Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0019611

Physical Location & Seq

Genomic Coordinates Reverse (-)

4218138 .. 4223032

Gene Structure 4895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g03700.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGCTTGGAGTTTTGCCAAATTCACAGAGTTTAGACGCTGTTGGAATTTTTGCCTGCGATCCATCTATTCTACATCGTGTTGGACATGTTTTGCTTCAACTGAATTCTGTGGAACCTAAAAGGGCGAGACGCCTTATTTTTGCTGATGATCTCTTTCAGCTTCCTAAAATTCCTACTGAGAAGACAGTACATGTTGTCAGCAAAGCAATTGAACATCTATCTGGGTACCAACCTCCAAAGCATATGAATTTTAGTCAGTATATTGCTTCAAATGTACCCAGTTTAAAAGCATTTCGTGAAGAATCCACAAAACATCAAAATGGAGTATTTACTTTGAAAGCTCTCTCTTCTGTGATGCTTTTGATACAGAGTTGTGAATTCAAAACCAATCATGAAGAATGGGTTAAATCAGCGAAACCAAAGCTAGGGCCAGATGTATCAGATCGAGTTCGTGCAGCAATTAACTCTACAAATGAAAACATGAAAACCCTATATAAAGTAAGGACTGAGATGAGAGCTGCCCTTCAAAGTCTTTTAAAGGATGATGGAATATTAGTGATTCCAACAATCGCAGATCGATCATTAAAGCTGAATACAAAGAAAGGGGGGTCATCTGAGTTTAATGATAGAACATTAGCATTAACAAGCATTGCCAGCATGTCTGGGTGCTGTCAGGTTACAGTACCAGTGGGAAAGCACAATGACTGCCCCATCTCTGTGTCATTCATCGCGTTCCATGGTGTAGATAAATTTCTCCTTGATACAGTCTTGGATATGTACTCTTCAGTTCAGGAGAAGGTCAGCATTGCATCCCATTCGTTGCCATTGCCAGATACCAATGGGAACATGGATGCTTCAGAACTCTTAAAAGAGAAGGGAAATGCTGCATTTAAGGGAAGGCAATGGAATAAGGCTGTCAACTATTATACTGAAGCTATCAAATTGAACATGATGAGCACAACTTACTACTCCAACCGCGCAGCTGCTTACTTGGAGTTGGGGTGCTTCCAGCAAGCTGAAGAGGACTGCAGCAAGGCAATATCACTTGACAAAAAGAATGTGAAGGCATATCTTAGGCGTGGAACAGCTAGAGAATCACTTCTTTGTTATAAGGAGGCTGCTCAAGATTTCAAGCATGCCCTTGTTCTTGAACCTCAAAATAAGGTTGCCAGTCTTGCTGAAAAAAGACTAAGGAAACTGCTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655

KEGG Pathways

Metabolic & Signaling

ko00330 ko00360 ko00380 ko00627 ko00643 ko01120 map00330 map00360 map00380 map00627 map00643 map01120

Pfam Domains

Protein Families

Amidase TPR_1 TPR_11

Protein Analysis

403

Amino Acids

44.68

Weight (kDa)

9.19

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09420
malus_domestica	MD05G1044300.v1.1 MD10G1051400.v1.1
prunus_persica	Prupe.8G059900_v2.0.a1 Prupe.8G059900_v2.0.a1
pyrus_communis	pycom05g03700 pycom10g03620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1110
Acc65I	GGTACC	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	225
AccII	CGCG	2 cut(s)	731, 978
AciI	CCGC	1 cut(s)	976
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	7 cut(s)	19, 45, 103, 168, 247, 377, 749
AcuI	CTGAAG	4 cut(s)	768, 840, 951, 1038
AcyI	GRCGYC	1 cut(s)	130
AfaI	GTAC	5 cut(s)	189, 227, 276, 684, 779
AfiI	CCNNNNNNNGG	1 cut(s)	425
AflIII	ACRYGT	2 cut(s)	85, 190
AgsI	TTSAA	9 cut(s)	98, 212, 270, 337, 382, 527, 946, 1132, 1151
AluBI	AGCT	9 cut(s)	160, 341, 424, 518, 589, 935, 983, 1016, 1088
AluI	AGCT	9 cut(s)	160, 341, 424, 518, 589, 935, 983, 1016, 1088
Alw21I	GWGCWC	1 cut(s)	959
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	53
AoxI	GGCC	1 cut(s)	428
ApeKI	GCWGC	7 cut(s)	455, 518, 884, 980, 983, 1029, 1118
ApoI	RAATTY	7 cut(s)	19, 45, 103, 168, 247, 377, 749
Asp700I	GAANNNNTTC	1 cut(s)	1098
Asp718I	GGTACC	1 cut(s)	225
AspLEI	GCGC	1 cut(s)	980
AspS9I	GGNCC	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	959
BbvI	GCAGC	7 cut(s)	467, 505, 871, 970, 992, 1041, 1105
BccI	CCATC	3 cut(s)	70, 539, 719
BcgI	CGANNNNNNTGC	2 cut(s)	798, 832
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	2 cut(s)	425, 1089
BfmI	CTRYAG	1 cut(s)	1027
BisI	GCNGC	7 cut(s)	456, 519, 885, 981, 984, 1030, 1119
BlsI	GCNGC	7 cut(s)	457, 520, 886, 982, 985, 1031, 1120
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	2 cut(s)	114, 227
BmrI	ACTGGG	1 cut(s)	273
BmsI	GCATC	3 cut(s)	345, 818, 841
BmuI	ACTGGG	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	1107
Bsa29I	ATCGAT	1 cut(s)	577
BsaHI	GRCGYC	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	736
BsaXI	ACNNNNNCTCC	2 cut(s)	986, 1016
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse1I	ACTGG	3 cut(s)	279, 686, 1170
Bse3DI	GCAATG	4 cut(s)	648, 804, 824, 908
BseCI	ATCGAT	1 cut(s)	577
BseDI	CCNNGG	1 cut(s)	736
BseGI	GGATG	3 cut(s)	547, 809, 856
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMI	GCAATG	4 cut(s)	648, 804, 824, 908
BseMII	CTCAG	4 cut(s)	168, 498, 606, 1193
BseNI	ACTGG	3 cut(s)	279, 686, 1170
BseXI	GCAGC	7 cut(s)	467, 505, 871, 970, 992, 1041, 1105
BsgI	GTGCAG	1 cut(s)	474
Bsh1236I	CGCG	2 cut(s)	731, 978
BshFI	GGCC	1 cut(s)	430
BshNI	GGYRCC	1 cut(s)	225
BshVI	ATCGAT	1 cut(s)	577
BsiHKAI	GWGCWC	1 cut(s)	959
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmAI	GTCTC	1 cut(s)	121
BsmBI	CGTCTC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	959
Bsp143I	GATC	5 cut(s)	58, 148, 442, 574, 578
Bsp19I	CCATGG	1 cut(s)	736
BspACI	CCGC	1 cut(s)	976
BspANI	GGCC	1 cut(s)	430
BspCNI	CTCAG	4 cut(s)	169, 499, 607, 1194
BspDI	ATCGAT	1 cut(s)	577
BspFNI	CGCG	2 cut(s)	731, 978
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	114, 227
BspMAI	CTGCAG	1 cut(s)	1031
BspPI	GGATC	1 cut(s)	53
BspT107I	GGYRCC	1 cut(s)	225
BsrDI	GCAATG	4 cut(s)	648, 804, 824, 908
BsrI	ACTGG	3 cut(s)	279, 686, 1170
BssECI	CCNNGG	1 cut(s)	736
BssMI	GATC	5 cut(s)	58, 148, 442, 574, 578
BssNI	GRCGYC	1 cut(s)	130
BssT1I	CCWWGG	1 cut(s)	736
Bst4CI	ACNGT	3 cut(s)	187, 682, 766
Bst6I	CTCTTC	3 cut(s)	352, 787, 1014
BstACI	GRCGYC	1 cut(s)	130
BstC8I	GCNNGC	4 cut(s)	55, 655, 1014, 1137
BstDEI	CTNAG	6 cut(s)	177, 507, 615, 1073, 1190, 1202
BstDSI	CCRYGG	1 cut(s)	736
BstF5I	GGATG	3 cut(s)	547, 809, 856
BstFNI	CGCG	2 cut(s)	731, 978
BstHHI	GCGC	1 cut(s)	980
BstKTI	GATC	5 cut(s)	61, 151, 445, 577, 581
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	5 cut(s)	58, 148, 442, 574, 578
BstMWI	GCNNNNNNNGC	2 cut(s)	654, 1175
BstNSI	RCATGY	4 cut(s)	89, 194, 661, 1139
BstSFI	CTRYAG	1 cut(s)	1027
BstUI	CGCG	2 cut(s)	731, 978
BstV1I	GCAGC	7 cut(s)	467, 505, 871, 970, 992, 1041, 1105
BstV2I	GAAGAC	1 cut(s)	188
Bsu15I	ATCGAT	1 cut(s)	577
BsuRI	GGCC	1 cut(s)	430
BsuTUI	ATCGAT	1 cut(s)	577
BtgI	CCRYGG	1 cut(s)	736
BtgZI	GCGATG	1 cut(s)	712
BtsCI	GGATG	3 cut(s)	547, 809, 856
BtsIMutI	CAGTG	1 cut(s)	693
Cac8I	GCNNGC	4 cut(s)	55, 655, 1014, 1137
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	1 cut(s)	980
Cfr13I	GGNCC	1 cut(s)	428
ClaI	ATCGAT	1 cut(s)	577
CseI	GACGC	2 cut(s)	44, 138
Csp6I	GTAC	5 cut(s)	188, 226, 275, 683, 778
CviAII	CATG	9 cut(s)	86, 191, 392, 481, 658, 737, 847, 949, 1136
CviQI	GTAC	5 cut(s)	188, 226, 275, 683, 778
DdeI	CTNAG	6 cut(s)	177, 507, 615, 1073, 1190, 1202
DpnI	GATC	5 cut(s)	60, 150, 444, 576, 580
DpnII	GATC	5 cut(s)	58, 148, 442, 574, 578
DraI	TTTAAA	2 cut(s)	285, 537
Eam1104I	CTCTTC	3 cut(s)	352, 787, 1014
EarI	CTCTTC	3 cut(s)	352, 787, 1014
Eco130I	CCWWGG	1 cut(s)	736
Eco57I	CTGAAG	4 cut(s)	768, 840, 951, 1038
EcoRI	GAATTC	2 cut(s)	103, 377
EcoT14I	CCWWGG	1 cut(s)	736
ErhI	CCWWGG	1 cut(s)	736
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	9 cut(s)	89, 194, 395, 484, 661, 740, 850, 952, 1139
FatI	CATG	9 cut(s)	85, 190, 391, 480, 657, 736, 846, 948, 1135
FauNDI	CATATG	1 cut(s)	243
Fnu4HI	GCNGC	7 cut(s)	456, 519, 885, 981, 984, 1030, 1119
FokI	GGATG	3 cut(s)	554, 796, 863
Fsp4HI	GCNGC	7 cut(s)	456, 519, 885, 981, 984, 1030, 1119
FspBI	CTAG	2 cut(s)	425, 1089
GlaI	GCGC	1 cut(s)	979
GluI	GCNGC	7 cut(s)	456, 519, 885, 981, 984, 1030, 1119
HaeIII	GGCC	1 cut(s)	430
HgaI	GACGC	2 cut(s)	44, 138
HhaI	GCGC	1 cut(s)	980
Hin1I	GRCGYC	1 cut(s)	130
Hin1II	CATG	9 cut(s)	89, 194, 395, 484, 661, 740, 850, 952, 1139
Hin6I	GCGC	1 cut(s)	978
HinP1I	GCGC	1 cut(s)	978
HincII	GTYRAC	1 cut(s)	919
HindII	GTYRAC	1 cut(s)	919
HinfI	GANTC	3 cut(s)	302, 559, 1094
Hpy166II	GTNNAC	1 cut(s)	919
Hpy188I	TCNGA	3 cut(s)	442, 616, 859
Hpy188III	TCNNGA	5 cut(s)	296, 392, 791, 1124, 1148
Hpy8I	GTNNAC	1 cut(s)	919
HpyAV	CCTTC	5 cut(s)	533, 790, 868, 891, 1057
HpyCH4III	ACNGT	3 cut(s)	187, 682, 766
HpyCH4V	TGCA	4 cut(s)	455, 809, 887, 1029
HpyF10VI	GCNNNNNNNGC	2 cut(s)	654, 1175
HpyF3I	CTNAG	6 cut(s)	177, 507, 615, 1073, 1190, 1202
Hsp92I	GRCGYC	1 cut(s)	130
Hsp92II	CATG	9 cut(s)	89, 194, 395, 484, 661, 740, 850, 952, 1139
HspAI	GCGC	1 cut(s)	978
KpnI	GGTACC	1 cut(s)	229
Kzo9I	GATC	5 cut(s)	58, 148, 442, 574, 578
Lsp1109I	GCAGC	7 cut(s)	467, 505, 871, 970, 992, 1041, 1105
LweI	GCATC	3 cut(s)	345, 818, 841
MaeI	CTAG	2 cut(s)	425, 1089
MaeIII	GTNAC	1 cut(s)	676
MalI	GATC	5 cut(s)	60, 150, 444, 576, 580
MboI	GATC	5 cut(s)	58, 148, 442, 574, 578
MboII	GAAGA	6 cut(s)	193, 311, 339, 407, 774, 1031
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	959
MmeI	TCCRAC	4 cut(s)	22, 61, 587, 996
MnlI	CCTC	4 cut(s)	243, 1015, 1108, 1164
MroXI	GAANNNNTTC	1 cut(s)	1098
MseI	TTAA	9 cut(s)	284, 405, 462, 536, 584, 621, 641, 866, 891
MslI	CAYNNNNRTG	2 cut(s)	318, 716
MspA1I	CMGCKG	1 cut(s)	983
MunI	CAATTG	1 cut(s)	207
MvnI	CGCG	2 cut(s)	731, 978
MwoI	GCNNNNNNNGC	2 cut(s)	654, 1175
NcoI	CCATGG	1 cut(s)	736
NdeI	CATATG	1 cut(s)	243
NdeII	GATC	5 cut(s)	58, 148, 442, 574, 578
NlaIII	CATG	9 cut(s)	89, 194, 395, 484, 661, 740, 850, 952, 1139
NlaIV	GGNNCC	2 cut(s)	114, 227
NspI	RCATGY	4 cut(s)	89, 194, 661, 1139
PaeI	GCATGC	1 cut(s)	1139
PagI	TCATGA	1 cut(s)	391
PciI	ACATGT	2 cut(s)	85, 190
PdmI	GAANNNNTTC	1 cut(s)	1098
PfeI	GAWTC	3 cut(s)	302, 559, 1094
PkrI	GCNGC	7 cut(s)	457, 520, 886, 982, 985, 1031, 1120
PscI	ACATGT	2 cut(s)	85, 190
PsiI	TTATAA	1 cut(s)	1110
PspN4I	GGNNCC	2 cut(s)	114, 227
PspPI	GGNCC	1 cut(s)	428
PstI	CTGCAG	1 cut(s)	1031
PvuII	CAGCTG	1 cut(s)	983
RsaI	GTAC	5 cut(s)	189, 227, 276, 684, 779
RsaNI	GTAC	5 cut(s)	188, 226, 275, 683, 778
RseI	CAYNNNNRTG	2 cut(s)	318, 716
SaqAI	TTAA	9 cut(s)	284, 405, 462, 536, 584, 621, 641, 866, 891
SatI	GCNGC	7 cut(s)	456, 519, 885, 981, 984, 1030, 1119
Sau3AI	GATC	5 cut(s)	58, 148, 442, 574, 578
Sau96I	GGNCC	1 cut(s)	428
SduI	GDGCHC	1 cut(s)	959
SfaNI	GCATC	3 cut(s)	345, 818, 841
SfcI	CTRYAG	1 cut(s)	1027
SmiMI	CAYNNNNRTG	2 cut(s)	318, 716
SmlI	CTYRAG	1 cut(s)	1122
SmoI	CTYRAG	1 cut(s)	1122
SphI	GCATGC	1 cut(s)	1139
SsiI	CCGC	1 cut(s)	976
SspI	AATATT	1 cut(s)	552
SspMI	CTAG	2 cut(s)	425, 1089
StyI	CCWWGG	1 cut(s)	736
TaaI	ACNGT	3 cut(s)	187, 682, 766
TaqI	TCGA	2 cut(s)	445, 577
TatI	WGTACW	2 cut(s)	187, 777
TfiI	GAWTC	3 cut(s)	302, 559, 1094
Tru1I	TTAA	9 cut(s)	284, 405, 462, 536, 584, 621, 641, 866, 891
Tru9I	TTAA	9 cut(s)	284, 405, 462, 536, 584, 621, 641, 866, 891
TscAI	CASTG	1 cut(s)	693
TseI	GCWGC	7 cut(s)	455, 518, 884, 980, 983, 1029, 1118
TspDTI	ATGAA	5 cut(s)	260, 408, 489, 497, 715
TspRI	CASTG	1 cut(s)	693
XapI	RAATTY	7 cut(s)	19, 45, 103, 168, 247, 377, 749
XceI	RCATGY	4 cut(s)	89, 194, 661, 1139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	844
XmnI	GAANNNNTTC	1 cut(s)	1098
XspI	CTAG	2 cut(s)	425, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.