Rh2AG045000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0020268
Physical Location & Seq
Forward (+)
3441126 .. 3450243
9118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG045000.1

Sequence Viewer

Length: 393 bp
ATGCATCGATCATCGAGCACTACGCGAGCCTCCGAGGAGTTCTTGGTGAACTTTTCGCCTGCGTCCTTGTCTCTAAGCTCTCCGCTTCTGAATACTACAGCAGTCGCTTCCCTGGATGACTTGCCTGTGTATGATACAAATTCTGATCACGTTACCAAAAAAGAAATTGATATGCATCATCACAATCCTTTAGGAGAGAATGTCATTCACCTAATTCCCCTGCATTGCCACCCAAAGCAGCTGGAATTGCTTGCATCTGGACAAGTGTGGGCATCTCATAACTTGCAGCCTCTACACCCATCTGAATTTGTCTGCACCATGACAACCATGCAATTCGACTCAAATTGCTCAAATCTAACAAGCAAGGAACAATTAACAATAACAGATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.47

Weight (kDa)

5.66

Isoelectric Point (pI)

57.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20045
prunus_persica Prupe.7G238200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0089271
rosa_samantha Rh2AG045000 Rh2CG044900 Rh2DG044000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 25
AciI CCGC 1 cut(s) 83
AcsI RAATTY 2 cut(s) 139, 305
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 2 cut(s) 78, 241
AluI AGCT 2 cut(s) 78, 241
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 75
ApeKI GCWGC 2 cut(s) 238, 286
ApoI RAATTY 2 cut(s) 139, 305
AsuHPI GGTGA 2 cut(s) 58, 200
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 2 cut(s) 250, 298
BccI CCATC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 113
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 391
BfmI CTRYAG 1 cut(s) 96
BisI GCNGC 2 cut(s) 239, 287
BlsI GCNGC 2 cut(s) 240, 288
Bme1390I CCNGG 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 4 cut(s) 13, 184, 263, 281
Bsa29I ATCGAT 1 cut(s) 7
BsaBI GATNNNNATC 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 33, 111
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bse3DI GCAATG 1 cut(s) 223
Bse8I GATNNNNATC 1 cut(s) 174
BseBI CCWGG 1 cut(s) 113
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 2 cut(s) 33, 111
BseGI GGATG 1 cut(s) 121
BseJI GATNNNNATC 1 cut(s) 174
BseMI GCAATG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 2 cut(s) 250, 298
BsgI GTGCAG 1 cut(s) 298
Bsh1236I CGCG 1 cut(s) 25
BshVI ATCGAT 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 3 cut(s) 8, 145, 385
BspACI CCGC 1 cut(s) 83
BspDI ATCGAT 1 cut(s) 7
BspFNI CGCG 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 223
BssECI CCNNGG 2 cut(s) 33, 111
BssMI GATC 3 cut(s) 8, 145, 385
Bst2UI CCWGG 1 cut(s) 113
BstC8I GCNNGC 3 cut(s) 27, 60, 252
BstDEI CTNAG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 121
BstFNI CGCG 1 cut(s) 25
BstKTI GATC 3 cut(s) 11, 148, 388
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 3 cut(s) 8, 145, 385
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 96
BstUI CGCG 1 cut(s) 25
BstV1I GCAGC 2 cut(s) 250, 298
Bsu15I ATCGAT 1 cut(s) 7
BsuTUI ATCGAT 1 cut(s) 7
BtsCI GGATG 1 cut(s) 121
Cac8I GCNNGC 3 cut(s) 27, 60, 252
ClaI ATCGAT 1 cut(s) 7
CseI GACGC 1 cut(s) 51
CviAII CATG 2 cut(s) 319, 328
CviJI RGCY 4 cut(s) 29, 78, 241, 289
CviKI_1 RGCY 4 cut(s) 29, 78, 241, 289
DdeI CTNAG 1 cut(s) 74
DpnI GATC 3 cut(s) 10, 147, 387
DpnII GATC 3 cut(s) 8, 145, 385
EcoRII CCWGG 1 cut(s) 111
EcoT22I ATGCAT 2 cut(s) 6, 177
FaeI CATG 2 cut(s) 322, 331
FaiI YATR 5 cut(s) 132, 173, 279, 320, 329
FatI CATG 2 cut(s) 318, 327
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 239, 287
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 239, 287
FspBI CTAG 1 cut(s) 391
GluI GCNGC 2 cut(s) 239, 287
HgaI GACGC 1 cut(s) 51
Hin1II CATG 2 cut(s) 322, 331
HinfI GANTC 1 cut(s) 338
HphI GGTGA 2 cut(s) 58, 200
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 4 cut(s) 34, 90, 145, 304
Hpy188III TCNNGA 1 cut(s) 258
Hpy8I GTNNAC 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 7 cut(s) 4, 175, 223, 254, 286, 315, 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 2 cut(s) 322, 331
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 3 cut(s) 8, 145, 385
LpnPI CCDG 7 cut(s) 72, 98, 125, 138, 227, 233, 243
Lsp1109I GCAGC 2 cut(s) 250, 298
LweI GCATC 4 cut(s) 13, 184, 263, 281
MaeI CTAG 1 cut(s) 391
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 151
MalI GATC 3 cut(s) 10, 147, 387
MboI GATC 3 cut(s) 8, 145, 385
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 8 cut(s) 139, 165, 213, 245, 305, 332, 343, 371
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 3 cut(s) 28, 40, 300
Mph1103I ATGCAT 2 cut(s) 6, 177
MseI TTAA 1 cut(s) 374
MspA1I CMGCKG 1 cut(s) 241
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 247
NdeII GATC 3 cut(s) 8, 145, 385
NlaIII CATG 2 cut(s) 322, 331
NsiI ATGCAT 2 cut(s) 6, 177
PkrI GCNGC 2 cut(s) 240, 288
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PvuII CAGCTG 1 cut(s) 241
SaqAI TTAA 1 cut(s) 374
SatI GCNGC 2 cut(s) 239, 287
Sau3AI GATC 3 cut(s) 8, 145, 385
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 20
SetI ASST 4 cut(s) 80, 153, 213, 243
SfaNI GCATC 4 cut(s) 13, 184, 263, 281
SfcI CTRYAG 1 cut(s) 96
Sse9I AATT 8 cut(s) 139, 165, 213, 245, 305, 332, 343, 371
SsiI CCGC 1 cut(s) 83
SspMI CTAG 1 cut(s) 391
StyD4I CCNGG 1 cut(s) 111
TaiI ACGT 1 cut(s) 153
TaqI TCGA 3 cut(s) 7, 14, 336
TasI AATT 8 cut(s) 139, 165, 213, 245, 305, 332, 343, 371
Tru1I TTAA 1 cut(s) 374
Tru9I TTAA 1 cut(s) 374
TseI GCWGC 2 cut(s) 238, 286
XapI RAATTY 2 cut(s) 139, 305
XspI CTAG 1 cut(s) 391
Zsp2I ATGCAT 2 cut(s) 6, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.