AT5G09420

translocon at the outer membrane of chloroplasts 64-v

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
2928173 .. 2932021
3849 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G09420.1

Sequence Viewer

Length: 1812 bp
ATGTCGAATACGCTTTCTTTGATTCAAAGCAATGCCTCGAATCCCAAAGTTTGGGTAGTGATCGGCGTGACGGTGGCCGGGATCGTGATTCTGGCGGAGACCCGGAAGCGGCGGATTAGAGCCCTTAGAGAAGAAGACTTTGGTGCTTTCTTAGATCGTTTCGAGCTTCTTCCTTTCCCTCCGCCTCCTCCTCCTGCTGCTAAACAATCTCTCTCTGGTCTTACCTTCTCCATCTCCGACGCGTTCGATGTTAAGGATTATATCACAGGATTTGGTTGTCCACAATGGAAGAAGACTCATGAGGCTGCTGAGAAAACTGCTGTGGTTGTCACGACGCTCTTGAAAAATGGAGCTACTTGTGTTGGCAAGACTATAATGGATGAGCTGGGTTTTGGGATTATTGGAGAAAACAAGCACTATGGAACTCCTATTAATCCATTGATGCCAGATAATGTTCCTGGAGGATGTTCCAGTGGCTCAGCAGTTTCTGTTGGGGCTGAACTCGTTGACTTTTCACTTGGGATTGATACCACTGGTGGTGTTAGAGTCCCAGCAGCCTTTTGTGGTATTCTTGGTTTTCGACCATCTCAGGGGACTGTTTCTTCAGTTGGAGTTTTGCCCAATTCTCAGAGCCTAGAGACTGTTGGATGGTTTGCCTCTGATCCATCCGTTTTGTGTCAAGTTGGACATGCCTTACTAAATCTGAGTGCAGTAACACATAGAAGGCAAAGATCTTTAATCTTTGCTGATGATTTATTCGAGCTCTCTGACATTCCTAAGCAAAAGTCGGTGCAAGTTGTCAGAAAGGCAATCGAGAATCTATCTGGCTACAAGACTCCAAAACATGTTAACGTTGGCCAATATGTCGCTTCAAATGTACCAAGTCTTGCGGAATTCTGTGAGCAATCTGGGAAATCCCAAAATTCAGCATCAACTTTAAGGGCTCTTTCATCTGTGATGTTGGCTATACAAAGGCATGAGTTCAAAACAAATCATGAAGAATGGTGGCAAACATGCAAATCGTTTCTAGGGCCAAGATTTTCCAATGATGTTGTTACAGCTCTGAAGAGCAAAAACGAGAGCATTAAATCCCTCTACAGAGTGAAAAATGAGATGCGGGCCACCATTCAAAGCCTTTTAAAGGAAGATGGAATTCTGGTAATCCCCACAGTTGCTGATCCCCCTCCAAGGCTTAACACAAAGAGAAATAAATCTTTGAATGAGTTTCTTGATCGTACTTATGCACTCTCCTGCATTGCAAGCATGTCTGGATGTTGTCAGGTTACAATTCCTTTAGGGGAACATGGTGATCGTCCAATATCCGTGTCGCTTCTTACTTACTATGGAGGTGATAAGTTCCTTCTCGATACAACTCTCGATGTATATGCATCCCTTCAAGACCAAGCCAAACTTGCATCCAACTTAGCTCCAGTGTCTGACACCAATGGTAACATGGAGGCTTCTGAAGTTATGAAAGAAAAGGGCAATGCTGCATACAAGGGGAAACAATGGAATAAGGCGGTAAACTTTTATACAGAAGCTATAAAATTGAATGGAGCAAATGCTACTTATTATTGCAATAGAGCTGCAGCTTTCTTGGAACTTTGCTGCTTCCAACAAGCCGAACAAGATTGTACCAAGGCCATGTTGATCGATAAGAAGAATGTGAAGGCATATTTGAGACGAGGGACTGCTAGAGAATCACTTGTACGGTACAAGGAAGCTGCTGCAGATTTCAGGCACGCATTGGTCCTTGAACCACAGAACAAGACGGCAAAGGTTGCTGAGAAGAGACTCCGAAAACACATATGA

Protein Analysis

603

Amino Acids

65.91

Weight (kDa)

8.99

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amidase PF01425 68 - 455 5.8e-49 Amidase
TPR_11 PF13414 495 - 534 8.2e-06 TPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019611)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09420
malus_domestica MD05G1044300.v1.1 MD10G1051400.v1.1
prunus_persica Prupe.8G059900_v2.0.a1 Prupe.8G059900_v2.0.a1
pyrus_communis pycom05g03700 pycom10g03620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 51
AccII CGCG 1 cut(s) 242
AciI CCGC 7 cut(s) 95, 109, 112, 182, 890, 1117, 1520
AclI AACGTT 1 cut(s) 852
AclWI GGATC 3 cut(s) 89, 656, 1172
AcoI YGGCCR 2 cut(s) 75, 856
AcsI RAATTY 3 cut(s) 893, 922, 1152
AcuI CTGAAG 3 cut(s) 588, 1085, 1485
AfaI GTAC 5 cut(s) 879, 1237, 1636, 1710, 1715
AfiI CCNNNNNNNGG 5 cut(s) 51, 108, 590, 1141, 1188
AflIII ACRYGT 2 cut(s) 240, 844
AgsI TTSAA 9 cut(s) 26, 343, 873, 985, 1130, 1219, 1397, 1552, 1757
AjnI CCWGG 1 cut(s) 457
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
Alw21I GWGCWC 1 cut(s) 765
Alw26I GTCTC 4 cut(s) 92, 632, 1675, 1786
AlwI GGATC 3 cut(s) 89, 656, 1172
AlwNI CAGNNNCTG 3 cut(s) 488, 1175, 1436
AoxI GGCC 5 cut(s) 75, 856, 1031, 1119, 1641
ApeKI GCWGC 9 cut(s) 197, 305, 554, 1490, 1586, 1589, 1608, 1724, 1727
ApoI RAATTY 3 cut(s) 893, 922, 1152
AseI ATTAAT 1 cut(s) 432
AspS9I GGNCC 3 cut(s) 1031, 1119, 1750
AsuC2I CCSGG 2 cut(s) 79, 103
AsuHPI GGTGA 2 cut(s) 1319, 1361
AvaII GGWCC 1 cut(s) 1750
BalI TGGCCA 1 cut(s) 858
BanII GRGCYC 3 cut(s) 124, 765, 946
BbsI GAAGAC 2 cut(s) 141, 299
Bbv12I GWGCWC 1 cut(s) 765
BbvI GCAGC 9 cut(s) 184, 292, 566, 1477, 1573, 1595, 1601, 1711, 1714
BccI CCATC 5 cut(s) 239, 592, 642, 673, 1142
BceAI ACGGC 1 cut(s) 1788
BcgI CGANNNNNNTGC 2 cut(s) 1367, 1401
BciT130I CCWGG 1 cut(s) 459
BcnI CCSGG 2 cut(s) 79, 103
BcoDI GTCTC 4 cut(s) 92, 632, 1675, 1786
BfaI CTAG 3 cut(s) 635, 1028, 1695
BfmI CTRYAG 3 cut(s) 1096, 1587, 1728
BglII AGATCT 1 cut(s) 731
BlpI GCTNAGC 1 cut(s) 478
Bme1390I CCNGG 3 cut(s) 79, 103, 459
Bme18I GGWCC 1 cut(s) 1750
BmgT120I GGNCC 3 cut(s) 1031, 1119, 1750
BmrFI CCNGG 3 cut(s) 79, 103, 459
BmsI GCATC 5 cut(s) 432, 938, 1104, 1397, 1424
BpiI GAAGAC 2 cut(s) 141, 299
BpmI CTGGAG 2 cut(s) 480, 1413
Bpu10I CCTNAGC 1 cut(s) 777
Bpu1102I GCTNAGC 1 cut(s) 478
BpuMI CCSGG 2 cut(s) 79, 103
Bsa29I ATCGAT 1 cut(s) 1653
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 1187, 1638
Bsc4I CCNNNNNNNGG 5 cut(s) 51, 108, 590, 1141, 1188
Bse1I ACTGG 3 cut(s) 471, 538, 1430
Bse3DI GCAATG 3 cut(s) 37, 1254, 1492
BseBI CCWGG 1 cut(s) 459
BseCI ATCGAT 1 cut(s) 1653
BseDI CCNNGG 2 cut(s) 1187, 1638
BseGI GGATG 7 cut(s) 385, 470, 653, 665, 1277, 1388, 1415
BseLI CCNNNNNNNGG 5 cut(s) 51, 108, 590, 1141, 1188
BseMI GCAATG 3 cut(s) 37, 1254, 1492
BseMII CTCAG 6 cut(s) 300, 492, 602, 641, 695, 1776
BseNI ACTGG 3 cut(s) 471, 538, 1430
BseRI GAGGAG 2 cut(s) 177, 180
BseXI GCAGC 9 cut(s) 184, 292, 566, 1477, 1573, 1595, 1601, 1711, 1714
BseYI CCCAGC 2 cut(s) 385, 550
BsgI GTGCAG 1 cut(s) 729
Bsh1236I CGCG 1 cut(s) 242
BshFI GGCC 5 cut(s) 77, 858, 1033, 1121, 1643
BshVI ATCGAT 1 cut(s) 1653
BsiHKAI GWGCWC 1 cut(s) 765
BsiSI CCGG 2 cut(s) 78, 103
BslFI GGGAC 3 cut(s) 533, 607, 1702
BslI CCNNNNNNNGG 5 cut(s) 51, 108, 590, 1141, 1188
BsmAI GTCTC 4 cut(s) 92, 632, 1675, 1786
BsmBI CGTCTC 1 cut(s) 1675
BsmFI GGGAC 3 cut(s) 533, 607, 1702
BsnI GGCC 5 cut(s) 77, 858, 1033, 1121, 1643
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 3 cut(s) 124, 765, 946
Bsp143I GATC 9 cut(s) 60, 81, 154, 661, 731, 1177, 1231, 1309, 1650
Bsp1720I GCTNAGC 1 cut(s) 478
BspACI CCGC 7 cut(s) 95, 109, 112, 182, 890, 1117, 1520
BspANI GGCC 5 cut(s) 77, 858, 1033, 1121, 1643
BspCNI CTCAG 6 cut(s) 301, 491, 601, 640, 696, 1777
BspDI ATCGAT 1 cut(s) 1653
BspFNI CGCG 1 cut(s) 242
BspHI TCATGA 2 cut(s) 298, 994
BspMAI CTGCAG 2 cut(s) 1591, 1732
BspPI GGATC 3 cut(s) 89, 656, 1172
BspQI GCTCTTC 1 cut(s) 1061
BspTNI GGTCTC 1 cut(s) 92
BsrDI GCAATG 3 cut(s) 37, 1254, 1492
BsrI ACTGG 3 cut(s) 471, 538, 1430
BssECI CCNNGG 2 cut(s) 1187, 1638
BssMI GATC 9 cut(s) 60, 81, 154, 661, 731, 1177, 1231, 1309, 1650
BssT1I CCWWGG 2 cut(s) 1187, 1638
Bst2UI CCWGG 1 cut(s) 459
Bst4CI ACNGT 5 cut(s) 73, 598, 643, 1171, 1713
Bst6I CTCTTC 2 cut(s) 1061, 1784
BstAPI GCANNNNNTGC 1 cut(s) 1781
BstC8I GCNNGC 3 cut(s) 1119, 1261, 1743
BstENI CCTNNNNNAGG 1 cut(s) 1139
BstF5I GGATG 7 cut(s) 385, 470, 653, 665, 1277, 1388, 1415
BstFNI CGCG 1 cut(s) 242
BstKTI GATC 9 cut(s) 63, 84, 157, 664, 734, 1180, 1234, 1312, 1653
BstMAI GTCTC 4 cut(s) 92, 632, 1675, 1786
BstMBI GATC 9 cut(s) 60, 81, 154, 661, 731, 1177, 1231, 1309, 1650
BstMWI GCNNNNNNNGC 3 cut(s) 1260, 1412, 1781
BstNI CCWGG 1 cut(s) 459
BstNSI RCATGY 4 cut(s) 692, 848, 1017, 1267
BstSCI CCNGG 3 cut(s) 77, 101, 457
BstSFI CTRYAG 3 cut(s) 1096, 1587, 1728
BstUI CGCG 1 cut(s) 242
BstV1I GCAGC 9 cut(s) 184, 292, 566, 1477, 1573, 1595, 1601, 1711, 1714
BstV2I GAAGAC 2 cut(s) 141, 299
BstX2I RGATCY 1 cut(s) 731
BstYI RGATCY 1 cut(s) 731
Bsu15I ATCGAT 1 cut(s) 1653
BsuRI GGCC 5 cut(s) 77, 858, 1033, 1121, 1643
BsuTUI ATCGAT 1 cut(s) 1653
BtsCI GGATG 7 cut(s) 385, 470, 653, 665, 1277, 1388, 1415
BtsIMutI CAGTG 3 cut(s) 478, 531, 1437
Cac8I GCNNGC 3 cut(s) 1119, 1261, 1743
CaiI CAGNNNCTG 3 cut(s) 488, 1175, 1436
CciI TCATGA 2 cut(s) 298, 994
Cfr13I GGNCC 3 cut(s) 1031, 1119, 1750
ClaI ATCGAT 1 cut(s) 1653
CseI GACGC 2 cut(s) 248, 343
Csp6I GTAC 5 cut(s) 878, 1236, 1635, 1709, 1714
CviQI GTAC 5 cut(s) 878, 1236, 1635, 1709, 1714
DpnI GATC 9 cut(s) 62, 83, 156, 663, 733, 1179, 1233, 1311, 1652
DpnII GATC 9 cut(s) 60, 81, 154, 661, 731, 1177, 1231, 1309, 1650
DraI TTTAAA 1 cut(s) 1140
EaeI YGGCCR 2 cut(s) 75, 856
Eam1104I CTCTTC 2 cut(s) 1061, 1784
EarI CTCTTC 2 cut(s) 1061, 1784
EciI GGCGGA 3 cut(s) 110, 127, 171
Ecl136II GAGCTC 1 cut(s) 763
Eco130I CCWWGG 2 cut(s) 1187, 1638
Eco24I GRGCYC 3 cut(s) 124, 765, 946
Eco31I GGTCTC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 1750
Eco53kI GAGCTC 1 cut(s) 763
Eco57I CTGAAG 3 cut(s) 588, 1085, 1485
EcoICRI GAGCTC 1 cut(s) 763
EcoNI CCTNNNNNAGG 1 cut(s) 1139
EcoRI GAATTC 2 cut(s) 893, 1152
EcoRII CCWGG 1 cut(s) 457
EcoT14I CCWWGG 2 cut(s) 1187, 1638
EcoT22I ATGCAT 1 cut(s) 1390
EcoT38I GRGCYC 3 cut(s) 124, 765, 946
ErhI CCWWGG 2 cut(s) 1187, 1638
Esp3I CGTCTC 1 cut(s) 1675
FalI AAGNNNNNCTT 2 cut(s) 1395, 1427
FaqI GGGAC 3 cut(s) 533, 607, 1702
FauI CCCGC 1 cut(s) 1110
FauNDI CATATG 1 cut(s) 1808
FokI GGATG 7 cut(s) 392, 477, 652, 660, 1284, 1375, 1402
FriOI GRGCYC 3 cut(s) 124, 765, 946
FspBI CTAG 3 cut(s) 635, 1028, 1695
GsaI CCCAGC 2 cut(s) 389, 554
GsuI CTGGAG 2 cut(s) 480, 1413
HaeIII GGCC 5 cut(s) 77, 858, 1033, 1121, 1643
HapII CCGG 2 cut(s) 78, 103
HgaI GACGC 2 cut(s) 248, 343
HincII GTYRAC 2 cut(s) 508, 850
HindII GTYRAC 2 cut(s) 508, 850
HinfI GANTC 9 cut(s) 22, 40, 88, 295, 546, 817, 835, 1700, 1794
HpaI GTTAAC 1 cut(s) 850
HpaII CCGG 2 cut(s) 78, 103
HphI GGTGA 2 cut(s) 1319, 1361
Hpy166II GTNNAC 4 cut(s) 281, 508, 850, 1525
Hpy8I GTNNAC 4 cut(s) 281, 508, 850, 1525
Hpy99I CGWCG 2 cut(s) 242, 337
HpyAV CCTTC 5 cut(s) 235, 717, 1370, 1403, 1663
HpyCH4III ACNGT 5 cut(s) 73, 598, 643, 1171, 1713
HpyCH4IV ACGT 1 cut(s) 852
HpyF10VI GCNNNNNNNGC 3 cut(s) 1260, 1412, 1781
HpySE526I ACGT 1 cut(s) 852
KspAI GTTAAC 1 cut(s) 850
Kzo9I GATC 9 cut(s) 60, 81, 154, 661, 731, 1177, 1231, 1309, 1650
LguI GCTCTTC 1 cut(s) 1061
LmnI GCTCC 3 cut(s) 350, 1432, 1556
Lsp1109I GCAGC 9 cut(s) 184, 292, 566, 1477, 1573, 1595, 1601, 1711, 1714
LweI GCATC 5 cut(s) 432, 938, 1104, 1397, 1424
MaeI CTAG 3 cut(s) 635, 1028, 1695
MaeII ACGT 1 cut(s) 852
MaeIII GTNAC 6 cut(s) 67, 328, 712, 1054, 1282, 1448
MalI GATC 9 cut(s) 62, 83, 156, 663, 733, 1179, 1233, 1311, 1652
MboI GATC 9 cut(s) 60, 81, 154, 661, 731, 1177, 1231, 1309, 1650
MflI RGATCY 1 cut(s) 731
MhlI GDGCHC 3 cut(s) 124, 765, 946
MlsI TGGCCA 1 cut(s) 858
MluCI AATT 6 cut(s) 622, 893, 922, 1152, 1287, 1547
MluI ACGCGT 1 cut(s) 240
MluNI TGGCCA 1 cut(s) 858
MlyI GAGTC 4 cut(s) 289, 555, 829, 1788
MmeI TCCRAC 6 cut(s) 261, 589, 625, 664, 1443, 1639
Mox20I TGGCCA 1 cut(s) 858
Mph1103I ATGCAT 1 cut(s) 1390
MscI TGGCCA 1 cut(s) 858
MseI TTAA 8 cut(s) 252, 432, 737, 849, 938, 1086, 1139, 1194
Msp20I TGGCCA 1 cut(s) 858
MspI CCGG 2 cut(s) 78, 103
MspR9I CCNGG 3 cut(s) 79, 103, 459
MvaI CCWGG 1 cut(s) 459
MvnI CGCG 1 cut(s) 242
MwoI GCNNNNNNNGC 3 cut(s) 1260, 1412, 1781
NciI CCSGG 2 cut(s) 79, 103
NdeI CATATG 1 cut(s) 1808
NdeII GATC 9 cut(s) 60, 81, 154, 661, 731, 1177, 1231, 1309, 1650
NmuCI GTSAC 2 cut(s) 67, 328
NsiI ATGCAT 1 cut(s) 1390
NspI RCATGY 4 cut(s) 692, 848, 1017, 1267
PagI TCATGA 2 cut(s) 298, 994
PciI ACATGT 1 cut(s) 844
PciSI GCTCTTC 1 cut(s) 1061
PfeI GAWTC 5 cut(s) 22, 40, 88, 817, 1700
PflMI CCANNNNNTGG 1 cut(s) 51
PfoI TCCNGGA 1 cut(s) 457
PleI GAGTC 4 cut(s) 289, 554, 829, 1788
PpsI GAGTC 4 cut(s) 289, 554, 829, 1788
PscI ACATGT 1 cut(s) 844
PshBI ATTAAT 1 cut(s) 432
Psp124BI GAGCTC 1 cut(s) 765
Psp1406I AACGTT 1 cut(s) 852
Psp6I CCWGG 1 cut(s) 457
PspFI CCCAGC 2 cut(s) 385, 550
PspGI CCWGG 1 cut(s) 457
PspPI GGNCC 3 cut(s) 1031, 1119, 1750
PstI CTGCAG 2 cut(s) 1591, 1732
PstNI CAGNNNCTG 3 cut(s) 488, 1175, 1436
PsuI RGATCY 1 cut(s) 731
RsaI GTAC 5 cut(s) 879, 1237, 1636, 1710, 1715
RsaNI GTAC 5 cut(s) 878, 1236, 1635, 1709, 1714
SacI GAGCTC 1 cut(s) 765
SapI GCTCTTC 1 cut(s) 1061
SaqAI TTAA 8 cut(s) 252, 432, 737, 849, 938, 1086, 1139, 1194
Sau3AI GATC 9 cut(s) 60, 81, 154, 661, 731, 1177, 1231, 1309, 1650
Sau96I GGNCC 3 cut(s) 1031, 1119, 1750
SchI GAGTC 4 cut(s) 289, 555, 829, 1788
ScrFI CCNGG 3 cut(s) 79, 103, 459
SduI GDGCHC 3 cut(s) 124, 765, 946
SfaNI GCATC 5 cut(s) 432, 938, 1104, 1397, 1424
SfcI CTRYAG 3 cut(s) 1096, 1587, 1728
SinI GGWCC 1 cut(s) 1750
Sse9I AATT 6 cut(s) 622, 893, 922, 1152, 1287, 1547
SsiI CCGC 7 cut(s) 95, 109, 112, 182, 890, 1117, 1520
SspMI CTAG 3 cut(s) 635, 1028, 1695
SstI GAGCTC 1 cut(s) 765
StyD4I CCNGG 3 cut(s) 77, 101, 457
StyI CCWWGG 2 cut(s) 1187, 1638
TaaI ACNGT 5 cut(s) 73, 598, 643, 1171, 1713
TaiI ACGT 1 cut(s) 855
TasI AATT 6 cut(s) 622, 893, 922, 1152, 1287, 1547
TauI GCSGC 1 cut(s) 112
TfiI GAWTC 5 cut(s) 22, 40, 88, 817, 1700
Tru1I TTAA 8 cut(s) 252, 432, 737, 849, 938, 1086, 1139, 1194
Tru9I TTAA 8 cut(s) 252, 432, 737, 849, 938, 1086, 1139, 1194
TscAI CASTG 3 cut(s) 478, 538, 1437
TseFI GTSAC 2 cut(s) 67, 328
TseI GCWGC 9 cut(s) 197, 305, 554, 1490, 1586, 1589, 1608, 1724, 1727
Tsp45I GTSAC 2 cut(s) 67, 328
TspDTI ATGAA 3 cut(s) 939, 1011, 1487
TspGWI ACGGA 2 cut(s) 658, 1312
TspRI CASTG 3 cut(s) 478, 538, 1437
Van91I CCANNNNNTGG 1 cut(s) 51
VpaK11BI GGWCC 1 cut(s) 1750
VspI ATTAAT 1 cut(s) 432
XagI CCTNNNNNAGG 1 cut(s) 1139
XapI RAATTY 3 cut(s) 893, 922, 1152
XceI RCATGY 4 cut(s) 692, 848, 1017, 1267
XcmI CCANNNNNNNNNTGG 1 cut(s) 1450
XspI CTAG 3 cut(s) 635, 1028, 1695
Zsp2I ATGCAT 1 cut(s) 1390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.