Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010120

Physical Location & Seq

Genomic Coordinates Forward (+)

22978452 .. 22979591

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g24880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTCCTCCGACGATGAGACTTTTGCTGCTGCAAACTTAATTTCGAGGCAACATTTTTTCCTCGACCATGTCCATATATTGGGGCTCTTTCTGGCTCTTTGTGTTTTTGTAGTCATAAAAACCTTAAGGCAAAAGAAGCAAAATGGCATACCAGTTTGGCCAGTTCTTGGCATGTTCCCCTCTCTGTCTCTGGCGGTACTTGGTCTCCAAAACAACACATATGAGTGGCTCTCCAAAGCTCTTTGCCTCAAAAACGGAACGTTTCGATTCAAAGGCCCTTGGTTTAGCTGCCTCTTTGGAGTCATCACTTGTGACCCTCGTAACTTGGAGCACCTTCTCAAGACCAAGTTCTCCAATTACCCCAAAGGCCCTTATTTCCTAGACACCGTTAGAGATTTTCTCGGGGATGGAATATTCAGCGCGGACGGTATGAATTGGCAGTGCCAAAGGAAAACGGCGAGCATTGAGTTCCACTCAGCCAAGTTCCGGAAACTGACGGTGGATTCCTTGTTTGAGCTGGTTTACGCTCGGTTGTTACCTGTCTTGGAGGACTCCATAAAAAATTCGACCCAAATCGACCTCCAAGACATTCTTATGAGGTTGACTTTTGACAACATTTGCATGATCTCATTTGGGGTCGATCCCGGTTGCTTGCAGCGGGGTTTACCCAACATACCATTTGCTCAGGCTTTTGAGGACGCAACGACGGGAACGCTGATGCGCTTTGTAATCCCCACGTGCGTATGGAAGGCCATGAGGTGCCTCAACTTGGGTGGAGAGAGGAAGCTTAAGATGTCCATAAGAGAAGTGGATGAATTCGCAGATGATGTCATCCGGACAAGAAAGAAAGAACTAGCTTCACTGCTTAATAGTAACGATGAGATTTATTCAGAGAAGAAGCAAATTAAACCAGACCTGTTAACGGTGTTTATGGGGTTGAAAGACGAGAAGGGAGAGGCGTCTTCAGAAAAGTTCTTGAGGGATATATGCGTTAACTTTATATTGGCGGGGAGAGACACGTCATCGGTGGCATTGAGCTGGTTCTTCTGGCTGCTTCATCACAATCCGGAGGTGGAACACAAGATTCTTCAAGAAGTACGCAACATTGTGGGTACGAGATCGATCATCGGATCACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0012505 GO:0016053 GO:0019438 GO:0019748 GO:0019752 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046394 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

p450

Protein Analysis

380

Amino Acids

43.21

Weight (kDa)

8.46

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	101 - 373	9.8e-31	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08250 AT5G08250 AT5G23190
fragaria_vesca	FvH4_4g36980
malus_domestica	MD02G1296000.v1.1 MD13G1004700.v1.1 MD16G1003000.v1.1
prunus_persica	Prupe.1G348000_v2.0.a1
pyrus_communis	pycom02g24880 pycom13g00410 pycom16g00310
rosa_chinensis	RchiOBHm_Chr4g0446771
rosa_laevigata	RLG00000005633
rosa_multiflora	Rmu_sc0001753.1_g000031
rosa_roxburghii	Rroxscaffold_5G00387090
rosa_rugosa	Rorug04G0374400
rosa_samantha	Rh4AG435900 Rh4BG444600 Rh4CG462000 Rh4DG443700
rosa_wichuraiana	Rw4G037260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	759
AccB7I	CCANNNNNTGG	2 cut(s)	79, 167
AccII	CGCG	1 cut(s)	422
AccIII	TCCGGA	3 cut(s)	486, 834, 1066
AciI	CCGC	4 cut(s)	194, 422, 658, 1007
AclI	AACGTT	1 cut(s)	260
AclWI	GGATC	2 cut(s)	635, 1138
AcoI	YGGCCR	1 cut(s)	158
AcsI	RAATTY	2 cut(s)	562, 815
AcuI	CTGAAG	1 cut(s)	948
AcvI	CACGTG	1 cut(s)	738
AcyI	GRCGYC	1 cut(s)	959
AfaI	GTAC	3 cut(s)	198, 1098, 1114
AfiI	CCNNNNNNNGG	5 cut(s)	79, 167, 486, 769, 922
AflII	CTTAAG	2 cut(s)	124, 788
AflIII	ACRYGT	1 cut(s)	1017
AgsI	TTSAA	3 cut(s)	271, 940, 1091
AjiI	CACGTC	1 cut(s)	1020
AluBI	AGCT	6 cut(s)	239, 288, 517, 787, 857, 1038
AluI	AGCT	6 cut(s)	239, 288, 517, 787, 857, 1038
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	4 cut(s)	11, 192, 209, 1008
AlwI	GGATC	2 cut(s)	635, 1138
Ama87I	CYCGRG	1 cut(s)	401
Aor13HI	TCCGGA	3 cut(s)	486, 834, 1066
AoxI	GGCC	4 cut(s)	158, 274, 367, 750
ApeKI	GCWGC	5 cut(s)	26, 29, 288, 655, 1051
ApoI	RAATTY	2 cut(s)	562, 815
AspLEI	GCGC	2 cut(s)	422, 723
AspS9I	GGNCC	2 cut(s)	275, 368
AsuC2I	CCSGG	1 cut(s)	645
AvaI	CYCGRG	1 cut(s)	401
BalI	TGGCCA	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	759
BanII	GRGCYC	1 cut(s)	87
BbrPI	CACGTG	1 cut(s)	738
BbsI	GAAGAC	1 cut(s)	954
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	5 cut(s)	13, 16, 275, 667, 1038
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	1 cut(s)	471
BcnI	CCSGG	1 cut(s)	645
BcoDI	GTCTC	4 cut(s)	11, 192, 209, 1008
BfaI	CTAG	2 cut(s)	380, 854
BfrI	CTTAAG	2 cut(s)	124, 788
BisI	GCNGC	5 cut(s)	27, 30, 289, 656, 1052
BlsI	GCNGC	5 cut(s)	28, 31, 290, 657, 1053
Bme1390I	CCNGG	1 cut(s)	645
BmeT110I	CYCGRG	1 cut(s)	401
BmgBI	CACGTC	1 cut(s)	1020
BmgT120I	GGNCC	2 cut(s)	275, 368
BmiI	GGNNCC	1 cut(s)	761
BmrFI	CCNGG	1 cut(s)	645
BmsI	GCATC	1 cut(s)	708
BpiI	GAAGAC	1 cut(s)	954
BplI	GAGNNNNNCTC	6 cut(s)	215, 247, 384, 416, 458, 490
Bpu10I	CCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	2 cut(s)	323, 997
BpuMI	CCSGG	1 cut(s)	645
Bsa29I	ATCGAT	1 cut(s)	1121
BsaAI	YACGTR	1 cut(s)	738
BsaHI	GRCGYC	1 cut(s)	959
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	278
BsaWI	WCCGGW	3 cut(s)	486, 834, 1066
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	5 cut(s)	79, 167, 486, 769, 922
Bse1I	ACTGG	2 cut(s)	152, 161
BseAI	TCCGGA	3 cut(s)	486, 834, 1066
BseCI	ATCGAT	1 cut(s)	1121
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	3 cut(s)	412, 817, 831
BseLI	CCNNNNNNNGG	5 cut(s)	79, 167, 486, 769, 922
BseMII	CTCAG	2 cut(s)	489, 698
BseNI	ACTGG	2 cut(s)	152, 161
BseXI	GCAGC	5 cut(s)	13, 16, 275, 667, 1038
Bsh1236I	CGCG	1 cut(s)	422
BshFI	GGCC	4 cut(s)	160, 276, 369, 752
BshNI	GGYRCC	1 cut(s)	759
BshVI	ATCGAT	1 cut(s)	1121
BsiHKAI	GWGCWC	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	4 cut(s)	487, 645, 835, 1067
BslI	CCNNNNNNNGG	5 cut(s)	79, 167, 486, 769, 922
BsmAI	GTCTC	4 cut(s)	11, 192, 209, 1008
BsnI	GGCC	4 cut(s)	160, 276, 369, 752
Bso31I	GGTCTC	1 cut(s)	209
BsoBI	CYCGRG	1 cut(s)	401
Bsp1286I	GDGCHC	2 cut(s)	87, 333
Bsp13I	TCCGGA	3 cut(s)	486, 834, 1066
Bsp143I	GATC	5 cut(s)	624, 640, 1118, 1122, 1130
BspACI	CCGC	4 cut(s)	194, 422, 658, 1007
BspANI	GGCC	4 cut(s)	160, 276, 369, 752
BspCNI	CTCAG	2 cut(s)	488, 697
BspDI	ATCGAT	1 cut(s)	1121
BspEI	TCCGGA	3 cut(s)	486, 834, 1066
BspFNI	CGCG	1 cut(s)	422
BspLI	GGNNCC	1 cut(s)	761
BspPI	GGATC	2 cut(s)	635, 1138
BspT107I	GGYRCC	1 cut(s)	759
BspTI	CTTAAG	2 cut(s)	124, 788
BspTNI	GGTCTC	1 cut(s)	209
BsrI	ACTGG	2 cut(s)	152, 161
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	5 cut(s)	624, 640, 1118, 1122, 1130
BssNI	GRCGYC	1 cut(s)	959
BssT1I	CCWWGG	1 cut(s)	278
Bst4CI	ACNGT	4 cut(s)	388, 428, 499, 925
BstACI	GRCGYC	1 cut(s)	959
BstAFI	CTTAAG	2 cut(s)	124, 788
BstBAI	YACGTR	1 cut(s)	738
BstC8I	GCNNGC	2 cut(s)	460, 653
BstDEI	CTNAG	2 cut(s)	475, 684
BstF5I	GGATG	3 cut(s)	412, 817, 831
BstFNI	CGCG	1 cut(s)	422
BstHHI	GCGC	2 cut(s)	422, 723
BstKTI	GATC	5 cut(s)	627, 643, 1121, 1125, 1133
BstMAI	GTCTC	4 cut(s)	11, 192, 209, 1008
BstMBI	GATC	5 cut(s)	624, 640, 1118, 1122, 1130
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	643
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	5 cut(s)	13, 16, 275, 667, 1038
BstV2I	GAAGAC	1 cut(s)	954
Bsu15I	ATCGAT	1 cut(s)	1121
BsuRI	GGCC	4 cut(s)	160, 276, 369, 752
BsuTUI	ATCGAT	1 cut(s)	1121
BtrI	CACGTC	1 cut(s)	1020
BtsCI	GGATG	3 cut(s)	412, 817, 831
BtsI	GCAGTG	2 cut(s)	446, 860
BtsIMutI	CAGTG	2 cut(s)	446, 860
Cac8I	GCNNGC	2 cut(s)	460, 653
CfoI	GCGC	2 cut(s)	422, 723
Cfr13I	GGNCC	2 cut(s)	275, 368
ClaI	ATCGAT	1 cut(s)	1121
CseI	GACGC	2 cut(s)	707, 948
Csp6I	GTAC	3 cut(s)	197, 1097, 1113
CspCI	CAANNNNNGTGG	2 cut(s)	754, 789
CviAII	CATG	4 cut(s)	68, 172, 622, 754
CviQI	GTAC	3 cut(s)	197, 1097, 1113
DdeI	CTNAG	2 cut(s)	475, 684
DpnI	GATC	5 cut(s)	626, 642, 1120, 1124, 1132
DpnII	GATC	5 cut(s)	624, 640, 1118, 1122, 1130
EaeI	YGGCCR	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	948
Eco72I	CACGTG	1 cut(s)	738
Eco88I	CYCGRG	1 cut(s)	401
EcoO109I	RGGNCCY	2 cut(s)	275, 368
EcoRI	GAATTC	1 cut(s)	815
EcoT14I	CCWWGG	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	278
FaeI	CATG	4 cut(s)	71, 175, 625, 757
FalI	AAGNNNNNCTT	2 cut(s)	576, 608
FatI	CATG	4 cut(s)	67, 171, 621, 753
FauI	CCCGC	2 cut(s)	651, 1000
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	5 cut(s)	27, 30, 289, 656, 1052
FokI	GGATG	3 cut(s)	419, 818, 824
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	5 cut(s)	27, 30, 289, 656, 1052
FspBI	CTAG	2 cut(s)	380, 854
GlaI	GCGC	2 cut(s)	421, 722
GluI	GCNGC	5 cut(s)	27, 30, 289, 656, 1052
HaeIII	GGCC	4 cut(s)	160, 276, 369, 752
HapII	CCGG	4 cut(s)	487, 645, 835, 1067
HgaI	GACGC	2 cut(s)	707, 948
HhaI	GCGC	2 cut(s)	422, 723
Hin1I	GRCGYC	1 cut(s)	959
Hin1II	CATG	4 cut(s)	71, 175, 625, 757
Hin6I	GCGC	2 cut(s)	420, 721
HinP1I	GCGC	2 cut(s)	420, 721
HincII	GTYRAC	3 cut(s)	603, 921, 994
HindII	GTYRAC	3 cut(s)	603, 921, 994
HindIII	AAGCTT	1 cut(s)	785
HinfI	GANTC	5 cut(s)	267, 300, 503, 551, 1084
HpaI	GTTAAC	2 cut(s)	921, 994
HpaII	CCGG	4 cut(s)	487, 645, 835, 1067
Hpy166II	GTNNAC	5 cut(s)	523, 603, 665, 921, 994
Hpy188I	TCNGA	4 cut(s)	10, 892, 967, 1130
Hpy188III	TCNNGA	7 cut(s)	340, 487, 835, 976, 1067, 1091, 1134
Hpy8I	GTNNAC	5 cut(s)	523, 603, 665, 921, 994
Hpy99I	CGWCG	2 cut(s)	14, 709
HpyAV	CCTTC	3 cut(s)	344, 742, 943
HpyCH4III	ACNGT	4 cut(s)	388, 428, 499, 925
HpyCH4IV	ACGT	3 cut(s)	260, 737, 1019
HpyCH4V	TGCA	3 cut(s)	32, 621, 655
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	2 cut(s)	475, 684
HpySE526I	ACGT	3 cut(s)	260, 737, 1019
Hsp92I	GRCGYC	1 cut(s)	959
Hsp92II	CATG	4 cut(s)	71, 175, 625, 757
HspAI	GCGC	2 cut(s)	420, 721
Kpn2I	TCCGGA	3 cut(s)	486, 834, 1066
KspAI	GTTAAC	2 cut(s)	921, 994
Kzo9I	GATC	5 cut(s)	624, 640, 1118, 1122, 1130
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	5 cut(s)	13, 16, 275, 667, 1038
LweI	GCATC	1 cut(s)	708
MaeI	CTAG	2 cut(s)	380, 854
MaeII	ACGT	3 cut(s)	260, 737, 1019
MaeIII	GTNAC	4 cut(s)	311, 320, 534, 872
MalI	GATC	5 cut(s)	626, 642, 1120, 1124, 1132
MboI	GATC	5 cut(s)	624, 640, 1118, 1122, 1130
MboII	GAAGA	4 cut(s)	907, 954, 1036, 1079
MhlI	GDGCHC	2 cut(s)	87, 333
MlsI	TGGCCA	1 cut(s)	160
MluCI	AATT	6 cut(s)	39, 355, 433, 562, 815, 903
MluNI	TGGCCA	1 cut(s)	160
MlyI	GAGTC	2 cut(s)	309, 545
MmeI	TCCRAC	1 cut(s)	33
Mox20I	TGGCCA	1 cut(s)	160
MroI	TCCGGA	3 cut(s)	486, 834, 1066
MscI	TGGCCA	1 cut(s)	160
MseI	TTAA	7 cut(s)	38, 125, 789, 867, 906, 920, 993
MslI	CAYNNNNRTG	3 cut(s)	223, 593, 620
Msp20I	TGGCCA	1 cut(s)	160
MspA1I	CMGCKG	1 cut(s)	658
MspCI	CTTAAG	2 cut(s)	124, 788
MspI	CCGG	4 cut(s)	487, 645, 835, 1067
MspR9I	CCNGG	1 cut(s)	645
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	1 cut(s)	136
NciI	CCSGG	1 cut(s)	645
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	5 cut(s)	624, 640, 1118, 1122, 1130
NlaIII	CATG	4 cut(s)	71, 175, 625, 757
NlaIV	GGNNCC	1 cut(s)	761
NmuCI	GTSAC	1 cut(s)	311
NspI	RCATGY	1 cut(s)	175
PfeI	GAWTC	3 cut(s)	267, 503, 1084
PflFI	GACNNNGTC	1 cut(s)	68
PflMI	CCANNNNNTGG	2 cut(s)	79, 167
PkrI	GCNGC	5 cut(s)	28, 31, 290, 657, 1053
PleI	GAGTC	2 cut(s)	308, 545
PmaCI	CACGTG	1 cut(s)	738
PmlI	CACGTG	1 cut(s)	738
PpsI	GAGTC	2 cut(s)	308, 545
Ppu21I	YACGTR	1 cut(s)	738
Psp1406I	AACGTT	1 cut(s)	260
PspCI	CACGTG	1 cut(s)	738
PspN4I	GGNNCC	1 cut(s)	761
PspPI	GGNCC	2 cut(s)	275, 368
PsyI	GACNNNGTC	1 cut(s)	68
RsaI	GTAC	3 cut(s)	198, 1098, 1114
RsaNI	GTAC	3 cut(s)	197, 1097, 1113
RseI	CAYNNNNRTG	3 cut(s)	223, 593, 620
SaqAI	TTAA	7 cut(s)	38, 125, 789, 867, 906, 920, 993
SatI	GCNGC	5 cut(s)	27, 30, 289, 656, 1052
Sau3AI	GATC	5 cut(s)	624, 640, 1118, 1122, 1130
Sau96I	GGNCC	2 cut(s)	275, 368
SchI	GAGTC	2 cut(s)	309, 545
ScrFI	CCNGG	1 cut(s)	645
SduI	GDGCHC	2 cut(s)	87, 333
SfaNI	GCATC	1 cut(s)	708
SmiMI	CAYNNNNRTG	3 cut(s)	223, 593, 620
SmlI	CTYRAG	4 cut(s)	124, 338, 788, 976
SmoI	CTYRAG	4 cut(s)	124, 338, 788, 976
Sse9I	AATT	6 cut(s)	39, 355, 433, 562, 815, 903
SsiI	CCGC	4 cut(s)	194, 422, 658, 1007
SspI	AATATT	1 cut(s)	414
SspMI	CTAG	2 cut(s)	380, 854
StyD4I	CCNGG	1 cut(s)	643
StyI	CCWWGG	1 cut(s)	278
TaaI	ACNGT	4 cut(s)	388, 428, 499, 925
TaiI	ACGT	3 cut(s)	263, 740, 1022
TaqI	TCGA	7 cut(s)	44, 63, 265, 566, 576, 639, 1121
TasI	AATT	6 cut(s)	39, 355, 433, 562, 815, 903
TfiI	GAWTC	3 cut(s)	267, 503, 1084
Tru1I	TTAA	7 cut(s)	38, 125, 789, 867, 906, 920, 993
Tru9I	TTAA	7 cut(s)	38, 125, 789, 867, 906, 920, 993
TscAI	CASTG	2 cut(s)	446, 867
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	5 cut(s)	26, 29, 288, 655, 1051
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	3 cut(s)	446, 828, 1046
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	2 cut(s)	446, 867
Tth111I	GACNNNGTC	1 cut(s)	68
Van91I	CCANNNNNTGG	2 cut(s)	79, 167
Vha464I	CTTAAG	2 cut(s)	124, 788
XapI	RAATTY	2 cut(s)	562, 815
XceI	RCATGY	1 cut(s)	175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	805
XspI	CTAG	2 cut(s)	380, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.