AT5G07690
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0020879
Physical Location & Seq
Forward (+)
2446669 .. 2448584
1916 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G07690.1

Sequence Viewer

Length: 1011 bp
ATGTCAAGAAAGCCATGTTGTGTGGGAGAAGGACTGAAGAAAGGAGCATGGACTGCCGAAGAAGACAAGAAACTCATCTCTTACATTCATGAACACGGTGAAGGAGGCTGGCGTGACATTCCCCAAAAAGCTGGACTAAAACGATGTGGAAAGAGTTGTAGATTGCGATGGGCTAACTATTTGAAACCTGACATCAAGAGAGGAGAGTTTAGCTATGAGGAGGAACAGATTATCATCATGCTACACGCTTCTCGCGGCAACAAGTGGTCAGTCATAGCGAGACATTTGCCCAAAAGAACAGATAACGAGATTAAGAACTACTGGAACACGCATCTCAAAAAGCTCCTGATCGATAAGGGAATCGATCCCGTGACCCACAAGCCACTTGCCTATGACTCAAACCCGGATGAGCAATCGCAATCGGGTTCCATCTCTCCAAAGTCTCTTCCTCCTTCAAGCTCCAAAAATGTACCGGAGATAACCAGCAGTGACGAGACACCGAAATATGATGCTTCCTTGAGCTCCAAGAAACGTTGTTTTAAGAGATCGAGTTCTACATCAAAACTGTTAAACAAAGTTGCAGCTAGGGCTTCTTCCATGGGAACTATACTAGGCGCCTCCATCGAAGGAACCTTGATCAGCTCTACACCGTTGTCTTCATGTCTAAATGATGACTTTTCTGAAACAAGTCAATTTCAGATGGAAGAATTTGATCCATTCTATCAGTCATCTGAACACATAATTGATCATATGAAAGAAGATATCAGCATCAACAATTCCGAATACGATTTCTCGCAGTTTCTCGAGCAGTTTAGTAACAACGAAGGGGAAGAAGCTGACAATACTGGAGGAGGATATAACCAAGATCTTCTTATGTCTGATGTCTCATCAACAAGCGTTGATGAAGACGAGATGATGCAAAACATAACTGGTTGGTCAAATTATCTCCTTGACCATTCCGATTTCAATTATGACACGAGCCAAGATTACGACGACAAGAACTTCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000162 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002213 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006082 GO:0006109 GO:0006355 GO:0006357 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009267 GO:0009308 GO:0009309 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009759 GO:0009819 GO:0009867 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010104 GO:0010105 GO:0010438 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010675 GO:0014070 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023051 GO:0023052 GO:0023057 GO:0030054 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0031930 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042343 GO:0042401 GO:0042430 GO:0042435 GO:0042493 GO:0042545 GO:0042594 GO:0042742 GO:0042762 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043436 GO:0043455 GO:0043565 GO:0044106 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0045087 GO:0045229 GO:0045893 GO:0045935 GO:0046219 GO:0046394 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0055044 GO:0060255 GO:0062012 GO:0065007 GO:0065009 GO:0070297 GO:0070298 GO:0070727 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071496 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1900376 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1902680 GO:1903506 GO:1903508 GO:1905255 GO:2000070 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

336

Amino Acids

37.97

Weight (kDa)

5.16

Isoelectric Point (pI)

54.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 2.8e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 8.2e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 5.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 113 2.1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07690 AT5G07700 AT5G07700 AT5G61420 AT5G61420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 614
AccII CGCG 1 cut(s) 255
AciI CCGC 1 cut(s) 255
AclI AACGTT 1 cut(s) 532
AclWI GGATC 2 cut(s) 359, 707
AcsI RAATTY 1 cut(s) 707
AcuI CTGAAG 1 cut(s) 56
AcyI GRCGYC 1 cut(s) 615
AfaI GTAC 1 cut(s) 471
AgsI TTSAA 3 cut(s) 184, 456, 967
AluBI AGCT 8 cut(s) 131, 213, 343, 459, 522, 584, 642, 836
AluI AGCT 8 cut(s) 131, 213, 343, 459, 522, 584, 642, 836
Alw21I GWGCWC 1 cut(s) 524
Alw26I GTCTC 4 cut(s) 274, 447, 488, 889
AlwI GGATC 2 cut(s) 359, 707
Ama87I CYCGRG 1 cut(s) 803
ApeKI GCWGC 1 cut(s) 581
ApoI RAATTY 1 cut(s) 707
AspLEI GCGC 1 cut(s) 617
AsuC2I CCSGG 1 cut(s) 404
AsuHPI GGTGA 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 803
BanI GGYRCC 1 cut(s) 614
BanII GRGCYC 1 cut(s) 524
BauI CACGAG 1 cut(s) 976
BbsI GAAGAC 3 cut(s) 69, 648, 912
Bbv12I GWGCWC 1 cut(s) 524
BbvI GCAGC 1 cut(s) 593
BccI CCATC 4 cut(s) 162, 437, 629, 694
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BclI TGATCA 2 cut(s) 636, 745
BcnI CCSGG 1 cut(s) 404
BcoDI GTCTC 4 cut(s) 274, 447, 488, 889
BfaI CTAG 2 cut(s) 585, 611
BfoI RGCGCY 1 cut(s) 618
BglII AGATCT 1 cut(s) 865
BisI GCNGC 2 cut(s) 256, 582
BlsI GCNGC 2 cut(s) 257, 583
Bme1390I CCNGG 1 cut(s) 404
BmeT110I CYCGRG 1 cut(s) 803
BmiI GGNNCC 3 cut(s) 427, 616, 631
BmrFI CCNGG 1 cut(s) 404
BmsI GCATC 4 cut(s) 340, 499, 777, 906
BpiI GAAGAC 3 cut(s) 69, 648, 912
BpmI CTGGAG 1 cut(s) 867
BpuEI CTTGAG 1 cut(s) 538
BpuMI CCSGG 1 cut(s) 404
Bsa29I ATCGAT 2 cut(s) 351, 363
BsaBI GATNNNNATC 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 615
BsaJI CCNNGG 1 cut(s) 597
BsaWI WCCGGW 1 cut(s) 472
Bse1I ACTGG 3 cut(s) 326, 850, 934
Bse8I GATNNNNATC 1 cut(s) 233
BseCI ATCGAT 2 cut(s) 351, 363
BseDI CCNNGG 1 cut(s) 597
BseGI GGATG 1 cut(s) 412
BseJI GATNNNNATC 1 cut(s) 233
BseNI ACTGG 3 cut(s) 326, 850, 934
BseRI GAGGAG 3 cut(s) 216, 233, 864
BseXI GCAGC 1 cut(s) 593
Bsh1236I CGCG 1 cut(s) 255
BshNI GGYRCC 1 cut(s) 614
BshVI ATCGAT 2 cut(s) 351, 363
BsiHKAI GWGCWC 1 cut(s) 524
BsiHKCI CYCGRG 1 cut(s) 803
BsiSI CCGG 2 cut(s) 404, 473
BsmAI GTCTC 4 cut(s) 274, 447, 488, 889
BsoBI CYCGRG 1 cut(s) 803
Bsp1286I GDGCHC 1 cut(s) 524
Bsp143I GATC 7 cut(s) 348, 364, 545, 636, 712, 745, 865
Bsp19I CCATGG 1 cut(s) 597
BspACI CCGC 1 cut(s) 255
BspDI ATCGAT 2 cut(s) 351, 363
BspFNI CGCG 1 cut(s) 255
BspHI TCATGA 1 cut(s) 88
BspLI GGNNCC 3 cut(s) 427, 616, 631
BspPI GGATC 2 cut(s) 359, 707
BspT107I GGYRCC 1 cut(s) 614
BsrI ACTGG 3 cut(s) 326, 850, 934
BssECI CCNNGG 1 cut(s) 597
BssMI GATC 7 cut(s) 348, 364, 545, 636, 712, 745, 865
BssNI GRCGYC 1 cut(s) 615
BssSI CACGAG 1 cut(s) 976
BssT1I CCWWGG 1 cut(s) 597
Bst2BI CACGAG 1 cut(s) 976
Bst4CI ACNGT 3 cut(s) 98, 567, 651
Bst6I CTCTTC 1 cut(s) 450
BstACI GRCGYC 1 cut(s) 615
BstAPI GCANNNNNTGC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 110
BstDSI CCRYGG 1 cut(s) 597
BstF5I GGATG 1 cut(s) 412
BstFNI CGCG 1 cut(s) 255
BstH2I RGCGCY 1 cut(s) 618
BstHHI GCGC 1 cut(s) 617
BstKTI GATC 7 cut(s) 351, 367, 548, 639, 715, 748, 868
BstMAI GTCTC 4 cut(s) 274, 447, 488, 889
BstMBI GATC 7 cut(s) 348, 364, 545, 636, 712, 745, 865
BstMWI GCNNNNNNNGC 2 cut(s) 53, 587
BstSCI CCNGG 1 cut(s) 402
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 593
BstV2I GAAGAC 3 cut(s) 69, 648, 912
BstX2I RGATCY 1 cut(s) 865
BstXI CCANNNNNNTGG 1 cut(s) 131
BstYI RGATCY 1 cut(s) 865
Bsu15I ATCGAT 2 cut(s) 351, 363
BsuTUI ATCGAT 2 cut(s) 351, 363
BtgI CCRYGG 1 cut(s) 597
BtgZI GCGATG 1 cut(s) 181
BtsCI GGATG 1 cut(s) 412
BtsI GCAGTG 1 cut(s) 493
BtsIMutI CAGTG 1 cut(s) 493
Cac8I GCNNGC 1 cut(s) 110
CciI TCATGA 1 cut(s) 88
CfoI GCGC 1 cut(s) 617
ClaI ATCGAT 2 cut(s) 351, 363
Csp6I GTAC 1 cut(s) 470
CviAII CATG 6 cut(s) 15, 48, 89, 238, 598, 660
CviQI GTAC 1 cut(s) 470
DinI GGCGCC 1 cut(s) 616
DpnI GATC 7 cut(s) 350, 366, 547, 638, 714, 747, 867
DpnII GATC 7 cut(s) 348, 364, 545, 636, 712, 745, 865
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
Ecl136II GAGCTC 1 cut(s) 522
Eco130I CCWWGG 1 cut(s) 597
Eco24I GRGCYC 1 cut(s) 524
Eco32I GATATC 1 cut(s) 763
Eco53kI GAGCTC 1 cut(s) 522
Eco57I CTGAAG 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 803
EcoICRI GAGCTC 1 cut(s) 522
EcoRV GATATC 1 cut(s) 763
EcoT14I CCWWGG 1 cut(s) 597
EcoT38I GRGCYC 1 cut(s) 524
EgeI GGCGCC 1 cut(s) 616
EheI GGCGCC 1 cut(s) 616
ErhI CCWWGG 1 cut(s) 597
FaeI CATG 6 cut(s) 18, 51, 92, 241, 601, 663
FalI AAGNNNNNCTT 2 cut(s) 855, 887
FatI CATG 6 cut(s) 14, 47, 88, 237, 597, 659
FauNDI CATATG 2 cut(s) 750, 1007
FbaI TGATCA 2 cut(s) 636, 745
Fnu4HI GCNGC 2 cut(s) 256, 582
FokI GGATG 1 cut(s) 419
FriOI GRGCYC 1 cut(s) 524
Fsp4HI GCNGC 2 cut(s) 256, 582
FspBI CTAG 2 cut(s) 585, 611
GlaI GCGC 1 cut(s) 616
GluI GCNGC 2 cut(s) 256, 582
GsuI CTGGAG 1 cut(s) 867
HaeII RGCGCY 1 cut(s) 618
HapII CCGG 2 cut(s) 404, 473
HhaI GCGC 1 cut(s) 617
Hin1I GRCGYC 1 cut(s) 615
Hin1II CATG 6 cut(s) 18, 51, 92, 241, 601, 663
Hin6I GCGC 1 cut(s) 615
HinP1I GCGC 1 cut(s) 615
HinfI GANTC 2 cut(s) 360, 395
HpaII CCGG 2 cut(s) 404, 473
HphI GGTGA 1 cut(s) 110
Hpy188I TCNGA 6 cut(s) 682, 699, 733, 781, 880, 961
Hpy188III TCNNGA 5 cut(s) 6, 89, 196, 346, 803
Hpy99I CGWCG 1 cut(s) 995
HpyAV CCTTC 5 cut(s) 23, 95, 462, 620, 818
HpyCH4III ACNGT 3 cut(s) 98, 567, 651
HpyCH4IV ACGT 1 cut(s) 532
HpyCH4V TGCA 2 cut(s) 581, 919
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 587
HpySE526I ACGT 1 cut(s) 532
Hsp92I GRCGYC 1 cut(s) 615
Hsp92II CATG 6 cut(s) 18, 51, 92, 241, 601, 663
HspAI GCGC 1 cut(s) 615
KasI GGCGCC 1 cut(s) 614
Ksp22I TGATCA 2 cut(s) 636, 745
Kzo9I GATC 7 cut(s) 348, 364, 545, 636, 712, 745, 865
LmnI GCTCC 4 cut(s) 44, 348, 464, 527
Lsp1109I GCAGC 1 cut(s) 593
LweI GCATC 4 cut(s) 340, 499, 777, 906
MaeI CTAG 2 cut(s) 585, 611
MaeII ACGT 1 cut(s) 532
MaeIII GTNAC 4 cut(s) 113, 370, 488, 815
MalI GATC 7 cut(s) 350, 366, 547, 638, 714, 747, 867
MboI GATC 7 cut(s) 348, 364, 545, 636, 712, 745, 865
MflI RGATCY 1 cut(s) 865
MhlI GDGCHC 1 cut(s) 524
MluCI AATT 6 cut(s) 692, 707, 741, 775, 940, 967
Mly113I GGCGCC 1 cut(s) 615
MlyI GAGTC 1 cut(s) 389
MnlI CCTC 8 cut(s) 98, 194, 211, 214, 459, 628, 842, 845
MseI TTAA 3 cut(s) 312, 540, 569
MspI CCGG 2 cut(s) 404, 473
MspR9I CCNGG 1 cut(s) 404
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 53, 587
NarI GGCGCC 1 cut(s) 615
NciI CCSGG 1 cut(s) 404
NcoI CCATGG 1 cut(s) 597
NdeI CATATG 2 cut(s) 750, 1007
NdeII GATC 7 cut(s) 348, 364, 545, 636, 712, 745, 865
NlaIII CATG 6 cut(s) 18, 51, 92, 241, 601, 663
NlaIV GGNNCC 3 cut(s) 427, 616, 631
NmuCI GTSAC 3 cut(s) 113, 370, 488
PaeR7I CTCGAG 1 cut(s) 803
PagI TCATGA 1 cut(s) 88
PfeI GAWTC 1 cut(s) 360
PkrI GCNGC 2 cut(s) 257, 583
PleI GAGTC 1 cut(s) 389
PluTI GGCGCC 1 cut(s) 618
PpsI GAGTC 1 cut(s) 389
Psp124BI GAGCTC 1 cut(s) 524
Psp1406I AACGTT 1 cut(s) 532
PspN4I GGNNCC 3 cut(s) 427, 616, 631
PsuI RGATCY 1 cut(s) 865
RsaI GTAC 1 cut(s) 471
RsaNI GTAC 1 cut(s) 470
SacI GAGCTC 1 cut(s) 524
SaqAI TTAA 3 cut(s) 312, 540, 569
SatI GCNGC 2 cut(s) 256, 582
Sau3AI GATC 7 cut(s) 348, 364, 545, 636, 712, 745, 865
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 404
SduI GDGCHC 1 cut(s) 524
SfaNI GCATC 4 cut(s) 340, 499, 777, 906
SfoI GGCGCC 1 cut(s) 616
Sfr274I CTCGAG 1 cut(s) 803
SlaI CTCGAG 1 cut(s) 803
SmlI CTYRAG 2 cut(s) 517, 803
SmoI CTYRAG 2 cut(s) 517, 803
Sse9I AATT 6 cut(s) 692, 707, 741, 775, 940, 967
SsiI CCGC 1 cut(s) 255
SspDI GGCGCC 1 cut(s) 614
SspMI CTAG 2 cut(s) 585, 611
SstI GAGCTC 1 cut(s) 524
StyD4I CCNGG 1 cut(s) 402
StyI CCWWGG 1 cut(s) 597
TaaI ACNGT 3 cut(s) 98, 567, 651
TaiI ACGT 1 cut(s) 535
TaqI TCGA 5 cut(s) 351, 363, 548, 624, 804
TasI AATT 6 cut(s) 692, 707, 741, 775, 940, 967
TauI GCSGC 1 cut(s) 258
TfiI GAWTC 1 cut(s) 360
Tru1I TTAA 3 cut(s) 312, 540, 569
Tru9I TTAA 3 cut(s) 312, 540, 569
TscAI CASTG 1 cut(s) 493
TseFI GTSAC 3 cut(s) 113, 370, 488
TseI GCWGC 1 cut(s) 581
Tsp45I GTSAC 3 cut(s) 113, 370, 488
TspDTI ATGAA 6 cut(s) 77, 105, 648, 767, 918, 994
TspRI CASTG 1 cut(s) 493
XapI RAATTY 1 cut(s) 707
XhoI CTCGAG 1 cut(s) 803
XspI CTAG 2 cut(s) 585, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.