Prupe.7G238200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0020268
Physical Location & Seq
Reverse (-)
20600203 .. 20600481
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G238200.1

Sequence Viewer

Length: 279 bp
ATGCATCGATCATCAAGCACTTCTCGAGCCTCGGAAGAGTTCTTGGTGAACTTCGCACCAGCATCCCTGGCCCTGGCCTCATCTCCACCTCTAAAAACTGCAGCAGCTTCTGAAAACTTGCCTGTGTATAATGCAAATTCGGATCATGCTACAAAAAAGGAAATTGCTCTGCTGCATCATAAGTCGTCAGGAGGAGAGAATGTCATTCACCTAATTCCCCTTGTTTTGGTTCTCTGCGGTTTTATACTTTGGATTTTCTCTCATCCAGCTAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

9.87

Weight (kDa)

8.0

Isoelectric Point (pI)

62.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20045
prunus_persica Prupe.7G238200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0089271
rosa_samantha Rh2AG045000 Rh2CG044900 Rh2DG044000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 237
AclWI GGATC 1 cut(s) 150
AcsI RAATTY 1 cut(s) 136
AfiI CCNNNNNNNGG 2 cut(s) 73, 226
AjnI CCWGG 2 cut(s) 66, 72
AluBI AGCT 2 cut(s) 107, 269
AluI AGCT 2 cut(s) 107, 269
AlwI GGATC 1 cut(s) 150
AlwNI CAGNNNCTG 1 cut(s) 110
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 2 cut(s) 69, 75
ApeKI GCWGC 3 cut(s) 101, 104, 172
ApoI RAATTY 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 2 cut(s) 58, 200
AvaI CYCGRG 1 cut(s) 24
BbvI GCAGC 3 cut(s) 113, 116, 159
BciT130I CCWGG 2 cut(s) 68, 74
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 3 cut(s) 102, 105, 173
BlsI GCNGC 3 cut(s) 103, 106, 174
Bme1390I CCNGG 2 cut(s) 68, 74
BmeT110I CYCGRG 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 70
BmrFI CCNGG 2 cut(s) 68, 74
BmsI GCATC 3 cut(s) 13, 71, 184
Bsa29I ATCGAT 1 cut(s) 7
BsaJI CCNNGG 3 cut(s) 30, 66, 72
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 226
BseBI CCWGG 2 cut(s) 68, 74
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 3 cut(s) 30, 66, 72
BseGI GGATG 2 cut(s) 62, 262
BseLI CCNNNNNNNGG 2 cut(s) 73, 226
BseRI GAGGAG 1 cut(s) 207
BseXI GCAGC 3 cut(s) 113, 116, 159
BshFI GGCC 2 cut(s) 71, 77
BshVI ATCGAT 1 cut(s) 7
BsiHKCI CYCGRG 1 cut(s) 24
BslI CCNNNNNNNGG 2 cut(s) 73, 226
BsnI GGCC 2 cut(s) 71, 77
BsoBI CYCGRG 1 cut(s) 24
Bsp143I GATC 2 cut(s) 8, 142
BspACI CCGC 1 cut(s) 237
BspANI GGCC 2 cut(s) 71, 77
BspDI ATCGAT 1 cut(s) 7
BspMAI CTGCAG 1 cut(s) 103
BspPI GGATC 1 cut(s) 150
BssECI CCNNGG 3 cut(s) 30, 66, 72
BssMI GATC 2 cut(s) 8, 142
Bst2UI CCWGG 2 cut(s) 68, 74
Bst4CI ACNGT 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 30
BstF5I GGATG 2 cut(s) 62, 262
BstKTI GATC 2 cut(s) 11, 145
BstMBI GATC 2 cut(s) 8, 142
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 2 cut(s) 68, 74
BstSCI CCNGG 2 cut(s) 66, 72
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 3 cut(s) 113, 116, 159
Bsu15I ATCGAT 1 cut(s) 7
BsuRI GGCC 2 cut(s) 71, 77
BsuTUI ATCGAT 1 cut(s) 7
BtsCI GGATG 2 cut(s) 62, 262
CaiI CAGNNNCTG 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 70
ClaI ATCGAT 1 cut(s) 7
CviAII CATG 1 cut(s) 146
CviJI RGCY 5 cut(s) 29, 71, 77, 107, 269
CviKI_1 RGCY 5 cut(s) 29, 71, 77, 107, 269
DpnI GATC 2 cut(s) 10, 144
DpnII GATC 2 cut(s) 8, 142
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco88I CYCGRG 1 cut(s) 24
EcoRII CCWGG 2 cut(s) 66, 72
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 149
FaiI YATR 4 cut(s) 129, 147, 180, 245
FatI CATG 1 cut(s) 145
Fnu4HI GCNGC 3 cut(s) 102, 105, 173
FokI GGATG 2 cut(s) 49, 249
Fsp4HI GCNGC 3 cut(s) 102, 105, 173
GluI GCNGC 3 cut(s) 102, 105, 173
HaeIII GGCC 2 cut(s) 71, 77
Hin1II CATG 1 cut(s) 149
HphI GGTGA 2 cut(s) 58, 200
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 3 cut(s) 34, 112, 142
Hpy188III TCNNGA 2 cut(s) 24, 189
Hpy8I GTNNAC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4V TGCA 4 cut(s) 4, 101, 134, 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
Hsp92II CATG 1 cut(s) 149
Kzo9I GATC 2 cut(s) 8, 142
LpnPI CCDG 7 cut(s) 53, 59, 72, 80, 86, 135, 174
Lsp1109I GCAGC 3 cut(s) 113, 116, 159
LweI GCATC 3 cut(s) 13, 71, 184
MalI GATC 2 cut(s) 10, 144
MboI GATC 2 cut(s) 8, 142
MboII GAAGA 1 cut(s) 47
MluCI AATT 3 cut(s) 136, 162, 213
MnlI CCTC 4 cut(s) 40, 88, 99, 185
Mph1103I ATGCAT 1 cut(s) 6
MspR9I CCNGG 2 cut(s) 68, 74
MvaI CCWGG 2 cut(s) 68, 74
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 2 cut(s) 8, 142
NlaIII CATG 1 cut(s) 149
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 24
PkrI GCNGC 3 cut(s) 103, 106, 174
Psp6I CCWGG 2 cut(s) 66, 72
PspGI CCWGG 2 cut(s) 66, 72
PspPI GGNCC 1 cut(s) 70
PstI CTGCAG 1 cut(s) 103
PstNI CAGNNNCTG 1 cut(s) 110
SatI GCNGC 3 cut(s) 102, 105, 173
Sau3AI GATC 2 cut(s) 8, 142
Sau96I GGNCC 1 cut(s) 70
ScrFI CCNGG 2 cut(s) 68, 74
SetI ASST 4 cut(s) 91, 109, 213, 271
SfaNI GCATC 3 cut(s) 13, 71, 184
SfcI CTRYAG 1 cut(s) 99
Sfr274I CTCGAG 1 cut(s) 24
SlaI CTCGAG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 24
SmoI CTYRAG 1 cut(s) 24
Sse9I AATT 3 cut(s) 136, 162, 213
SsiI CCGC 1 cut(s) 237
StyD4I CCNGG 2 cut(s) 66, 72
TaaI ACNGT 1 cut(s) 276
TaqI TCGA 2 cut(s) 7, 25
TasI AATT 3 cut(s) 136, 162, 213
TseI GCWGC 3 cut(s) 101, 104, 172
XapI RAATTY 1 cut(s) 136
XhoI CTCGAG 1 cut(s) 24
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.