNCC	2 cut(s)	230, 401
PsyI	GACNNNGTC	1 cut(s)	320
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
RseI	CAYNNNNRTG	1 cut(s)	480
SacI	GAGCTC	1 cut(s)	444
SapI	GCTCTTC	1 cut(s)	242
SatI	GCNGC	4 cut(s)	111, 138, 181, 194
Sau3AI	GATC	3 cut(s)	263, 547, 805
Sau96I	GGNCC	2 cut(s)	230, 401
SchI	GAGTC	1 cut(s)	330
SduI	GDGCHC	3 cut(s)	130, 261, 444
SfaNI	GCATC	1 cut(s)	721
SfoI	GGCGCC	1 cut(s)	413
SfuI	TTCGAA	1 cut(s)	679
SinI	GGWCC	2 cut(s)	230, 401
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	2 cut(s)	470, 635
SmoI	CTYRAG	2 cut(s)	470, 635
Sse9I	AATT	1 cut(s)	93
SsiI	CCGC	5 cut(s)	180, 191, 194, 233, 728
SspDI	GGCGCC	1 cut(s)	411
SspMI	CTAG	5 cut(s)	114, 437, 642, 803, 815
SstI	GAGCTC	1 cut(s)	444
StyI	CCWWGG	1 cut(s)	204
TaiI	ACGT	3 cut(s)	258, 480, 588
TaqI	TCGA	2 cut(s)	252, 679
TasI	AATT	1 cut(s)	93
TauI	GCSGC	2 cut(s)	183, 196
TfiI	GAWTC	1 cut(s)	485
TscAI	CASTG	1 cut(s)	741
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	2 cut(s)	110, 137
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	3 cut(s)	581, 608, 797
TspRI	CASTG	1 cut(s)	741
Tth111I	GACNNNGTC	1 cut(s)	320
Van91I	CCANNNNNTGG	2 cut(s)	158, 460
VneI	GTGCAC	1 cut(s)	257
VpaK11BI	GGWCC	2 cut(s)	230, 401
XagI	CCTNNNNNAGG	1 cut(s)	635
XapI	RAATTY	1 cut(s)	93
XbaI	TCTAGA	1 cut(s)	814
XmnI	GAANNNNTTC	2 cut(s)	626, 675
XspI	CTAG	5 cut(s)	114, 437, 642, 803, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.