AT5G07700
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0020879
Physical Location & Seq
Forward (+)
2450027 .. 2451807
1781 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G07700.1

Sequence Viewer

Length: 1017 bp
ATGTCAAAGAGACCATATTGTATCGGAGAAGGACTGAAGAAAGGAGCATGGACTACAGAAGAGGATAAAAAACTCATCTCTTATATCCACGACCACGGTGAAGGAGGCTGGCGTGACATTCCAGAAAAAGCTGGGCTGAAACGGTGTGGAAAGAGTTGTAGATTACGGTGGACTAACTATTTGAAACCAGATATCAAGAGAGGAGAGTTTAGCTATGAGGAAGAGCAGATTATCATCATGCTTCATGCATCTCGTGGCAATAAGTGGTCTGTCATAGCTAGACATTTGCCAAAAAGAACGGATAACGAGGTCAAAAACTATTGGAACACACATCTCAAGAAACGTTTAATCGATGATGGCATTGATCCCGTGACACACAAGCCACTAGCTTCTTCTAACCCTAATCCAGTTGAGCCCATGAAGTTCGATTTCCAAAAGAAATCCAATCAGGATGAGCACTCTTCACAGTCTAGTTCTACAACTCCAGCATCTCTTCCCCTTTCCTCGAATTTGAACAGTGTTAAATCCAAAATTAGCAGTGGTGAGACGCAGATAGAAAGTGGTCACGTGAGCTGCAAGAAACGTTTTGGACGATCGAGCTCTACATCAAGGTTGTTAAACAAAGTTGCAGCTAGAGCTTCTTCCATCGGCAACATCTTATCAACATCCATAGAAGGAACCTTGAGATCTCCTGCATCATCTTCAGGACTCCCAGACTCGTTCTCTCAATCATATGAGTACATGATCGATAACAAAGAAGATCTCGGTACGAGCATTGATCTCAACATCCCCGAGTATGATTTCCCACAGTTTCTTGAGCAACTCATTAACGATGACGACGAAAATGAGAACATTGTTGGGCCCGAACAAGATCTCCTTATGTCCGATTTCCCATCAACATTCGTTGATGAAGACGATATACTTGGAGACATAACCAGTTGGTCAACTTATCTTCTTGACCATCCCAATTTTATGTATGAATCGGATCAAGATTCCGACGAGAAGAACTTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000162 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002213 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006082 GO:0006109 GO:0006355 GO:0006357 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009267 GO:0009308 GO:0009309 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009759 GO:0009819 GO:0009867 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010104 GO:0010105 GO:0010438 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010675 GO:0014070 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023051 GO:0023052 GO:0023057 GO:0030054 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0031930 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042343 GO:0042401 GO:0042430 GO:0042435 GO:0042493 GO:0042545 GO:0042594 GO:0042742 GO:0042762 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043436 GO:0043455 GO:0043565 GO:0044106 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0045087 GO:0045229 GO:0045893 GO:0045935 GO:0046219 GO:0046394 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0055044 GO:0060255 GO:0062012 GO:0065007 GO:0065009 GO:0070297 GO:0070298 GO:0070727 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071496 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1900376 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1902680 GO:1903506 GO:1903508 GO:1905255 GO:2000070 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

338

Amino Acids

38.19

Weight (kDa)

5.3

Isoelectric Point (pI)

60.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 2e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 6.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 114 6.5e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07690 AT5G07700 AT5G07700 AT5G61420 AT5G61420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 2 cut(s) 343, 583
AclWI GGATC 2 cut(s) 359, 993
AcsI RAATTY 1 cut(s) 508
AcuI CTGAAG 2 cut(s) 56, 687
AcvI CACGTG 1 cut(s) 568
AfaI GTAC 2 cut(s) 740, 769
AgsI TTSAA 2 cut(s) 184, 514
AloI GAACNNNNNNTCC 2 cut(s) 858, 890
AluBI AGCT 8 cut(s) 131, 213, 278, 389, 573, 600, 632, 638
AluI AGCT 8 cut(s) 131, 213, 278, 389, 573, 600, 632, 638
Alw21I GWGCWC 2 cut(s) 459, 602
Alw26I GTCTC 3 cut(s) 4, 539, 921
AlwI GGATC 2 cut(s) 359, 993
Ama87I CYCGRG 1 cut(s) 791
AoxI GGCC 1 cut(s) 860
ApaI GGGCCC 1 cut(s) 864
ApeKI GCWGC 2 cut(s) 573, 629
ApoI RAATTY 1 cut(s) 508
ArsI GACNNNNNNTTYG 2 cut(s) 163, 195
Asp700I GAANNNNTTC 1 cut(s) 1007
AspS9I GGNCC 2 cut(s) 860, 861
AsuHPI GGTGA 2 cut(s) 110, 554
AvaI CYCGRG 1 cut(s) 791
BaeGI GKGCMC 1 cut(s) 864
BanII GRGCYC 3 cut(s) 417, 602, 864
BarI GAAGNNNNNNTAC 2 cut(s) 903, 935
BauI CACGAG 1 cut(s) 252
BbrPI CACGTG 1 cut(s) 568
BbsI GAAGAC 1 cut(s) 918
Bbv12I GWGCWC 2 cut(s) 459, 602
BbvI GCAGC 2 cut(s) 560, 641
BccI CCATC 4 cut(s) 350, 653, 901, 969
BcoDI GTCTC 3 cut(s) 4, 539, 921
BfaI CTAG 4 cut(s) 279, 386, 471, 633
BfmI CTRYAG 1 cut(s) 54
BglII AGATCT 3 cut(s) 686, 760, 871
BisI GCNGC 2 cut(s) 574, 630
BlsI GCNGC 2 cut(s) 575, 631
BmeT110I CYCGRG 1 cut(s) 791
BmgT120I GGNCC 2 cut(s) 860, 861
BmiI GGNNCC 2 cut(s) 679, 862
BmsI GCATC 3 cut(s) 257, 497, 704
BpiI GAAGAC 1 cut(s) 918
BpmI CTGGAG 1 cut(s) 468
BpuEI CTTGAG 3 cut(s) 320, 703, 836
Bsa29I ATCGAT 2 cut(s) 351, 747
BsaAI YACGTR 1 cut(s) 568
BsaBI GATNNNNATC 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 4
BsaJI CCNNGG 1 cut(s) 94
BsaXI ACNNNNNCTCC 2 cut(s) 858, 888
Bse1I ACTGG 2 cut(s) 407, 936
Bse8I GATNNNNATC 1 cut(s) 233
BseCI ATCGAT 2 cut(s) 351, 747
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 4 cut(s) 457, 665, 786, 961
BseJI GATNNNNATC 1 cut(s) 233
BseNI ACTGG 2 cut(s) 407, 936
BseRI GAGGAG 1 cut(s) 216
BseSI GKGCMC 1 cut(s) 864
BseXI GCAGC 2 cut(s) 560, 641
BseYI CCCAGC 1 cut(s) 131
Bsh1285I CGRYCG 1 cut(s) 596
BshFI GGCC 1 cut(s) 862
BshVI ATCGAT 2 cut(s) 351, 747
BsiEI CGRYCG 1 cut(s) 596
BsiHKAI GWGCWC 2 cut(s) 459, 602
BsiHKCI CYCGRG 1 cut(s) 791
BsmAI GTCTC 3 cut(s) 4, 539, 921
BsmBI CGTCTC 1 cut(s) 539
BsnI GGCC 1 cut(s) 862
Bso31I GGTCTC 1 cut(s) 4
BsoBI CYCGRG 1 cut(s) 791
Bsp120I GGGCCC 1 cut(s) 860
Bsp1286I GDGCHC 4 cut(s) 417, 459, 602, 864
Bsp143I GATC 8 cut(s) 364, 593, 686, 744, 760, 778, 871, 985
BspANI GGCC 1 cut(s) 862
BspDI ATCGAT 2 cut(s) 351, 747
BspLI GGNNCC 2 cut(s) 679, 862
BspPI GGATC 2 cut(s) 359, 993
BspQI GCTCTTC 1 cut(s) 216
BspTNI GGTCTC 1 cut(s) 4
BsrI ACTGG 2 cut(s) 407, 936
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 8 cut(s) 364, 593, 686, 744, 760, 778, 871, 985
BssSI CACGAG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 252
Bst4CI ACNGT 6 cut(s) 98, 144, 168, 468, 518, 810
Bst6I CTCTTC 4 cut(s) 54, 216, 466, 498
BstBAI YACGTR 1 cut(s) 568
BstC8I GCNNGC 1 cut(s) 110
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 4 cut(s) 457, 665, 786, 961
BstKTI GATC 8 cut(s) 367, 596, 689, 747, 763, 781, 874, 988
BstMAI GTCTC 3 cut(s) 4, 539, 921
BstMBI GATC 8 cut(s) 364, 593, 686, 744, 760, 778, 871, 985
BstMCI CGRYCG 1 cut(s) 596
BstMWI GCNNNNNNNGC 1 cut(s) 635
BstSFI CTRYAG 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 864
BstV1I GCAGC 2 cut(s) 560, 641
BstV2I GAAGAC 1 cut(s) 918
BstX2I RGATCY 3 cut(s) 686, 760, 871
BstYI RGATCY 3 cut(s) 686, 760, 871
Bsu15I ATCGAT 2 cut(s) 351, 747
BsuRI GGCC 1 cut(s) 862
BsuTUI ATCGAT 2 cut(s) 351, 747
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 4 cut(s) 457, 665, 786, 961
BtsI GCAGTG 1 cut(s) 544
BtsIMutI CAGTG 2 cut(s) 523, 544
Cac8I GCNNGC 1 cut(s) 110
Cfr13I GGNCC 2 cut(s) 860, 861
ClaI ATCGAT 2 cut(s) 351, 747
CseI GACGC 1 cut(s) 556
Csp6I GTAC 2 cut(s) 739, 768
CviAII CATG 5 cut(s) 48, 238, 245, 418, 742
CviQI GTAC 2 cut(s) 739, 768
DpnI GATC 8 cut(s) 366, 595, 688, 746, 762, 780, 873, 987
DpnII GATC 8 cut(s) 364, 593, 686, 744, 760, 778, 871, 985
Eam1104I CTCTTC 4 cut(s) 54, 216, 466, 498
EarI CTCTTC 4 cut(s) 54, 216, 466, 498
Ecl136II GAGCTC 1 cut(s) 600
Eco24I GRGCYC 3 cut(s) 417, 602, 864
Eco31I GGTCTC 1 cut(s) 4
Eco32I GATATC 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 600
Eco57I CTGAAG 2 cut(s) 56, 687
Eco72I CACGTG 1 cut(s) 568
Eco88I CYCGRG 1 cut(s) 791
EcoICRI GAGCTC 1 cut(s) 600
EcoRV GATATC 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 250
EcoT38I GRGCYC 3 cut(s) 417, 602, 864
Esp3I CGTCTC 1 cut(s) 539
FaeI CATG 5 cut(s) 51, 241, 248, 421, 745
FalI AAGNNNNNCTT 3 cut(s) 861, 893, 995
FatI CATG 5 cut(s) 47, 237, 244, 417, 741
FauNDI CATATG 1 cut(s) 733
Fnu4HI GCNGC 2 cut(s) 574, 630
FokI GGATG 4 cut(s) 464, 652, 773, 948
FriOI GRGCYC 3 cut(s) 417, 602, 864
Fsp4HI GCNGC 2 cut(s) 574, 630
FspBI CTAG 4 cut(s) 279, 386, 471, 633
GluI GCNGC 2 cut(s) 574, 630
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 468
HaeIII GGCC 1 cut(s) 862
HgaI GACGC 1 cut(s) 556
Hin1II CATG 5 cut(s) 51, 241, 248, 421, 745
HincII GTYRAC 1 cut(s) 945
HindII GTYRAC 1 cut(s) 945
HinfI GANTC 4 cut(s) 708, 716, 980, 992
HphI GGTGA 2 cut(s) 110, 554
Hpy166II GTNNAC 2 cut(s) 171, 945
Hpy188I TCNGA 4 cut(s) 26, 886, 985, 997
Hpy188III TCNNGA 8 cut(s) 122, 196, 337, 449, 705, 815, 956, 989
Hpy8I GTNNAC 2 cut(s) 171, 945
Hpy99I CGWCG 2 cut(s) 842, 1001
HpyAV CCTTC 3 cut(s) 23, 95, 668
HpyCH4III ACNGT 6 cut(s) 98, 144, 168, 468, 518, 810
HpyCH4IV ACGT 3 cut(s) 343, 567, 583
HpyCH4V TGCA 4 cut(s) 248, 576, 629, 695
HpyF10VI GCNNNNNNNGC 1 cut(s) 635
HpySE526I ACGT 3 cut(s) 343, 567, 583
Hsp92II CATG 5 cut(s) 51, 241, 248, 421, 745
Kzo9I GATC 8 cut(s) 364, 593, 686, 744, 760, 778, 871, 985
LguI GCTCTTC 1 cut(s) 216
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 2 cut(s) 560, 641
LweI GCATC 3 cut(s) 257, 497, 704
MaeI CTAG 4 cut(s) 279, 386, 471, 633
MaeII ACGT 3 cut(s) 343, 567, 583
MaeIII GTNAC 3 cut(s) 113, 370, 563
MalI GATC 8 cut(s) 366, 595, 688, 746, 762, 780, 873, 987
MboI GATC 8 cut(s) 364, 593, 686, 744, 760, 778, 871, 985
MflI RGATCY 3 cut(s) 686, 760, 871
MhlI GDGCHC 4 cut(s) 417, 459, 602, 864
MluCI AATT 3 cut(s) 508, 531, 967
MlyI GAGTC 2 cut(s) 702, 710
MnlI CCTC 6 cut(s) 55, 98, 194, 211, 301, 514
Mph1103I ATGCAT 1 cut(s) 250
MroXI GAANNNNTTC 1 cut(s) 1007
MseI TTAA 4 cut(s) 347, 522, 617, 828
MwoI GCNNNNNNNGC 1 cut(s) 635
NdeI CATATG 1 cut(s) 733
NdeII GATC 8 cut(s) 364, 593, 686, 744, 760, 778, 871, 985
NlaIII CATG 5 cut(s) 51, 241, 248, 421, 745
NlaIV GGNNCC 2 cut(s) 679, 862
NmuCI GTSAC 3 cut(s) 113, 370, 563
NsiI ATGCAT 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 216
PcsI WCGNNNNNNNCGW 2 cut(s) 589, 837
PdmI GAANNNNTTC 1 cut(s) 1007
PfeI GAWTC 2 cut(s) 980, 992
PkrI GCNGC 2 cut(s) 575, 631
Ple19I CGATCG 1 cut(s) 596
PleI GAGTC 2 cut(s) 702, 710
PmaCI CACGTG 1 cut(s) 568
PmlI CACGTG 1 cut(s) 568
PpsI GAGTC 2 cut(s) 702, 710
Ppu21I YACGTR 1 cut(s) 568
Psp124BI GAGCTC 1 cut(s) 602
Psp1406I AACGTT 2 cut(s) 343, 583
PspCI CACGTG 1 cut(s) 568
PspFI CCCAGC 1 cut(s) 131
PspN4I GGNNCC 2 cut(s) 679, 862
PspOMI GGGCCC 1 cut(s) 860
PspPI GGNCC 2 cut(s) 860, 861
PsuI RGATCY 3 cut(s) 686, 760, 871
PvuI CGATCG 1 cut(s) 596
RsaI GTAC 2 cut(s) 740, 769
RsaNI GTAC 2 cut(s) 739, 768
SacI GAGCTC 1 cut(s) 602
SapI GCTCTTC 1 cut(s) 216
SaqAI TTAA 4 cut(s) 347, 522, 617, 828
SatI GCNGC 2 cut(s) 574, 630
Sau3AI GATC 8 cut(s) 364, 593, 686, 744, 760, 778, 871, 985
Sau96I GGNCC 2 cut(s) 860, 861
SchI GAGTC 2 cut(s) 702, 710
SduI GDGCHC 4 cut(s) 417, 459, 602, 864
SfaNI GCATC 3 cut(s) 257, 497, 704
SfcI CTRYAG 1 cut(s) 54
SmlI CTYRAG 3 cut(s) 335, 682, 815
SmoI CTYRAG 3 cut(s) 335, 682, 815
Sse9I AATT 3 cut(s) 508, 531, 967
SspMI CTAG 4 cut(s) 279, 386, 471, 633
SstI GAGCTC 1 cut(s) 602
TaaI ACNGT 6 cut(s) 98, 144, 168, 468, 518, 810
TaiI ACGT 3 cut(s) 346, 570, 586
TaqI TCGA 5 cut(s) 351, 426, 506, 596, 747
TasI AATT 3 cut(s) 508, 531, 967
TatI WGTACW 1 cut(s) 738
TfiI GAWTC 2 cut(s) 980, 992
Tru1I TTAA 4 cut(s) 347, 522, 617, 828
Tru9I TTAA 4 cut(s) 347, 522, 617, 828
TscAI CASTG 2 cut(s) 523, 544
TseFI GTSAC 3 cut(s) 113, 370, 563
TseI GCWGC 2 cut(s) 573, 629
Tsp45I GTSAC 3 cut(s) 113, 370, 563
TspDTI ATGAA 4 cut(s) 233, 434, 924, 993
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 2 cut(s) 523, 544
XapI RAATTY 1 cut(s) 508
XmnI GAANNNNTTC 1 cut(s) 1007
XspI CTAG 4 cut(s) 279, 386, 471, 633
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.