AT5G08250

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
2653554 .. 2655870
2317 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G08250.2

Sequence Viewer

Length: 1467 bp
ATGCCCGTTTGGCCGTTGGTTGGCATGCTTCCTTCGTTGATATCCGCGGTACGAAGCAACATATACGAATGGCTGTCTGATGTTCTTATCAGCCAAAACGGGACATTCCGGTTTAGAGGTCCTTGGTTTAGCACCCTCAACTGCGTTGTTACCTGCGACCCAAGAAACGTTGAGCATCTTCTCAAGACCCGTTTCTCTATCTACCCAAAGGGTTCTTACTTCCGTGAGACCATGCAAGATCTACTCGGAGACGGGATTTTCAACACCGATGACGGAACGTGGCAACGACAAAGGAAAGCAGCAAGTGTCGAATTCCATTCGGCTAAATTCAGACAATTAACCAGTCAATCATTGCACGAACTCGTGCATAATCGACTTTTGCCGGTTCTAGAAACTTCCGGAAAGATTGATCTTCAGGACATTTTGTTAAGACTAACGTTCGACAATGTATGCATGATTGCTTTCGGGGTCGATCCAGGCTGTCTTAGTCCAAAACTACCCGAAATTCCTTTTGCAAAAGCCTTCGAGGACGCAACAGAAGCAACAGTTGTGAGATTTGTGATGCCTAAATTCGTGTGGAAGCTCATGAGGTCTCTTAATTTAGGAACGGAGAAGAAGCTAAAGGAATCAATAAATGGTGTGGATGATTTCGCTGAAGAAGTAATCCGGACGAGGAAGAAAGAGATGTCTCTAGAGACTGAAATCGCGAAGAGACCTGATCTCTTGACTATTTTTATGGGTCTACGAGACGAAAATGGACAGAAATTTTCAGATAAGTTCTTGCGTGATATTTGTGTGAACTTCATACTTGCTGGGAGAGACACTTCCTCTGTGGCTCTAAGCTGGTTTTTCTGGTTAATCGAGAAGAATCCGGAAGTGGAGGAGAAAATTATGATGGGAATTTGCAAGATTCTTGAGCAGAGGGTTGATCATGGAGATACAAAGAAGAACATGGAATATGAGCCCGTCTTCAGACCAGAAGAGATCAAGAAAATGGATTATCTACAAGCTGCTTTGTCTGAGACTCTTAGATTGTATCCCTCTGTTCCAGTCGATCACAAAGAGGTACTTGAAGACGATGTATTTCCAGATGGGACGAAATTAAAAAAAGGAGAAAAGGTTATATATGCAATATACGCGATGGGACGTATGGAAACAATTTGGGGGAAAGACTGTCGTGAGTTCAAGCCAGAAAGGTGGTTAAGAGACGGCAGGTACATGAGTGAGTCGGCCTATAAGTTCACGGCCTTCAATGGTGGTCCTCGGCTATGTCTAGGCAAGGATTTTGCGTATTACCAAATGAGATATGTAGCGGCCGCCATTATTTACCGGTATAAGGTTAGGGTTGATGATAAGGGTGGTCATAAGGTTGAGCCAAAGATGGCTCTAACTATGTACATGAAGCATGGCTTGAAGGTGAATATGGTCAAGAGGAGTGTCTCTGAGATAGACCACTACTACTGCTGA

Protein Analysis

488

Amino Acids

56.59

Weight (kDa)

8.51

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 64 - 523 2.1e-67 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010120)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 161, 1203
AccI GTMKAC 1 cut(s) 742
AccII CGCG 3 cut(s) 47, 707, 1139
AccIII TCCGGA 3 cut(s) 398, 666, 871
AciI CCGC 4 cut(s) 45, 47, 1313, 1317
AclI AACGTT 2 cut(s) 168, 437
AclWI GGATC 1 cut(s) 467
AcoI YGGCCR 2 cut(s) 11, 1314
AcsI RAATTY 6 cut(s) 311, 326, 504, 569, 764, 900
AcuI CTGAAG 3 cut(s) 398, 675, 955
AfaI GTAC 4 cut(s) 51, 1068, 1217, 1397
AfiI CCNNNNNNNGG 2 cut(s) 20, 1336
AgeI ACCGGT 1 cut(s) 1329
AgsI TTSAA 5 cut(s) 262, 1073, 1186, 1252, 1414
AjnI CCWGG 1 cut(s) 475
AluBI AGCT 4 cut(s) 583, 619, 843, 1010
AluI AGCT 4 cut(s) 583, 619, 843, 1010
AlwI GGATC 1 cut(s) 467
Aor13HI TCCGGA 3 cut(s) 398, 666, 871
AoxI GGCC 4 cut(s) 11, 1230, 1245, 1314
ApeKI GCWGC 2 cut(s) 299, 1010
ApoI RAATTY 6 cut(s) 311, 326, 504, 569, 764, 900
AsiGI ACCGGT 1 cut(s) 1329
AspS9I GGNCC 2 cut(s) 119, 1259
AsuHPI GGTGA 1 cut(s) 1429
AvaII GGWCC 2 cut(s) 119, 1259
BaeI ACNNNNGTAYC 2 cut(s) 1207, 1240
BanII GRGCYC 1 cut(s) 966
BauI CACGAG 1 cut(s) 362
BbsI GAAGAC 2 cut(s) 961, 1080
BbvI GCAGC 2 cut(s) 311, 997
BccI CCATC 4 cut(s) 889, 1085, 1135, 1375
BceAI ACGGC 2 cut(s) 1225, 1260
BciT130I CCWGG 1 cut(s) 477
BciVI GTATCC 1 cut(s) 1047
BclI TGATCA 1 cut(s) 928
BfaI CTAG 3 cut(s) 389, 692, 1274
BfuAI ACCTGC 2 cut(s) 161, 1203
BfuI GTATCC 1 cut(s) 1047
BglI GCCNNNNNGGC 1 cut(s) 10
BglII AGATCT 1 cut(s) 238
BisI GCNGC 4 cut(s) 300, 1011, 1314, 1317
BlsI GCNGC 4 cut(s) 301, 1012, 1315, 1318
Bme1390I CCNGG 1 cut(s) 477
Bme18I GGWCC 2 cut(s) 119, 1259
BmgT120I GGNCC 2 cut(s) 119, 1259
BmrFI CCNGG 1 cut(s) 477
BmsI GCATC 2 cut(s) 184, 552
BpiI GAAGAC 2 cut(s) 961, 1080
BpuEI CTTGAG 2 cut(s) 167, 935
BsaI GGTCTC 3 cut(s) 221, 597, 706
BsaJI CCNNGG 3 cut(s) 45, 122, 1262
BsaWI WCCGGW 5 cut(s) 108, 398, 666, 871, 1329
BsaXI ACNNNNNCTCC 2 cut(s) 1104, 1134
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 1336
Bse118I RCCGGY 2 cut(s) 382, 1329
Bse1I ACTGG 2 cut(s) 342, 1049
Bse3DI GCAATG 1 cut(s) 350
BseAI TCCGGA 3 cut(s) 398, 666, 871
BseBI CCWGG 1 cut(s) 477
BseDI CCNNGG 3 cut(s) 45, 122, 1262
BseGI GGATG 1 cut(s) 649
BseLI CCNNNNNNNGG 2 cut(s) 20, 1336
BseMI GCAATG 1 cut(s) 350
BseMII CTCAG 2 cut(s) 1011, 1434
BseNI ACTGG 2 cut(s) 342, 1049
BseRI GAGGAG 2 cut(s) 896, 1447
BseX3I CGGCCG 1 cut(s) 1314
BseXI GCAGC 2 cut(s) 311, 997
BseYI CCCAGC 1 cut(s) 812
Bsh1236I CGCG 3 cut(s) 47, 707, 1139
Bsh1285I CGRYCG 1 cut(s) 1317
BshFI GGCC 4 cut(s) 13, 1232, 1247, 1316
BshTI ACCGGT 1 cut(s) 1329
BsiEI CGRYCG 1 cut(s) 1317
BsiSI CCGG 6 cut(s) 109, 383, 399, 667, 872, 1330
BslFI GGGAC 3 cut(s) 115, 1108, 1158
BslI CCNNNNNNNGG 2 cut(s) 20, 1336
BsmBI CGTCTC 3 cut(s) 243, 741, 1200
BsmFI GGGAC 3 cut(s) 115, 1108, 1158
BsnI GGCC 4 cut(s) 13, 1232, 1247, 1316
Bso31I GGTCTC 3 cut(s) 221, 597, 706
Bsp1286I GDGCHC 1 cut(s) 966
Bsp13I TCCGGA 3 cut(s) 398, 666, 871
Bsp1407I TGTACA 1 cut(s) 1395
Bsp143I GATC 7 cut(s) 238, 409, 472, 718, 928, 984, 1054
Bsp68I TCGCGA 1 cut(s) 707
BspACI CCGC 4 cut(s) 45, 47, 1313, 1317
BspANI GGCC 4 cut(s) 13, 1232, 1247, 1316
BspCNI CTCAG 2 cut(s) 1012, 1435
BspEI TCCGGA 3 cut(s) 398, 666, 871
BspFNI CGCG 3 cut(s) 47, 707, 1139
BspHI TCATGA 1 cut(s) 585
BspMI ACCTGC 2 cut(s) 161, 1203
BspPI GGATC 1 cut(s) 467
BspTNI GGTCTC 3 cut(s) 221, 597, 706
BsrDI GCAATG 1 cut(s) 350
BsrFI RCCGGY 2 cut(s) 382, 1329
BsrGI TGTACA 1 cut(s) 1395
BsrI ACTGG 2 cut(s) 342, 1049
BssAI RCCGGY 2 cut(s) 382, 1329
BssECI CCNNGG 3 cut(s) 45, 122, 1262
BssMI GATC 7 cut(s) 238, 409, 472, 718, 928, 984, 1054
BssSI CACGAG 1 cut(s) 362
BssT1I CCWWGG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 362
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 2 cut(s) 547, 1175
Bst6I CTCTTC 2 cut(s) 704, 975
BstAUI TGTACA 1 cut(s) 1395
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 5 cut(s) 485, 839, 1020, 1028, 1443
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 649
BstFNI CGCG 3 cut(s) 47, 707, 1139
BstKTI GATC 7 cut(s) 241, 412, 475, 721, 931, 987, 1057
BstMBI GATC 7 cut(s) 238, 409, 472, 718, 928, 984, 1054
BstMCI CGRYCG 1 cut(s) 1317
BstMWI GCNNNNNNNGC 3 cut(s) 10, 539, 1136
BstNI CCWGG 1 cut(s) 477
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 475
BstUI CGCG 3 cut(s) 47, 707, 1139
BstV1I GCAGC 2 cut(s) 311, 997
BstV2I GAAGAC 2 cut(s) 961, 1080
BstX2I RGATCY 1 cut(s) 238
BstXI CCANNNNNNTGG 1 cut(s) 1197
BstYI RGATCY 1 cut(s) 238
BstZI CGGCCG 1 cut(s) 1314
BsuI GTATCC 1 cut(s) 1047
BsuRI GGCC 4 cut(s) 13, 1232, 1247, 1316
BtgI CCRYGG 1 cut(s) 45
BtgZI GCGATG 1 cut(s) 1154
BtsCI GGATG 1 cut(s) 649
BtuMI TCGCGA 1 cut(s) 707
BveI ACCTGC 2 cut(s) 161, 1203
Cac8I GCNNGC 1 cut(s) 26
CciI TCATGA 1 cut(s) 585
CciNI GCGGCCGC 1 cut(s) 1314
Cfr10I RCCGGY 2 cut(s) 382, 1329
Cfr13I GGNCC 2 cut(s) 119, 1259
Cfr42I CCGCGG 1 cut(s) 48
CseI GACGC 1 cut(s) 539
Csp6I GTAC 4 cut(s) 50, 1067, 1216, 1396
CspAI ACCGGT 1 cut(s) 1329
CviAII CATG 9 cut(s) 25, 232, 454, 586, 932, 952, 1219, 1399, 1406
CviQI GTAC 4 cut(s) 50, 1067, 1216, 1396
DdeI CTNAG 5 cut(s) 485, 839, 1020, 1028, 1443
DpnI GATC 7 cut(s) 240, 411, 474, 720, 930, 986, 1056
DpnII GATC 7 cut(s) 238, 409, 472, 718, 928, 984, 1054
EaeI YGGCCR 2 cut(s) 11, 1314
EagI CGGCCG 1 cut(s) 1314
Eam1104I CTCTTC 2 cut(s) 704, 975
EarI CTCTTC 2 cut(s) 704, 975
EclXI CGGCCG 1 cut(s) 1314
Eco130I CCWWGG 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 966
Eco31I GGTCTC 3 cut(s) 221, 597, 706
Eco32I GATATC 1 cut(s) 42
Eco47I GGWCC 2 cut(s) 119, 1259
Eco52I CGGCCG 1 cut(s) 1314
Eco57I CTGAAG 3 cut(s) 398, 675, 955
EcoO109I RGGNCCY 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 475
EcoRV GATATC 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 122
EcoT22I ATGCAT 1 cut(s) 455
EcoT38I GRGCYC 1 cut(s) 966
ErhI CCWWGG 1 cut(s) 122
Esp3I CGTCTC 3 cut(s) 243, 741, 1200
FaeI CATG 9 cut(s) 28, 235, 457, 589, 935, 955, 1222, 1402, 1409
FalI AAGNNNNNCTT 4 cut(s) 1053, 1085, 1394, 1426
FaqI GGGAC 3 cut(s) 115, 1108, 1158
FatI CATG 9 cut(s) 24, 231, 453, 585, 931, 951, 1218, 1398, 1405
FbaI TGATCA 1 cut(s) 928
FblI GTMKAC 1 cut(s) 742
Fnu4HI GCNGC 4 cut(s) 300, 1011, 1314, 1317
FokI GGATG 1 cut(s) 656
FriOI GRGCYC 1 cut(s) 966
Fsp4HI GCNGC 4 cut(s) 300, 1011, 1314, 1317
FspBI CTAG 3 cut(s) 389, 692, 1274
GluI GCNGC 4 cut(s) 300, 1011, 1314, 1317
GsaI CCCAGC 1 cut(s) 816
HaeIII GGCC 4 cut(s) 13, 1232, 1247, 1316
HapII CCGG 6 cut(s) 109, 383, 399, 667, 872, 1330
HgaI GACGC 1 cut(s) 539
Hin1II CATG 9 cut(s) 28, 235, 457, 589, 935, 955, 1222, 1402, 1409
HinfI GANTC 5 cut(s) 626, 868, 910, 1024, 1226
HpaII CCGG 6 cut(s) 109, 383, 399, 667, 872, 1330
HphI GGTGA 1 cut(s) 1429
Hpy166II GTNNAC 3 cut(s) 743, 799, 1242
Hpy188I TCNGA 7 cut(s) 79, 248, 332, 772, 974, 1021, 1444
Hpy8I GTNNAC 3 cut(s) 743, 799, 1242
HpyAV CCTTC 4 cut(s) 42, 532, 1258, 1408
HpyCH4III ACNGT 2 cut(s) 547, 1175
HpyCH4IV ACGT 4 cut(s) 168, 278, 437, 1147
HpyCH4V TGCA 7 cut(s) 235, 355, 367, 453, 515, 906, 1130
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 539, 1136
HpyF3I CTNAG 5 cut(s) 485, 839, 1020, 1028, 1443
HpySE526I ACGT 4 cut(s) 168, 278, 437, 1147
Hsp92II CATG 9 cut(s) 28, 235, 457, 589, 935, 955, 1222, 1402, 1409
Kpn2I TCCGGA 3 cut(s) 398, 666, 871
Ksp22I TGATCA 1 cut(s) 928
KspI CCGCGG 1 cut(s) 48
Kzo9I GATC 7 cut(s) 238, 409, 472, 718, 928, 984, 1054
Lsp1109I GCAGC 2 cut(s) 311, 997
LweI GCATC 2 cut(s) 184, 552
MaeI CTAG 3 cut(s) 389, 692, 1274
MaeII ACGT 4 cut(s) 168, 278, 437, 1147
MaeIII GTNAC 1 cut(s) 148
MalI GATC 7 cut(s) 240, 411, 474, 720, 930, 986, 1056
MboI GATC 7 cut(s) 238, 409, 472, 718, 928, 984, 1054
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 966
MlyI GAGTC 2 cut(s) 1018, 1235
Mph1103I ATGCAT 1 cut(s) 455
MroI TCCGGA 3 cut(s) 398, 666, 871
MseI TTAA 6 cut(s) 338, 428, 597, 857, 1103, 1202
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 6 cut(s) 109, 383, 399, 667, 872, 1330
MspR9I CCNGG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 477
MvnI CGCG 3 cut(s) 47, 707, 1139
MwoI GCNNNNNNNGC 3 cut(s) 10, 539, 1136
NdeII GATC 7 cut(s) 238, 409, 472, 718, 928, 984, 1054
NlaIII CATG 9 cut(s) 28, 235, 457, 589, 935, 955, 1222, 1402, 1409
NmeAIII GCCGAG 1 cut(s) 1243
NotI GCGGCCGC 1 cut(s) 1314
NruI TCGCGA 1 cut(s) 707
NsiI ATGCAT 1 cut(s) 455
NspI RCATGY 1 cut(s) 28
PaeI GCATGC 1 cut(s) 28
PagI TCATGA 1 cut(s) 585
PfeI GAWTC 3 cut(s) 626, 868, 910
PinAI ACCGGT 1 cut(s) 1329
PkrI GCNGC 4 cut(s) 301, 1012, 1315, 1318
PleI GAGTC 2 cut(s) 1018, 1234
PpsI GAGTC 2 cut(s) 1018, 1234
PpuMI RGGWCCY 1 cut(s) 119
Psp1406I AACGTT 2 cut(s) 168, 437
Psp5II RGGWCCY 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 475
PspFI CCCAGC 1 cut(s) 812
PspGI CCWGG 1 cut(s) 475
PspPI GGNCC 2 cut(s) 119, 1259
PspPPI RGGWCCY 1 cut(s) 119
PsuI RGATCY 1 cut(s) 238
RruI TCGCGA 1 cut(s) 707
RsaI GTAC 4 cut(s) 51, 1068, 1217, 1397
RsaNI GTAC 4 cut(s) 50, 1067, 1216, 1396
SacII CCGCGG 1 cut(s) 48
SaqAI TTAA 6 cut(s) 338, 428, 597, 857, 1103, 1202
SatI GCNGC 4 cut(s) 300, 1011, 1314, 1317
Sau3AI GATC 7 cut(s) 238, 409, 472, 718, 928, 984, 1054
Sau96I GGNCC 2 cut(s) 119, 1259
SchI GAGTC 2 cut(s) 1018, 1235
ScrFI CCNGG 1 cut(s) 477
SduI GDGCHC 1 cut(s) 966
SfaNI GCATC 2 cut(s) 184, 552
Sfr303I CCGCGG 1 cut(s) 48
SgrBI CCGCGG 1 cut(s) 48
SinI GGWCC 2 cut(s) 119, 1259
SmlI CTYRAG 2 cut(s) 182, 914
SmoI CTYRAG 2 cut(s) 182, 914
SphI GCATGC 1 cut(s) 28
SsiI CCGC 4 cut(s) 45, 47, 1313, 1317
SspMI CTAG 3 cut(s) 389, 692, 1274
StyD4I CCNGG 1 cut(s) 475
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 2 cut(s) 547, 1175
TaiI ACGT 4 cut(s) 171, 281, 440, 1150
TaqI TCGA 7 cut(s) 309, 373, 441, 471, 525, 861, 1053
TatI WGTACW 1 cut(s) 1395
TauI GCSGC 2 cut(s) 1316, 1319
TfiI GAWTC 3 cut(s) 626, 868, 910
Tru1I TTAA 6 cut(s) 338, 428, 597, 857, 1103, 1202
Tru9I TTAA 6 cut(s) 338, 428, 597, 857, 1103, 1202
TseI GCWGC 2 cut(s) 299, 1010
TspDTI ATGAA 2 cut(s) 793, 1415
TspGWI ACGGA 3 cut(s) 212, 288, 623
VpaK11BI GGWCC 2 cut(s) 119, 1259
XapI RAATTY 6 cut(s) 311, 326, 504, 569, 764, 900
XbaI TCTAGA 2 cut(s) 388, 691
XceI RCATGY 1 cut(s) 28
XmiI GTMKAC 1 cut(s) 742
XspI CTAG 3 cut(s) 389, 692, 1274
Zsp2I ATGCAT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.