Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019608

Physical Location & Seq

Genomic Coordinates Reverse (-)

3638191 .. 3639965

Gene Structure 1775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGAAACTGTCTAAAGCCTCTCAAAGAACAACCTCCTTCAGCTTCTCCCAAGCCTCTCACCATCCCTTCAAGTTCAGTGGAGCCAGTAAAGGAGAATTTGAAAGAGTTTAGATTTGCCGAATTGAACAAGGCAACAAAGAGATTCAGAAAATACATGGTCATAAAAGGTAATGATAATGGGTTTACTCGAACATTCTACGAAGGCTGCATCAATGAGACAACCTTTGCTCCATCAAGAACTGGAATCACTGTTTCTGTCATGGAATGTTATCAAGATAATTCGCAGACTCTACAAGACTGGAAGGAAGAAGTGAAGTCTCTTGGACGTATTTCTCATCCCAATTTAGTCAAACTTTTAGGCTATTGTTGTGAAGAAAACAAATCATTCTTAGTTTTCGAATACTTGCATAAAGGAAGTTTGAACCGTTACATTTTCGGAAAAGAAGAAGAAGCATTACCGTGGGAAACACGGGTCAAGATAGCCATAGGAGCAGCTCAAAGTATTGCATTTCTACATTGGGTCAAGAACAGCGCGCTATATCGAGAACTCAGAATGTATAACATTTTGCTTGACGAGCACTACAACACAAAATTGTTCTATCTTGGATCAAAGAAACTATGTTTGTTAGAAGAAAGCGTGACGACTGCATTCATAGGAAGAACTGTATATATACCTCCTGAATATGTAATCTCAGGTCATTTGGGAACGAAGAGTGATGTGTATACATTTGGTGTGATATTGTTAGAGATTTTAACTGGTTTGAAAGCTTCAGATGGTAAAAAGAATGAGAACATGCAAAGCTTACATGTATGGACTAAACCTTTCTTGTCTGATCAATCTAAAATCCGGGAAATCATCGATCCTCGACTTGGGAACGATTATCCTGTGAATGCAGCGACACAAATGGGAAAACTCATCAAAAGATGCATCAAGTTGGACACAAGGAAACGACCATCGATGCAACAAGTCTTTGATGGTTTGAATGATATTGCAGAGATTAAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

336

Amino Acids

38.4

Weight (kDa)

8.95

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	67 - 325	5.3e-30	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	89 - 325	7.6e-31	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11360 AT5G11360 AT5G11360 AT5G11400 AT5G11400 AT5G11410 AT5G11410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	725
AccII	CGCG	1 cut(s)	536
AclWI	GGATC	2 cut(s)	616, 857
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	2 cut(s)	24, 756
AfiI	CCNNNNNNNGG	1 cut(s)	872
AflIII	ACRYGT	1 cut(s)	808
AgsI	TTSAA	6 cut(s)	72, 103, 127, 424, 766, 985
AluBI	AGCT	4 cut(s)	44, 497, 770, 804
AluI	AGCT	4 cut(s)	44, 497, 770, 804
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	2 cut(s)	212, 324
AlwI	GGATC	2 cut(s)	616, 857
ApeKI	GCWGC	3 cut(s)	207, 494, 896
ApoI	RAATTY	1 cut(s)	97
AspLEI	GCGC	2 cut(s)	536, 538
AsuC2I	CCSGG	1 cut(s)	851
AsuHPI	GGTGA	1 cut(s)	52
AsuII	TTCGAA	1 cut(s)	399
BarI	GAAGNNNNNNTAC	2 cut(s)	441, 473
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	3 cut(s)	194, 506, 908
BccI	CCATC	5 cut(s)	71, 241, 770, 964, 971
BclI	TGATCA	1 cut(s)	835
BcnI	CCSGG	1 cut(s)	851
BcoDI	GTCTC	2 cut(s)	212, 324
BisI	GCNGC	3 cut(s)	208, 495, 897
BlsI	GCNGC	3 cut(s)	209, 496, 898
Bme1390I	CCNGG	1 cut(s)	851
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	851
BmsI	GCATC	4 cut(s)	219, 917, 939, 951
Bpu14I	TTCGAA	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	851
Bsa29I	ATCGAT	2 cut(s)	861, 959
BsaJI	CCNNGG	1 cut(s)	461
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	872
Bse1I	ACTGG	4 cut(s)	86, 247, 305, 763
BseCI	ATCGAT	2 cut(s)	861, 959
BseDI	CCNNGG	1 cut(s)	461
BseGI	GGATG	2 cut(s)	63, 337
BseLI	CCNNNNNNNGG	1 cut(s)	872
BseMII	CTCAG	2 cut(s)	565, 708
BseNI	ACTGG	4 cut(s)	86, 247, 305, 763
BsePI	GCGCGC	1 cut(s)	534
BseXI	GCAGC	3 cut(s)	194, 506, 908
Bsh1236I	CGCG	1 cut(s)	536
BshVI	ATCGAT	2 cut(s)	861, 959
BsiHKAI	GWGCWC	1 cut(s)	582
BsiSI	CCGG	1 cut(s)	850
BslI	CCNNNNNNNGG	1 cut(s)	872
BsmAI	GTCTC	2 cut(s)	212, 324
BsmI	GAATGC	2 cut(s)	650, 898
Bsp119I	TTCGAA	1 cut(s)	399
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp143I	GATC	3 cut(s)	608, 835, 862
BspCNI	CTCAG	2 cut(s)	564, 707
BspDI	ATCGAT	2 cut(s)	861, 959
BspFNI	CGCG	1 cut(s)	536
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	2 cut(s)	616, 857
BspT104I	TTCGAA	1 cut(s)	399
BsrI	ACTGG	4 cut(s)	86, 247, 305, 763
BssECI	CCNNGG	1 cut(s)	461
BssHII	GCGCGC	1 cut(s)	534
BssMI	GATC	3 cut(s)	608, 835, 862
BssNAI	GTATAC	1 cut(s)	726
Bst1107I	GTATAC	1 cut(s)	726
Bst4CI	ACNGT	5 cut(s)	11, 253, 428, 462, 667
Bst6I	CTCTTC	1 cut(s)	707
BstBI	TTCGAA	1 cut(s)	399
BstC8I	GCNNGC	1 cut(s)	536
BstDEI	CTNAG	3 cut(s)	391, 551, 694
BstDSI	CCRYGG	1 cut(s)	461
BstF5I	GGATG	2 cut(s)	63, 337
BstFNI	CGCG	1 cut(s)	536
BstHHI	GCGC	2 cut(s)	536, 538
BstKTI	GATC	3 cut(s)	611, 838, 865
BstMAI	GTCTC	2 cut(s)	212, 324
BstMBI	GATC	3 cut(s)	608, 835, 862
BstMWI	GCNNNNNNNGC	2 cut(s)	491, 577
BstNSI	RCATGY	2 cut(s)	799, 812
BstSCI	CCNGG	1 cut(s)	849
BstUI	CGCG	1 cut(s)	536
BstV1I	GCAGC	3 cut(s)	194, 506, 908
BstZ17I	GTATAC	1 cut(s)	726
Bsu15I	ATCGAT	2 cut(s)	861, 959
BsuTUI	ATCGAT	2 cut(s)	861, 959
BtgI	CCRYGG	1 cut(s)	461
BtsCI	GGATG	2 cut(s)	63, 337
BtsIMutI	CAGTG	2 cut(s)	84, 249
Cac8I	GCNNGC	1 cut(s)	536
CfoI	GCGC	2 cut(s)	536, 538
ClaI	ATCGAT	2 cut(s)	861, 959
CspCI	CAANNNNNGTGG	2 cut(s)	60, 95
CviAII	CATG	4 cut(s)	157, 262, 796, 809
DdeI	CTNAG	3 cut(s)	391, 551, 694
DpnI	GATC	3 cut(s)	610, 837, 864
DpnII	GATC	3 cut(s)	608, 835, 862
Eam1104I	CTCTTC	1 cut(s)	707
EarI	CTCTTC	1 cut(s)	707
Eco57I	CTGAAG	2 cut(s)	24, 756
EcoT22I	ATGCAT	1 cut(s)	932
FaeI	CATG	4 cut(s)	160, 265, 799, 812
FatI	CATG	4 cut(s)	156, 261, 795, 808
FbaI	TGATCA	1 cut(s)	835
FblI	GTMKAC	1 cut(s)	725
Fnu4HI	GCNGC	3 cut(s)	208, 495, 897
FokI	GGATG	2 cut(s)	50, 324
Fsp4HI	GCNGC	3 cut(s)	208, 495, 897
GlaI	GCGC	2 cut(s)	535, 537
GluI	GCNGC	3 cut(s)	208, 495, 897
HapII	CCGG	1 cut(s)	850
HhaI	GCGC	2 cut(s)	536, 538
Hin1II	CATG	4 cut(s)	160, 265, 799, 812
Hin6I	GCGC	2 cut(s)	534, 536
HinP1I	GCGC	2 cut(s)	534, 536
HindIII	AAGCTT	2 cut(s)	768, 802
HinfI	GANTC	3 cut(s)	144, 246, 289
HpaII	CCGG	1 cut(s)	850
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	2 cut(s)	186, 726
Hpy188I	TCNGA	5 cut(s)	149, 440, 554, 775, 835
Hpy188III	TCNNGA	6 cut(s)	237, 275, 478, 526, 545, 680
Hpy8I	GTNNAC	2 cut(s)	186, 726
HpyAV	CCTTC	4 cut(s)	48, 78, 197, 298
HpyCH4III	ACNGT	5 cut(s)	11, 253, 428, 462, 667
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	9 cut(s)	210, 409, 509, 650, 799, 896, 930, 964, 995
HpyF10VI	GCNNNNNNNGC	2 cut(s)	491, 577
HpyF3I	CTNAG	3 cut(s)	391, 551, 694
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	4 cut(s)	160, 265, 799, 812
HspAI	GCGC	2 cut(s)	534, 536
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	3 cut(s)	608, 835, 862
LmnI	GCTCC	3 cut(s)	82, 235, 491
LpnPI	CCDG	8 cut(s)	99, 228, 286, 681, 693, 744, 863, 900
Lsp1109I	GCAGC	3 cut(s)	194, 506, 908
LweI	GCATC	4 cut(s)	219, 917, 939, 951
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	2 cut(s)	428, 640
MalI	GATC	3 cut(s)	610, 837, 864
MboI	GATC	3 cut(s)	608, 835, 862
MboII	GAAGA	7 cut(s)	320, 386, 458, 461, 644, 672, 724
MhlI	GDGCHC	1 cut(s)	582
MluCI	AATT	5 cut(s)	97, 122, 280, 343, 593
MlyI	GAGTC	1 cut(s)	283
MmeI	TCCRAC	1 cut(s)	918
MnlI	CCTC	5 cut(s)	30, 45, 66, 687, 876
Mph1103I	ATGCAT	1 cut(s)	932
MseI	TTAA	3 cut(s)	755, 1002, 1009
MslI	CAYNNNNRTG	1 cut(s)	460
MspI	CCGG	1 cut(s)	850
MspR9I	CCNGG	1 cut(s)	851
Mva1269I	GAATGC	2 cut(s)	650, 898
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	2 cut(s)	491, 577
NciI	CCSGG	1 cut(s)	851
NdeII	GATC	3 cut(s)	608, 835, 862
NlaIII	CATG	4 cut(s)	160, 265, 799, 812
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	640
NsiI	ATGCAT	1 cut(s)	932
NspI	RCATGY	2 cut(s)	799, 812
NspV	TTCGAA	1 cut(s)	399
PauI	GCGCGC	1 cut(s)	534
PciI	ACATGT	1 cut(s)	808
PctI	GAATGC	2 cut(s)	650, 898
PfeI	GAWTC	2 cut(s)	144, 246
PfoI	TCCNGGA	1 cut(s)	849
PkrI	GCNGC	3 cut(s)	209, 496, 898
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PscI	ACATGT	1 cut(s)	808
PspN4I	GGNNCC	1 cut(s)	84
PteI	GCGCGC	1 cut(s)	534
RseI	CAYNNNNRTG	1 cut(s)	460
SaqAI	TTAA	3 cut(s)	755, 1002, 1009
SatI	GCNGC	3 cut(s)	208, 495, 897
Sau3AI	GATC	3 cut(s)	608, 835, 862
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	851
SduI	GDGCHC	1 cut(s)	582
SfaNI	GCATC	4 cut(s)	219, 917, 939, 951
SfuI	TTCGAA	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	460
Sse9I	AATT	5 cut(s)	97, 122, 280, 343, 593
StyD4I	CCNGG	1 cut(s)	849
TaaI	ACNGT	5 cut(s)	11, 253, 428, 462, 667
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	6 cut(s)	190, 399, 544, 861, 868, 959
TasI	AATT	5 cut(s)	97, 122, 280, 343, 593
TfiI	GAWTC	2 cut(s)	144, 246
Tru1I	TTAA	3 cut(s)	755, 1002, 1009
Tru9I	TTAA	3 cut(s)	755, 1002, 1009
TscAI	CASTG	2 cut(s)	84, 256
TseFI	GTSAC	1 cut(s)	640
TseI	GCWGC	3 cut(s)	207, 494, 896
Tsp45I	GTSAC	1 cut(s)	640
TspDTI	ATGAA	1 cut(s)	643
TspRI	CASTG	2 cut(s)	84, 256
XapI	RAATTY	1 cut(s)	97
XceI	RCATGY	2 cut(s)	799, 812
XmiI	GTMKAC	1 cut(s)	725
Zsp2I	ATGCAT	1 cut(s)	932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.