Cytochrome p450
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G08250 AT5G08250 AT5G23190 |
| fragaria_vesca | FvH4_4g36980 |
| malus_domestica | MD02G1296000.v1.1 MD13G1004700.v1.1 MD16G1003000.v1.1 |
| prunus_persica | Prupe.1G348000_v2.0.a1 |
| pyrus_communis | pycom02g24880 pycom13g00410 pycom16g00310 |
| rosa_chinensis | RchiOBHm_Chr4g0446771 |
| rosa_laevigata | RLG00000005633 |
| rosa_multiflora | Rmu_sc0001753.1_g000031 |
| rosa_roxburghii | Rroxscaffold_5G00387090 |
| rosa_rugosa | Rorug04G0374400 |
| rosa_samantha | Rh4AG435900 Rh4BG444600 Rh4CG462000 Rh4DG443700 |
| rosa_wichuraiana | Rw4G037260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 876 |
| Acc65I | GGTACC | 1 cut(s) | 1605 |
| AccB1I | GGYRCC | 1 cut(s) | 1605 |
| AccI | GTMKAC | 1 cut(s) | 684 |
| AccII | CGCG | 3 cut(s) | 467, 545, 674 |
| AccIII | TCCGGA | 2 cut(s) | 1129, 1354 |
| AcoI | YGGCCR | 4 cut(s) | 69, 200, 1483, 1702 |
| AcsI | RAATTY | 2 cut(s) | 1034, 1511 |
| AcuI | CTGAAG | 2 cut(s) | 339, 1293 |
| AcyI | GRCGYC | 1 cut(s) | 873 |
| AfaI | GTAC | 7 cut(s) | 240, 806, 1304, 1403, 1451, 1607, 1664 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 121, 209, 1171, 1464, 1546, 1615 |
| AflIII | ACRYGT | 1 cut(s) | 1080 |
| AgeI | ACCGGT | 1 cut(s) | 1602 |
| AgsI | TTSAA | 9 cut(s) | 463, 560, 1003, 1154, 1240, 1340, 1372, 1525, 1681 |
| AjiI | CACGTC | 2 cut(s) | 480, 1083 |
| AjnI | CCWGG | 1 cut(s) | 688 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 707, 739 |
| AluBI | AGCT | 8 cut(s) | 127, 524, 703, 832, 898, 1101, 1280, 1648 |
| AluI | AGCT | 8 cut(s) | 127, 524, 703, 832, 898, 1101, 1280, 1648 |
| Alw21I | GWGCWC | 4 cut(s) | 129, 378, 900, 1143 |
| Alw26I | GTCTC | 4 cut(s) | 53, 420, 470, 1071 |
| Ama87I | CYCGRG | 2 cut(s) | 446, 1457 |
| Aor13HI | TCCGGA | 2 cut(s) | 1129, 1354 |
| AoxI | GGCC | 8 cut(s) | 69, 187, 200, 319, 412, 732, 1483, 1702 |
| ApeKI | GCWGC | 6 cut(s) | 333, 484, 700, 1114, 1277, 1586 |
| ApoI | RAATTY | 2 cut(s) | 1034, 1511 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 532, 564 |
| AsiGI | ACCGGT | 1 cut(s) | 1602 |
| Asp718I | GGTACC | 1 cut(s) | 1605 |
| AspLEI | GCGC | 4 cut(s) | 768, 821, 1178, 1716 |
| AspS9I | GGNCC | 4 cut(s) | 320, 413, 840, 1532 |
| AsuHPI | GGTGA | 2 cut(s) | 31, 98 |
| AsuNHI | GCTAGC | 1 cut(s) | 503 |
| AvaI | CYCGRG | 2 cut(s) | 446, 1457 |
| AvaII | GGWCC | 2 cut(s) | 840, 1532 |
| BalI | TGGCCA | 1 cut(s) | 1704 |
| BanI | GGYRCC | 1 cut(s) | 1605 |
| BanII | GRGCYC | 2 cut(s) | 129, 900 |
| BbsI | GAAGAC | 3 cut(s) | 503, 800, 876 |
| Bbv12I | GWGCWC | 4 cut(s) | 129, 378, 900, 1143 |
| BbvI | GCAGC | 6 cut(s) | 345, 496, 712, 1101, 1289, 1573 |
| BccI | CCATC | 8 cut(s) | 35, 446, 608, 787, 1255, 1352, 1458, 1601 |
| BceAI | ACGGC | 5 cut(s) | 221, 316, 516, 1498, 1533 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1540, 1574 |
| BciT130I | CCWGG | 1 cut(s) | 690 |
| BclI | TGATCA | 1 cut(s) | 3 |
| BcoDI | GTCTC | 4 cut(s) | 53, 420, 470, 1071 |
| BfaI | CTAG | 1 cut(s) | 504 |
| BfmI | CTRYAG | 1 cut(s) | 1441 |
| BfoI | RGCGCY | 2 cut(s) | 822, 1717 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 300 |
| BglII | AGATCT | 1 cut(s) | 439 |
| BisI | GCNGC | 8 cut(s) | 292, 334, 485, 701, 1115, 1278, 1486, 1587 |
| BlpI | GCTNAGC | 1 cut(s) | 1710 |
| BlsI | GCNGC | 8 cut(s) | 293, 335, 486, 702, 1116, 1279, 1487, 1588 |
| Bme1390I | CCNGG | 1 cut(s) | 690 |
| Bme18I | GGWCC | 2 cut(s) | 840, 1532 |
| BmeT110I | CYCGRG | 2 cut(s) | 446, 1457 |
| BmgBI | CACGTC | 2 cut(s) | 480, 1083 |
| BmgT120I | GGNCC | 4 cut(s) | 320, 413, 840, 1532 |
| BmiI | GGNNCC | 2 cut(s) | 1607, 1641 |
| BmrFI | CCNGG | 1 cut(s) | 690 |
| BmsI | GCATC | 2 cut(s) | 516, 733 |
| BmtI | GCTAGC | 1 cut(s) | 507 |
| BpiI | GAAGAC | 3 cut(s) | 503, 800, 876 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 429, 461, 503, 535 |
| Bpu10I | CCTNAGC | 2 cut(s) | 729, 1469 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1710 |
| BpuEI | CTTGAG | 2 cut(s) | 368, 1060 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1197 |
| BsaHI | GRCGYC | 1 cut(s) | 873 |
| BsaJI | CCNNGG | 6 cut(s) | 184, 316, 323, 543, 568, 688 |
| BsaWI | WCCGGW | 4 cut(s) | 1129, 1354, 1602, 1633 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 31, 231, 261 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 121, 209, 1171, 1464, 1546, 1615 |
| Bse118I | RCCGGY | 2 cut(s) | 202, 1602 |
| Bse3DI | GCAATG | 1 cut(s) | 1404 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1197 |
| BseAI | TCCGGA | 2 cut(s) | 1129, 1354 |
| BseBI | CCWGG | 1 cut(s) | 690 |
| BseDI | CCNNGG | 6 cut(s) | 184, 316, 323, 543, 568, 688 |
| BseGI | GGATG | 5 cut(s) | 111, 457, 748, 1363, 1630 |
| BseJI | GATNNNNATC | 1 cut(s) | 1197 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 121, 209, 1171, 1464, 1546, 1615 |
| BseMI | GCAATG | 1 cut(s) | 1404 |
| BseMII | CTCAG | 5 cut(s) | 534, 743, 813, 1088, 1701 |
| BseRI | GAGGAG | 3 cut(s) | 9, 12, 864 |
| BseX3I | CGGCCG | 1 cut(s) | 1483 |
| BseXI | GCAGC | 6 cut(s) | 345, 496, 712, 1101, 1289, 1573 |
| BseYI | CCCAGC | 1 cut(s) | 703 |
| Bsh1236I | CGCG | 3 cut(s) | 467, 545, 674 |
| Bsh1285I | CGRYCG | 2 cut(s) | 615, 1486 |
| BshFI | GGCC | 8 cut(s) | 71, 189, 202, 321, 414, 734, 1485, 1704 |
| BshNI | GGYRCC | 1 cut(s) | 1605 |
| BshTI | ACCGGT | 1 cut(s) | 1602 |
| BsiEI | CGRYCG | 2 cut(s) | 615, 1486 |
| BsiHKAI | GWGCWC | 4 cut(s) | 129, 378, 900, 1143 |
| BsiHKCI | CYCGRG | 2 cut(s) | 446, 1457 |
| BsiSI | CCGG | 8 cut(s) | 72, 203, 532, 1130, 1165, 1355, 1603, 1634 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 121, 209, 1171, 1464, 1546, 1615 |
| BsmAI | GTCTC | 4 cut(s) | 53, 420, 470, 1071 |
| BsmBI | CGTCTC | 1 cut(s) | 470 |
| BsnI | GGCC | 8 cut(s) | 71, 189, 202, 321, 414, 734, 1485, 1704 |
| BsoBI | CYCGRG | 2 cut(s) | 446, 1457 |
| Bsp1286I | GDGCHC | 4 cut(s) | 129, 378, 900, 1143 |
| Bsp13I | TCCGGA | 2 cut(s) | 1129, 1354 |
| Bsp1407I | TGTACA | 2 cut(s) | 1401, 1662 |
| Bsp143I | GATC | 7 cut(s) | 3, 439, 669, 971, 1192, 1198, 1321 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1710 |
| Bsp19I | CCATGG | 2 cut(s) | 184, 568 |
| BspANI | GGCC | 8 cut(s) | 71, 189, 202, 321, 414, 734, 1485, 1704 |
| BspCNI | CTCAG | 5 cut(s) | 533, 742, 814, 1089, 1702 |
| BspEI | TCCGGA | 2 cut(s) | 1129, 1354 |
| BspFNI | CGCG | 3 cut(s) | 467, 545, 674 |
| BspHI | TCATGA | 1 cut(s) | 1491 |
| BspLI | GGNNCC | 2 cut(s) | 1607, 1641 |
| BspMAI | CTGCAG | 1 cut(s) | 1445 |
| BspOI | GCTAGC | 1 cut(s) | 507 |
| BspT107I | GGYRCC | 1 cut(s) | 1605 |
| BsrDI | GCAATG | 1 cut(s) | 1404 |
| BsrFI | RCCGGY | 2 cut(s) | 202, 1602 |
| BsrGI | TGTACA | 2 cut(s) | 1401, 1662 |
| BssAI | RCCGGY | 2 cut(s) | 202, 1602 |
| BssECI | CCNNGG | 6 cut(s) | 184, 316, 323, 543, 568, 688 |
| BssMI | GATC | 7 cut(s) | 3, 439, 669, 971, 1192, 1198, 1321 |
| BssNI | GRCGYC | 1 cut(s) | 873 |
| BssT1I | CCWWGG | 4 cut(s) | 184, 316, 323, 568 |
| Bst2UI | CCWGG | 1 cut(s) | 690 |
| Bst4CI | ACNGT | 3 cut(s) | 433, 988, 1610 |
| Bst6I | CTCTTC | 1 cut(s) | 1242 |
| BstACI | GRCGYC | 1 cut(s) | 873 |
| BstAUI | TGTACA | 2 cut(s) | 1401, 1662 |
| BstC8I | GCNNGC | 4 cut(s) | 215, 505, 698, 1650 |
| BstDEI | CTNAG | 8 cut(s) | 520, 525, 729, 822, 1097, 1295, 1469, 1710 |
| BstDSI | CCRYGG | 3 cut(s) | 184, 543, 568 |
| BstEII | GGTNACC | 1 cut(s) | 708 |
| BstF5I | GGATG | 5 cut(s) | 111, 457, 748, 1363, 1630 |
| BstFNI | CGCG | 3 cut(s) | 467, 545, 674 |
| BstH2I | RGCGCY | 2 cut(s) | 822, 1717 |
| BstHHI | GCGC | 4 cut(s) | 768, 821, 1178, 1716 |
| BstKTI | GATC | 7 cut(s) | 6, 442, 672, 974, 1195, 1201, 1324 |
| BstMAI | GTCTC | 4 cut(s) | 53, 420, 470, 1071 |
| BstMBI | GATC | 7 cut(s) | 3, 439, 669, 971, 1192, 1198, 1321 |
| BstMCI | CGRYCG | 2 cut(s) | 615, 1486 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 214, 300, 342, 752, 1494, 1536 |
| BstNI | CCWGG | 1 cut(s) | 690 |
| BstNSI | RCATGY | 1 cut(s) | 217 |
| BstPI | GGTNACC | 1 cut(s) | 708 |
| BstSCI | CCNGG | 1 cut(s) | 688 |
| BstSFI | CTRYAG | 1 cut(s) | 1441 |
| BstUI | CGCG | 3 cut(s) | 467, 545, 674 |
| BstV1I | GCAGC | 6 cut(s) | 345, 496, 712, 1101, 1289, 1573 |
| BstV2I | GAAGAC | 3 cut(s) | 503, 800, 876 |
| BstX2I | RGATCY | 1 cut(s) | 439 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1700 |
| BstYI | RGATCY | 1 cut(s) | 439 |
| BstZI | CGGCCG | 1 cut(s) | 1483 |
| BsuRI | GGCC | 8 cut(s) | 71, 189, 202, 321, 414, 734, 1485, 1704 |
| BtgI | CCRYGG | 3 cut(s) | 184, 543, 568 |
| BtrI | CACGTC | 2 cut(s) | 480, 1083 |
| BtsCI | GGATG | 5 cut(s) | 111, 457, 748, 1363, 1630 |
| BtsIMutI | CAGTG | 2 cut(s) | 1094, 1652 |
| Cac8I | GCNNGC | 4 cut(s) | 215, 505, 698, 1650 |
| CciI | TCATGA | 1 cut(s) | 1491 |
| CfoI | GCGC | 4 cut(s) | 768, 821, 1178, 1716 |
| Cfr10I | RCCGGY | 2 cut(s) | 202, 1602 |
| Cfr13I | GGNCC | 4 cut(s) | 320, 413, 840, 1532 |
| Cfr42I | CCGCGG | 1 cut(s) | 546 |
| CseI | GACGC | 2 cut(s) | 334, 1042 |
| Csp6I | GTAC | 7 cut(s) | 239, 805, 1303, 1402, 1450, 1606, 1663 |
| CspAI | ACCGGT | 1 cut(s) | 1602 |
| CviQI | GTAC | 7 cut(s) | 239, 805, 1303, 1402, 1450, 1606, 1663 |
| DdeI | CTNAG | 8 cut(s) | 520, 525, 729, 822, 1097, 1295, 1469, 1710 |
| DpnI | GATC | 7 cut(s) | 5, 441, 671, 973, 1194, 1200, 1323 |
| DpnII | GATC | 7 cut(s) | 3, 439, 669, 971, 1192, 1198, 1321 |
| EaeI | YGGCCR | 4 cut(s) | 69, 200, 1483, 1702 |
| EagI | CGGCCG | 1 cut(s) | 1483 |
| Eam1104I | CTCTTC | 1 cut(s) | 1242 |
| EarI | CTCTTC | 1 cut(s) | 1242 |
| Ecl136II | GAGCTC | 2 cut(s) | 127, 898 |
| EclXI | CGGCCG | 1 cut(s) | 1483 |
| Eco130I | CCWWGG | 4 cut(s) | 184, 316, 323, 568 |
| Eco147I | AGGCCT | 1 cut(s) | 734 |
| Eco24I | GRGCYC | 2 cut(s) | 129, 900 |
| Eco47I | GGWCC | 2 cut(s) | 840, 1532 |
| Eco52I | CGGCCG | 1 cut(s) | 1483 |
| Eco53kI | GAGCTC | 2 cut(s) | 127, 898 |
| Eco57I | CTGAAG | 2 cut(s) | 339, 1293 |
| Eco88I | CYCGRG | 2 cut(s) | 446, 1457 |
| Eco91I | GGTNACC | 1 cut(s) | 708 |
| EcoICRI | GAGCTC | 2 cut(s) | 127, 898 |
| EcoO109I | RGGNCCY | 2 cut(s) | 320, 413 |
| EcoO65I | GGTNACC | 1 cut(s) | 708 |
| EcoRII | CCWGG | 1 cut(s) | 688 |
| EcoT14I | CCWWGG | 4 cut(s) | 184, 316, 323, 568 |
| EcoT38I | GRGCYC | 2 cut(s) | 129, 900 |
| ErhI | CCWWGG | 4 cut(s) | 184, 316, 323, 568 |
| Esp3I | CGTCTC | 1 cut(s) | 470 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 621, 653 |
| FauI | CCCGC | 2 cut(s) | 909, 1063 |
| FbaI | TGATCA | 1 cut(s) | 3 |
| FblI | GTMKAC | 1 cut(s) | 684 |
| Fnu4HI | GCNGC | 8 cut(s) | 292, 334, 485, 701, 1115, 1278, 1486, 1587 |
| FokI | GGATG | 5 cut(s) | 98, 464, 755, 1370, 1617 |
| FriOI | GRGCYC | 2 cut(s) | 129, 900 |
| Fsp4HI | GCNGC | 8 cut(s) | 292, 334, 485, 701, 1115, 1278, 1486, 1587 |
| FspBI | CTAG | 1 cut(s) | 504 |
| GlaI | GCGC | 4 cut(s) | 767, 820, 1177, 1715 |
| GluI | GCNGC | 8 cut(s) | 292, 334, 485, 701, 1115, 1278, 1486, 1587 |
| GsaI | CCCAGC | 1 cut(s) | 707 |
| HaeII | RGCGCY | 2 cut(s) | 822, 1717 |
| HaeIII | GGCC | 8 cut(s) | 71, 189, 202, 321, 414, 734, 1485, 1704 |
| HapII | CCGG | 8 cut(s) | 72, 203, 532, 1130, 1165, 1355, 1603, 1634 |
| HgaI | GACGC | 2 cut(s) | 334, 1042 |
| HhaI | GCGC | 4 cut(s) | 768, 821, 1178, 1716 |
| Hin1I | GRCGYC | 1 cut(s) | 873 |
| Hin6I | GCGC | 4 cut(s) | 766, 819, 1176, 1714 |
| HinP1I | GCGC | 4 cut(s) | 766, 819, 1176, 1714 |
| HincII | GTYRAC | 4 cut(s) | 648, 685, 984, 1057 |
| HindII | GTYRAC | 4 cut(s) | 648, 685, 984, 1057 |
| HinfI | GANTC | 5 cut(s) | 246, 548, 596, 1147, 1499 |
| HpaI | GTTAAC | 1 cut(s) | 984 |
| HpaII | CCGG | 8 cut(s) | 72, 203, 532, 1130, 1165, 1355, 1603, 1634 |
| HphI | GGTGA | 2 cut(s) | 31, 98 |
| Hpy166II | GTNNAC | 5 cut(s) | 648, 685, 856, 984, 1057 |
| Hpy8I | GTNNAC | 5 cut(s) | 648, 685, 856, 984, 1057 |
| Hpy99I | CGWCG | 2 cut(s) | 476, 1586 |
| HpyAV | CCTTC | 9 cut(s) | 24, 61, 113, 389, 1317, 1369, 1429, 1609, 1675 |
| HpyCH4III | ACNGT | 3 cut(s) | 433, 988, 1610 |
| HpyCH4IV | ACGT | 5 cut(s) | 305, 479, 873, 1082, 1347 |
| HpyCH4V | TGCA | 5 cut(s) | 666, 700, 746, 1277, 1443 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 214, 300, 342, 752, 1494, 1536 |
| HpyF3I | CTNAG | 8 cut(s) | 520, 525, 729, 822, 1097, 1295, 1469, 1710 |
| HpySE526I | ACGT | 5 cut(s) | 305, 479, 873, 1082, 1347 |
| Hsp92I | GRCGYC | 1 cut(s) | 873 |
| HspAI | GCGC | 4 cut(s) | 766, 819, 1176, 1714 |
| Kpn2I | TCCGGA | 2 cut(s) | 1129, 1354 |
| KpnI | GGTACC | 1 cut(s) | 1609 |
| Ksp22I | TGATCA | 1 cut(s) | 3 |
| KspAI | GTTAAC | 1 cut(s) | 984 |
| KspI | CCGCGG | 1 cut(s) | 546 |
| Kzo9I | GATC | 7 cut(s) | 3, 439, 669, 971, 1192, 1198, 1321 |
| LmnI | GCTCC | 5 cut(s) | 124, 373, 903, 1138, 1639 |
| Lsp1109I | GCAGC | 6 cut(s) | 345, 496, 712, 1101, 1289, 1573 |
| LweI | GCATC | 2 cut(s) | 516, 733 |
| MaeI | CTAG | 1 cut(s) | 504 |
| MaeII | ACGT | 5 cut(s) | 305, 479, 873, 1082, 1347 |
| MaeIII | GTNAC | 5 cut(s) | 365, 708, 772, 1214, 1684 |
| MalI | GATC | 7 cut(s) | 5, 441, 671, 973, 1194, 1200, 1323 |
| MboI | GATC | 7 cut(s) | 3, 439, 669, 971, 1192, 1198, 1321 |
| MflI | RGATCY | 1 cut(s) | 439 |
| MhlI | GDGCHC | 4 cut(s) | 129, 378, 900, 1143 |
| MlsI | TGGCCA | 1 cut(s) | 1704 |
| MluCI | AATT | 8 cut(s) | 400, 759, 909, 925, 1034, 1206, 1511, 1721 |
| MluNI | TGGCCA | 1 cut(s) | 1704 |
| MlyI | GAGTC | 3 cut(s) | 240, 590, 1508 |
| Mox20I | TGGCCA | 1 cut(s) | 1704 |
| MroI | TCCGGA | 2 cut(s) | 1129, 1354 |
| MscI | TGGCCA | 1 cut(s) | 1704 |
| MseI | TTAA | 3 cut(s) | 809, 983, 1209 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1664 |
| Msp20I | TGGCCA | 1 cut(s) | 1704 |
| MspA1I | CMGCKG | 2 cut(s) | 545, 703 |
| MspI | CCGG | 8 cut(s) | 72, 203, 532, 1130, 1165, 1355, 1603, 1634 |
| MspR9I | CCNGG | 1 cut(s) | 690 |
| MvaI | CCWGG | 1 cut(s) | 690 |
| MvnI | CGCG | 3 cut(s) | 467, 545, 674 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 214, 300, 342, 752, 1494, 1536 |
| NcoI | CCATGG | 2 cut(s) | 184, 568 |
| NdeII | GATC | 7 cut(s) | 3, 439, 669, 971, 1192, 1198, 1321 |
| NheI | GCTAGC | 1 cut(s) | 503 |
| NlaIV | GGNNCC | 2 cut(s) | 1607, 1641 |
| NmuCI | GTSAC | 3 cut(s) | 772, 1214, 1684 |
| NspI | RCATGY | 1 cut(s) | 217 |
| PaeI | GCATGC | 1 cut(s) | 217 |
| PagI | TCATGA | 1 cut(s) | 1491 |
| PceI | AGGCCT | 1 cut(s) | 734 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 471 |
| PfeI | GAWTC | 2 cut(s) | 548, 1147 |
| PinAI | ACCGGT | 1 cut(s) | 1602 |
| PkrI | GCNGC | 8 cut(s) | 293, 335, 486, 702, 1116, 1279, 1487, 1588 |
| PleI | GAGTC | 3 cut(s) | 240, 590, 1507 |
| PpsI | GAGTC | 3 cut(s) | 240, 590, 1507 |
| Psp124BI | GAGCTC | 2 cut(s) | 129, 900 |
| Psp6I | CCWGG | 1 cut(s) | 688 |
| PspEI | GGTNACC | 1 cut(s) | 708 |
| PspFI | CCCAGC | 1 cut(s) | 703 |
| PspGI | CCWGG | 1 cut(s) | 688 |
| PspN4I | GGNNCC | 2 cut(s) | 1607, 1641 |
| PspPI | GGNCC | 4 cut(s) | 320, 413, 840, 1532 |
| PstI | CTGCAG | 1 cut(s) | 1445 |
| PsuI | RGATCY | 1 cut(s) | 439 |
| PvuII | CAGCTG | 1 cut(s) | 703 |
| RsaI | GTAC | 7 cut(s) | 240, 806, 1304, 1403, 1451, 1607, 1664 |
| RsaNI | GTAC | 7 cut(s) | 239, 805, 1303, 1402, 1450, 1606, 1663 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1664 |
| SacI | GAGCTC | 2 cut(s) | 129, 900 |
| SacII | CCGCGG | 1 cut(s) | 546 |
| SalI | GTCGAC | 1 cut(s) | 683 |
| SaqAI | TTAA | 3 cut(s) | 809, 983, 1209 |
| SatI | GCNGC | 8 cut(s) | 292, 334, 485, 701, 1115, 1278, 1486, 1587 |
| Sau3AI | GATC | 7 cut(s) | 3, 439, 669, 971, 1192, 1198, 1321 |
| Sau96I | GGNCC | 4 cut(s) | 320, 413, 840, 1532 |
| SchI | GAGTC | 3 cut(s) | 240, 590, 1508 |
| ScrFI | CCNGG | 1 cut(s) | 690 |
| SduI | GDGCHC | 4 cut(s) | 129, 378, 900, 1143 |
| SfaNI | GCATC | 2 cut(s) | 516, 733 |
| SfcI | CTRYAG | 1 cut(s) | 1441 |
| Sfr303I | CCGCGG | 1 cut(s) | 546 |
| SgrBI | CCGCGG | 1 cut(s) | 546 |
| SinI | GGWCC | 2 cut(s) | 840, 1532 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1664 |
| SmlI | CTYRAG | 2 cut(s) | 383, 1039 |
| SmoI | CTYRAG | 2 cut(s) | 383, 1039 |
| SphI | GCATGC | 1 cut(s) | 217 |
| Sse9I | AATT | 8 cut(s) | 400, 759, 909, 925, 1034, 1206, 1511, 1721 |
| SseBI | AGGCCT | 1 cut(s) | 734 |
| SspI | AATATT | 1 cut(s) | 1368 |
| SspMI | CTAG | 1 cut(s) | 504 |
| SstI | GAGCTC | 2 cut(s) | 129, 900 |
| StuI | AGGCCT | 1 cut(s) | 734 |
| StyD4I | CCNGG | 1 cut(s) | 688 |
| StyI | CCWWGG | 4 cut(s) | 184, 316, 323, 568 |
| TaaI | ACNGT | 3 cut(s) | 433, 988, 1610 |
| TaiI | ACGT | 5 cut(s) | 308, 482, 876, 1085, 1350 |
| TaqI | TCGA | 6 cut(s) | 436, 510, 611, 621, 684, 1623 |
| TasI | AATT | 8 cut(s) | 400, 759, 909, 925, 1034, 1206, 1511, 1721 |
| TatI | WGTACW | 3 cut(s) | 1401, 1449, 1662 |
| TauI | GCSGC | 2 cut(s) | 294, 1488 |
| TfiI | GAWTC | 2 cut(s) | 548, 1147 |
| Tru1I | TTAA | 3 cut(s) | 809, 983, 1209 |
| Tru9I | TTAA | 3 cut(s) | 809, 983, 1209 |
| TscAI | CASTG | 2 cut(s) | 1101, 1659 |
| TseFI | GTSAC | 3 cut(s) | 772, 1214, 1684 |
| TseI | GCWGC | 6 cut(s) | 333, 484, 700, 1114, 1277, 1586 |
| Tsp45I | GTSAC | 3 cut(s) | 772, 1214, 1684 |
| TspDTI | ATGAA | 8 cut(s) | 139, 1051, 1109, 1239, 1262, 1480, 1589, 1682 |
| TspGWI | ACGGA | 1 cut(s) | 764 |
| TspRI | CASTG | 2 cut(s) | 1101, 1659 |
| VpaK11BI | GGWCC | 2 cut(s) | 840, 1532 |
| XapI | RAATTY | 2 cut(s) | 1034, 1511 |
| XceI | RCATGY | 1 cut(s) | 217 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 786, 850 |
| XmiI | GTMKAC | 1 cut(s) | 684 |
| XspI | CTAG | 1 cut(s) | 504 |
| ZraI | GACGTC | 1 cut(s) | 874 |