AT5G20045

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
6771472 .. 6772252
781 bp
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UTR
Exon/CDS
Intron
AT5G20045.1

Sequence Viewer

Length: 234 bp
ATGCAAAGGTTACAAATAAGTTCTCGGCCATCTGAAGAGTTTCTGATTAACCTCTCGGTGGATTCCGCAAGCCCTGACGGTCTCGTGGTCTACGACGACATAGCCAAGAAGGAACTGTCTCTACACAACAATAGTTACAAGTCTGCTAATGGAGAGAGAGCTATTCACCTAATCCCTATTGTTCTCTTTCTATGTGGTTTTATGCTTTGGGTTTTCTCAAGTGCAACTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.6

Weight (kDa)

5.47

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20045
prunus_persica Prupe.7G238200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0089271
rosa_samantha Rh2AG045000 Rh2CG044900 Rh2DG044000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AciI CCGC 1 cut(s) 66
AcoI YGGCCR 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 58
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw26I GTCTC 2 cut(s) 86, 123
AoxI GGCC 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 158
BauI CACGAG 1 cut(s) 83
BccI CCATC 1 cut(s) 37
BcoDI GTCTC 2 cut(s) 86, 123
BpuEI CTTGAG 1 cut(s) 202
BsaI GGTCTC 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 58
BshFI GGCC 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 2 cut(s) 86, 123
BsnI GGCC 1 cut(s) 28
Bso31I GGTCTC 1 cut(s) 86
BspACI CCGC 1 cut(s) 66
BspANI GGCC 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 86
BssSI CACGAG 1 cut(s) 83
Bst2BI CACGAG 1 cut(s) 83
Bst4CI ACNGT 2 cut(s) 80, 117
Bst6I CTCTTC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 70
BstMAI GTCTC 2 cut(s) 86, 123
BsuRI GGCC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 70
CviJI RGCY 4 cut(s) 28, 72, 104, 161
CviKI_1 RGCY 4 cut(s) 28, 72, 104, 161
EaeI YGGCCR 1 cut(s) 26
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 54
FaiI YATR 5 cut(s) 101, 193, 203, 230, 232
FblI GTMKAC 1 cut(s) 90
HaeIII GGCC 1 cut(s) 28
HinfI GANTC 1 cut(s) 62
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 34, 45
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 80, 117
HpyCH4V TGCA 2 cut(s) 4, 224
LpnPI CCDG 1 cut(s) 87
MaeIII GTNAC 2 cut(s) 9, 134
MboII GAAGA 1 cut(s) 47
MnlI CCTC 1 cut(s) 62
MroXI GAANNNNTTC 1 cut(s) 39
MseI TTAA 1 cut(s) 48
NmeAIII GCCGAG 1 cut(s) 4
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 62
PsrI GAACNNNNNNTAC 2 cut(s) 105, 137
SaqAI TTAA 1 cut(s) 48
SetI ASST 4 cut(s) 11, 54, 163, 171
SgeI CNNG 8 cut(s) 36, 67, 81, 86, 95, 97, 118, 151
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
SsiI CCGC 1 cut(s) 66
TaaI ACNGT 2 cut(s) 80, 117
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.