AT5G61420
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0020879
Physical Location & Seq
Reverse (-)
24689069 .. 24691187
2119 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61420.1

Sequence Viewer

Length: 864 bp
ATGCTTCATGCTTCTCGTGGCAACAAGTGGTCGGTCATAGCGAGACATTTACCTAGAAGAACAGACAACGAGATCAAGAACTACTGGAACACGCATCTCAAAAAACGTTTGATGGAACAGGGTATTGATCCCGTGACTCACAAGCCACTGGCTTCTAGTTCCAACCCTACGGTCGATGAGAATTTGAATTCCCCAAATGCCTCTAGTTCCGACAAGCAATACTCCCGATCGAGCTCAATGCCTTTTCTGTCTCGTCCTCCTCCATCCAGTTGCAACATGGTTTCCAAGGTCTCCGAGCTTAGCAGCAATGATGGGACACCGATTCAAGGCAGTTCCTTGAGTTGCAAGAAACGTTTCAAGAAATCAAGTTCTACATCAAGGCTCTTGAACAAAGTTGCGGCTAAGGCCACTTCCATCAAAGATATATTGTCGGCTTCCATGGAAGGTAGCTTGAGTGCTACTACAATATCACATGCAAGCTTTTTTAATGGCTTCACTGAGCAGATTCGCAATGAAGAGGATAGTTCTAACACATCCCTGACAAATACTCTTGCTGAATTTGATCCCTTCTCCCCATCATCGTTGTACCCCGAACATGAGATCAATGCTACTTCTGATCTCAACATGGACCAAGATTACGATTTTTCACAATTTTTCGAAAAATTCGGAGGAGATAACCACAATGAGGAGAACAGTATGAATGATCTCCTTATGTCCGATGTTTCCCAAGAAGTCTCATCAACTAGCGTTGATGATCAAGACAATATGGTAGGAAACTTCGAGGGATGGTCAAATTATCTTCTTGACCATACCAATTTTATGTATGACACCGACTCAGACTCGCTTGAAAAGCATTTCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000162 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002213 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006082 GO:0006109 GO:0006355 GO:0006357 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009267 GO:0009308 GO:0009309 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009759 GO:0009819 GO:0009867 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010104 GO:0010105 GO:0010438 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010675 GO:0014070 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023051 GO:0023052 GO:0023057 GO:0030054 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0031930 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042343 GO:0042401 GO:0042430 GO:0042435 GO:0042493 GO:0042545 GO:0042594 GO:0042742 GO:0042762 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043436 GO:0043455 GO:0043565 GO:0044106 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0045087 GO:0045229 GO:0045893 GO:0045935 GO:0046219 GO:0046394 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0055044 GO:0060255 GO:0062012 GO:0065007 GO:0065009 GO:0070297 GO:0070298 GO:0070727 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071496 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1900376 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1902680 GO:1903506 GO:1903508 GO:1905255 GO:2000070 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

287

Amino Acids

32.04

Weight (kDa)

5.09

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 2 - 33 4.2e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07690 AT5G07700 AT5G07700 AT5G61420 AT5G61420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 398
AclI AACGTT 2 cut(s) 106, 352
AclWI GGATC 2 cut(s) 122, 557
AcsI RAATTY 4 cut(s) 181, 187, 557, 662
AfaI GTAC 1 cut(s) 587
AfiI CCNNNNNNNGG 2 cut(s) 326, 685
AgsI TTSAA 5 cut(s) 187, 326, 358, 388, 848
AluBI AGCT 4 cut(s) 234, 298, 450, 480
AluI AGCT 4 cut(s) 234, 298, 450, 480
Alw21I GWGCWC 1 cut(s) 236
Alw26I GTCTC 4 cut(s) 37, 255, 295, 739
AlwI GGATC 2 cut(s) 122, 557
AoxI GGCC 1 cut(s) 405
ApeKI GCWGC 1 cut(s) 303
ApoI RAATTY 4 cut(s) 181, 187, 557, 662
Asp700I GAANNNNTTC 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 628
AsuII TTCGAA 1 cut(s) 657
AvaII GGWCC 1 cut(s) 628
BanII GRGCYC 1 cut(s) 236
BauI CACGAG 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 236
BbvI GCAGC 1 cut(s) 315
BccI CCATC 6 cut(s) 106, 271, 305, 422, 583, 780
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BclI TGATCA 1 cut(s) 754
BcoDI GTCTC 4 cut(s) 37, 255, 295, 739
BfaI CTAG 4 cut(s) 54, 156, 204, 744
BisI GCNGC 2 cut(s) 304, 399
BlpI GCTNAGC 1 cut(s) 299
BlsI GCNGC 2 cut(s) 305, 400
Bme18I GGWCC 1 cut(s) 628
BmgT120I GGNCC 1 cut(s) 628
BmsI GCATC 1 cut(s) 103
Bpu10I CCTNAGC 1 cut(s) 402
Bpu1102I GCTNAGC 1 cut(s) 299
Bpu14I TTCGAA 1 cut(s) 657
BpuEI CTTGAG 2 cut(s) 358, 472
BsaI GGTCTC 1 cut(s) 295
BsaJI CCNNGG 2 cut(s) 285, 438
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 685
Bse1I ACTGG 3 cut(s) 89, 153, 267
Bse3DI GCAATG 2 cut(s) 313, 517
BseDI CCNNGG 2 cut(s) 285, 438
BseGI GGATG 3 cut(s) 263, 533, 791
BseLI CCNNNNNNNGG 2 cut(s) 326, 685
BseMI GCAATG 2 cut(s) 313, 517
BseMII CTCAG 2 cut(s) 489, 849
BseNI ACTGG 3 cut(s) 89, 153, 267
BseRI GAGGAG 3 cut(s) 249, 684, 701
BseXI GCAGC 1 cut(s) 315
Bsh1285I CGRYCG 2 cut(s) 174, 230
BshFI GGCC 1 cut(s) 407
BsiEI CGRYCG 2 cut(s) 174, 230
BsiHKAI GWGCWC 1 cut(s) 236
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 2 cut(s) 326, 685
BsmAI GTCTC 4 cut(s) 37, 255, 295, 739
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 1 cut(s) 407
Bso31I GGTCTC 1 cut(s) 295
Bsp119I TTCGAA 1 cut(s) 657
Bsp1286I GDGCHC 1 cut(s) 236
Bsp143I GATC 8 cut(s) 72, 127, 227, 562, 600, 616, 703, 754
Bsp1720I GCTNAGC 1 cut(s) 299
Bsp19I CCATGG 1 cut(s) 438
BspACI CCGC 1 cut(s) 398
BspANI GGCC 1 cut(s) 407
BspCNI CTCAG 2 cut(s) 490, 848
BspPI GGATC 2 cut(s) 122, 557
BspT104I TTCGAA 1 cut(s) 657
BspTNI GGTCTC 1 cut(s) 295
BsrDI GCAATG 2 cut(s) 313, 517
BsrI ACTGG 3 cut(s) 89, 153, 267
BssECI CCNNGG 2 cut(s) 285, 438
BssMI GATC 8 cut(s) 72, 127, 227, 562, 600, 616, 703, 754
BssSI CACGAG 1 cut(s) 15
BssT1I CCWWGG 2 cut(s) 285, 438
Bst2BI CACGAG 1 cut(s) 15
Bst4CI ACNGT 2 cut(s) 172, 695
Bst6I CTCTTC 1 cut(s) 510
BstBI TTCGAA 1 cut(s) 657
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 4 cut(s) 299, 402, 498, 835
BstDSI CCRYGG 1 cut(s) 438
BstF5I GGATG 3 cut(s) 263, 533, 791
BstKTI GATC 8 cut(s) 75, 130, 230, 565, 603, 619, 706, 757
BstMAI GTCTC 4 cut(s) 37, 255, 295, 739
BstMBI GATC 8 cut(s) 72, 127, 227, 562, 600, 616, 703, 754
BstMCI CGRYCG 2 cut(s) 174, 230
BstMWI GCNNNNNNNGC 2 cut(s) 404, 850
BstNSI RCATGY 1 cut(s) 476
BstV1I GCAGC 1 cut(s) 315
BsuRI GGCC 1 cut(s) 407
BtgI CCRYGG 1 cut(s) 438
BtsCI GGATG 3 cut(s) 263, 533, 791
BtsIMutI CAGTG 2 cut(s) 146, 495
Cac8I GCNNGC 1 cut(s) 478
Cfr13I GGNCC 1 cut(s) 628
Csp6I GTAC 1 cut(s) 586
CviAII CATG 6 cut(s) 8, 277, 439, 473, 596, 625
CviQI GTAC 1 cut(s) 586
DdeI CTNAG 4 cut(s) 299, 402, 498, 835
DpnI GATC 8 cut(s) 74, 129, 229, 564, 602, 618, 705, 756
DpnII GATC 8 cut(s) 72, 127, 227, 562, 600, 616, 703, 754
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
Ecl136II GAGCTC 1 cut(s) 234
Eco130I CCWWGG 2 cut(s) 285, 438
Eco24I GRGCYC 1 cut(s) 236
Eco31I GGTCTC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 628
Eco53kI GAGCTC 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 234
EcoRI GAATTC 1 cut(s) 187
EcoT14I CCWWGG 2 cut(s) 285, 438
EcoT38I GRGCYC 1 cut(s) 236
ErhI CCWWGG 2 cut(s) 285, 438
FaeI CATG 6 cut(s) 11, 280, 442, 476, 599, 628
FaqI GGGAC 1 cut(s) 328
FatI CATG 6 cut(s) 7, 276, 438, 472, 595, 624
FauNDI CATATG 1 cut(s) 860
FbaI TGATCA 1 cut(s) 754
Fnu4HI GCNGC 2 cut(s) 304, 399
FokI GGATG 3 cut(s) 250, 520, 798
FriOI GRGCYC 1 cut(s) 236
Fsp4HI GCNGC 2 cut(s) 304, 399
FspBI CTAG 4 cut(s) 54, 156, 204, 744
GluI GCNGC 2 cut(s) 304, 399
HaeIII GGCC 1 cut(s) 407
Hin1II CATG 6 cut(s) 11, 280, 442, 476, 599, 628
HindIII AAGCTT 1 cut(s) 478
HinfI GANTC 5 cut(s) 136, 322, 505, 833, 839
Hpy188I TCNGA 6 cut(s) 211, 295, 616, 668, 718, 838
Hpy188III TCNNGA 6 cut(s) 76, 225, 358, 385, 758, 803
HpyAV CCTTC 2 cut(s) 437, 577
HpyCH4III ACNGT 2 cut(s) 172, 695
HpyCH4IV ACGT 2 cut(s) 106, 352
HpyCH4V TGCA 3 cut(s) 273, 345, 476
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 850
HpyF3I CTNAG 4 cut(s) 299, 402, 498, 835
HpySE526I ACGT 2 cut(s) 106, 352
Hsp92II CATG 6 cut(s) 11, 280, 442, 476, 599, 628
Ksp22I TGATCA 1 cut(s) 754
Kzo9I GATC 8 cut(s) 72, 127, 227, 562, 600, 616, 703, 754
LpnPI CCDG 5 cut(s) 70, 104, 134, 280, 551
Lsp1109I GCAGC 1 cut(s) 315
LweI GCATC 1 cut(s) 103
MaeI CTAG 4 cut(s) 54, 156, 204, 744
MaeII ACGT 2 cut(s) 106, 352
MaeIII GTNAC 1 cut(s) 133
MalI GATC 8 cut(s) 74, 129, 229, 564, 602, 618, 705, 756
MboI GATC 8 cut(s) 72, 127, 227, 562, 600, 616, 703, 754
MboII GAAGA 3 cut(s) 69, 527, 791
MhlI GDGCHC 1 cut(s) 236
MluCI AATT 7 cut(s) 181, 187, 557, 650, 662, 793, 814
MlyI GAGTC 3 cut(s) 130, 827, 833
MmeI TCCRAC 2 cut(s) 186, 234
MnlI CCTC 7 cut(s) 211, 267, 270, 511, 662, 679, 775
MroXI GAANNNNTTC 1 cut(s) 353
MseI TTAA 1 cut(s) 486
MwoI GCNNNNNNNGC 2 cut(s) 404, 850
NcoI CCATGG 1 cut(s) 438
NdeI CATATG 1 cut(s) 860
NdeII GATC 8 cut(s) 72, 127, 227, 562, 600, 616, 703, 754
NlaIII CATG 6 cut(s) 11, 280, 442, 476, 599, 628
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 1 cut(s) 476
NspV TTCGAA 1 cut(s) 657
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 353
PfeI GAWTC 2 cut(s) 322, 505
PkrI GCNGC 2 cut(s) 305, 400
Ple19I CGATCG 1 cut(s) 230
PleI GAGTC 3 cut(s) 130, 827, 833
PpsI GAGTC 3 cut(s) 130, 827, 833
Psp124BI GAGCTC 1 cut(s) 236
Psp1406I AACGTT 2 cut(s) 106, 352
PspPI GGNCC 1 cut(s) 628
PvuI CGATCG 1 cut(s) 230
RsaI GTAC 1 cut(s) 587
RsaNI GTAC 1 cut(s) 586
SacI GAGCTC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 2 cut(s) 304, 399
Sau3AI GATC 8 cut(s) 72, 127, 227, 562, 600, 616, 703, 754
Sau96I GGNCC 1 cut(s) 628
SchI GAGTC 3 cut(s) 130, 827, 833
SduI GDGCHC 1 cut(s) 236
SetI ASST 9 cut(s) 55, 109, 236, 291, 300, 355, 448, 452, 482
SfaNI GCATC 1 cut(s) 103
SfuI TTCGAA 1 cut(s) 657
SinI GGWCC 1 cut(s) 628
SmlI CTYRAG 2 cut(s) 337, 451
SmoI CTYRAG 2 cut(s) 337, 451
Sse9I AATT 7 cut(s) 181, 187, 557, 650, 662, 793, 814
SsiI CCGC 1 cut(s) 398
SspMI CTAG 4 cut(s) 54, 156, 204, 744
SstI GAGCTC 1 cut(s) 236
StyI CCWWGG 2 cut(s) 285, 438
TaaI ACNGT 2 cut(s) 172, 695
TaiI ACGT 2 cut(s) 109, 355
TaqI TCGA 4 cut(s) 174, 230, 657, 780
TaqII GACCGA 1 cut(s) 22
TasI AATT 7 cut(s) 181, 187, 557, 650, 662, 793, 814
TauI GCSGC 1 cut(s) 401
TfiI GAWTC 2 cut(s) 322, 505
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 2 cut(s) 153, 502
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 1 cut(s) 303
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 3 cut(s) 528, 713, 847
TspRI CASTG 2 cut(s) 153, 502
VpaK11BI GGWCC 1 cut(s) 628
XapI RAATTY 4 cut(s) 181, 187, 557, 662
XceI RCATGY 1 cut(s) 476
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 353
XspI CTAG 4 cut(s) 54, 156, 204, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.