AT5G23860

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
8042853 .. 8044934
2082 bp
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UTR
Exon/CDS
Intron
AT5G23860.1

Sequence Viewer

Length: 1350 bp
ATGCGAGAGATTCTTCACATACAAGGTGGCCAATGCGGAAACCAGATCGGAGCTAAGTTCTGGGAAGTAGTTTGCGCCGAGCACGGGATCGATTCGACGGGAAGATACCAAGGAGAGAACGATTTGCAACTCGAACGAGTCAATGTCTACTACAACGAAGCGAGTTGCGGAAGATTCGTCCCACGCGCCGTCCTCATGGATCTAGAGCCTGGTACTATGGATAGTGTCAGATCCGGTCCGTACGGTCAGATCTTCCGTCCTGATAACTTCGTATTTGGTCAATCCGGTGCCGGTAACAATTGGGCTAAAGGACACTACACTGAAGGTGCTGAGCTTATCGATTCCGTTCTCGATGTTGTTCGTAAGGAAGCTGAGAATTGTGACTGCTTGCAAGGATTCCAAGTGTGTCACTCATTAGGAGGAGGAACTGGATCTGGAATGGGAACGTTGTTGATTTCAAAGATTAGGGAAGAGTATCCAGATAGGATGATGCTGACGTTTTCTGTATTCCCATCACCGAAAGTGTCAGACACTGTTGTTGAGCCTTATAATGCAACTCTCTCTGTTCATCAGCTTGTGGAGAATGCAGATGAGTGTATGGTTCTTGACAATGAAGCTCTCTATGACATTTGCTTCAGAACTCTTAAGCTCACCACTCCAAGCTTTGGAGACTTGAATCACCTCATCTCTGCAACCATGAGTGGTGTCACTTGCTGCCTTCGTTTCCCGGGTCAGCTAAACTCTGACCTGCGCAAGCTTGCAGTGAATTTAATCCCATTCCCTCGTCTCCACTTCTTCATGGTTGGGTTTGCACCACTCACATCTCGTGGATCACAGCAATACAGAGCCTTAACCGTCCCTGAGCTCACTCAACAGATGTGGGATGCCAAGAATATGATGTGTGCAGCTGATCCACGCCACGGCAGGTACTTGACAGCCTCAGCCATGTTCAGAGGCAAAATGAGCACGAAAGAAGTTGACGAACAGATGATCAACGTTCAGAACAAGAACTCGTCATACTTTGTGGAATGGATCCCAAACAACGTGAAATCAACCGTGTGTGACATTCCACCAACAGGTCTGAAAATGGCTTCGACTTTCATCGGGAACTCGACATCGATCCAGGAGATGTTTAGGCGTGTGAGCGAACAGTTCACAGCGATGTTCAGAAGAAAAGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGACGAGATGGAGTTCACAGAGGCAGAGAGCAACATGAATGATTTGGTATCAGAGTATCAACAGTACCAAGACGCAACGGCTGATGAGGAAGAAGGGTATGAGTATGAAGAAGACGAAGTGGAAGTGCAGGAGGAGCAATAA

Protein Analysis

449

Amino Acids

50.61

Weight (kDa)

4.74

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin PF00091 3 - 211 2.1e-64 Tubulin/FtsZ family, GTPase domain
Tubulin_C PF03953 261 - 382 1.8e-40 Tubulin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014908)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23860 AT5G23860
fragaria_vesca FvH4_7g29550
malus_domestica MD01G1201800.v1.1 MD07G1270800.v1.1
prunus_persica Prupe.2G295200_v2.0.a1
pyrus_communis pycom01g21150
rosa_chinensis RchiOBHm_Chr1g0377541
rosa_laevigata RLG00000026521
rosa_multiflora Rmu_sc0002832.1_g000005 Rmu_sc0012587.1_g000003
rosa_roxburghii Rroxscaffold_4G00281250
rosa_rugosa Rorug01G0403300
rosa_samantha Rh1CG394000 Rh1DG411000
rosa_wichuraiana Rw1G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 549
Acc16I TGCGCA 1 cut(s) 752
Acc36I ACCTGC 2 cut(s) 756, 915
AccB1I GGYRCC 1 cut(s) 287
AccB7I CCANNNNNTGG 1 cut(s) 665
AccI GTMKAC 1 cut(s) 147
AccII CGCG 1 cut(s) 186
AciI CCGC 2 cut(s) 36, 168
AclI AACGTT 2 cut(s) 446, 996
AclWI GGATC 9 cut(s) 95, 207, 225, 439, 838, 905, 1027, 1040, 1114
AcoI YGGCCR 1 cut(s) 28
AcsI RAATTY 1 cut(s) 766
AcuI CTGAAG 2 cut(s) 342, 619
AfaI GTAC 5 cut(s) 214, 242, 929, 1193, 1274
AfiI CCNNNNNNNGG 4 cut(s) 84, 665, 920, 1076
AflII CTTAAG 1 cut(s) 644
AgsI TTSAA 2 cut(s) 459, 676
AjnI CCWGG 2 cut(s) 208, 1122
Alw21I GWGCWC 3 cut(s) 84, 867, 968
Alw26I GTCTC 2 cut(s) 663, 791
AlwI GGATC 9 cut(s) 95, 207, 225, 439, 838, 905, 1027, 1040, 1114
AlwNI CAGNNNCTG 1 cut(s) 533
Ama87I CYCGRG 1 cut(s) 727
AoxI GGCC 1 cut(s) 28
ApeKI GCWGC 2 cut(s) 714, 905
ApoI RAATTY 1 cut(s) 766
AspLEI GCGC 3 cut(s) 77, 188, 753
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 2 cut(s) 728, 729
AsuHPI GGTGA 4 cut(s) 507, 643, 671, 1211
AvaI CYCGRG 1 cut(s) 727
AvaII GGWCC 1 cut(s) 236
BaeI ACNNNNGTAYC 2 cut(s) 1183, 1216
BalI TGGCCA 1 cut(s) 30
BamHI GGATCC 1 cut(s) 1032
BanI GGYRCC 1 cut(s) 287
BanII GRGCYC 1 cut(s) 867
BauI CACGAG 1 cut(s) 825
BbsI GAAGAC 1 cut(s) 1326
Bbv12I GWGCWC 3 cut(s) 84, 867, 968
BbvCI CCTCAGC 1 cut(s) 940
BbvI GCAGC 2 cut(s) 701, 917
BccI CCATC 2 cut(s) 520, 1210
BceAI ACGGC 3 cut(s) 173, 937, 1302
BciT130I CCWGG 2 cut(s) 210, 1124
BciVI GTATCC 1 cut(s) 486
BclI TGATCA 1 cut(s) 990
BcnI CCSGG 2 cut(s) 728, 729
BcoDI GTCTC 2 cut(s) 663, 791
BfaI CTAG 1 cut(s) 203
BfrI CTTAAG 1 cut(s) 644
BfuAI ACCTGC 2 cut(s) 756, 915
BfuI GTATCC 1 cut(s) 486
BglII AGATCT 1 cut(s) 249
BisI GCNGC 2 cut(s) 715, 906
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 2 cut(s) 716, 907
Bme1390I CCNGG 4 cut(s) 210, 728, 729, 1124
Bme18I GGWCC 1 cut(s) 236
BmeT110I CYCGRG 1 cut(s) 727
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 289, 1034
BmrFI CCNGG 4 cut(s) 210, 728, 729, 1124
BmsI GCATC 2 cut(s) 480, 874
BpiI GAAGAC 1 cut(s) 1326
Bpu10I CCTNAGC 2 cut(s) 861, 940
Bpu1102I GCTNAGC 1 cut(s) 330
BpuMI CCSGG 2 cut(s) 728, 729
Bsa29I ATCGAT 3 cut(s) 90, 339, 1118
BsaJI CCNNGG 3 cut(s) 109, 727, 919
BsaWI WCCGGW 2 cut(s) 233, 284
Bsc4I CCNNNNNNNGG 4 cut(s) 84, 665, 920, 1076
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 433
BseBI CCWGG 2 cut(s) 210, 1124
BseCI ATCGAT 3 cut(s) 90, 339, 1118
BseDI CCNNGG 3 cut(s) 109, 727, 919
BseGI GGATG 2 cut(s) 492, 889
BseLI CCNNNNNNNGG 4 cut(s) 84, 665, 920, 1076
BseMII CTCAG 4 cut(s) 321, 363, 852, 954
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 1 cut(s) 435
BseXI GCAGC 2 cut(s) 701, 917
BsgI GTGCAG 1 cut(s) 924
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 1 cut(s) 30
BshNI GGYRCC 1 cut(s) 287
BshVI ATCGAT 3 cut(s) 90, 339, 1118
BsiHKAI GWGCWC 3 cut(s) 84, 867, 968
BsiHKCI CYCGRG 1 cut(s) 727
BsiSI CCGG 4 cut(s) 234, 285, 291, 728
BsiWI CGTACG 1 cut(s) 240
BslFI GGGAC 2 cut(s) 164, 842
BslI CCNNNNNNNGG 4 cut(s) 84, 665, 920, 1076
BsmAI GTCTC 2 cut(s) 663, 791
BsmBI CGTCTC 1 cut(s) 791
BsmFI GGGAC 2 cut(s) 164, 842
BsmI GAATGC 1 cut(s) 589
BsnI GGCC 1 cut(s) 30
BsoBI CYCGRG 1 cut(s) 727
Bsp1286I GDGCHC 3 cut(s) 84, 867, 968
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 2 cut(s) 36, 168
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 4 cut(s) 322, 364, 853, 953
BspDI ATCGAT 3 cut(s) 90, 339, 1118
BspFNI CGCG 1 cut(s) 186
BspLI GGNNCC 2 cut(s) 289, 1034
BspMI ACCTGC 2 cut(s) 756, 915
BspPI GGATC 9 cut(s) 95, 207, 225, 439, 838, 905, 1027, 1040, 1114
BspT107I GGYRCC 1 cut(s) 287
BspTI CTTAAG 1 cut(s) 644
BsrFI RCCGGY 1 cut(s) 290
BsrI ACTGG 1 cut(s) 433
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 3 cut(s) 109, 727, 919
BssSI CACGAG 1 cut(s) 825
BssT1I CCWWGG 1 cut(s) 109
Bst2BI CACGAG 1 cut(s) 825
Bst2UI CCWGG 2 cut(s) 210, 1124
Bst4CI ACNGT 6 cut(s) 245, 535, 856, 1057, 1152, 1272
Bst6I CTCTTC 1 cut(s) 465
BstAFI CTTAAG 1 cut(s) 644
BstC8I GCNNGC 3 cut(s) 389, 755, 759
BstDEI CTNAG 5 cut(s) 54, 330, 372, 861, 940
BstDSI CCRYGG 1 cut(s) 919
BstF5I GGATG 2 cut(s) 492, 889
BstFNI CGCG 1 cut(s) 186
BstHHI GCGC 3 cut(s) 77, 188, 753
BstMAI GTCTC 2 cut(s) 663, 791
BstMWI GCNNNNNNNGC 2 cut(s) 963, 1342
BstNI CCWGG 2 cut(s) 210, 1124
BstSCI CCNGG 4 cut(s) 208, 726, 727, 1122
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 701, 917
BstV2I GAAGAC 1 cut(s) 1326
BstX2I RGATCY 5 cut(s) 199, 230, 249, 431, 1032
BstYI RGATCY 5 cut(s) 199, 230, 249, 431, 1032
Bsu15I ATCGAT 3 cut(s) 90, 339, 1118
BsuI GTATCC 1 cut(s) 486
BsuRI GGCC 1 cut(s) 30
BsuTUI ATCGAT 3 cut(s) 90, 339, 1118
BtgI CCRYGG 1 cut(s) 919
BtgZI GCGATG 1 cut(s) 1175
BtsCI GGATG 2 cut(s) 492, 889
BtsI GCAGTG 1 cut(s) 768
BtsIMutI CAGTG 3 cut(s) 318, 531, 768
BveI ACCTGC 2 cut(s) 756, 915
Cac8I GCNNGC 3 cut(s) 389, 755, 759
CaiI CAGNNNCTG 1 cut(s) 533
CfoI GCGC 3 cut(s) 77, 188, 753
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 1 cut(s) 236
Cfr9I CCCGGG 1 cut(s) 727
ClaI ATCGAT 3 cut(s) 90, 339, 1118
CpoI CGGWCCG 1 cut(s) 236
CseI GACGC 1 cut(s) 1289
Csp6I GTAC 5 cut(s) 213, 241, 928, 1192, 1273
CspCI CAANNNNNGTGG 2 cut(s) 860, 895
CspI CGGWCCG 1 cut(s) 236
CviAII CATG 5 cut(s) 196, 697, 799, 946, 1243
CviQI GTAC 5 cut(s) 213, 241, 928, 1192, 1273
DdeI CTNAG 5 cut(s) 54, 330, 372, 861, 940
EaeI YGGCCR 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
Ecl136II GAGCTC 1 cut(s) 865
Eco130I CCWWGG 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 867
Eco47I GGWCC 1 cut(s) 236
Eco53kI GAGCTC 1 cut(s) 865
Eco57I CTGAAG 2 cut(s) 342, 619
Eco88I CYCGRG 1 cut(s) 727
EcoICRI GAGCTC 1 cut(s) 865
EcoRII CCWGG 2 cut(s) 208, 1122
EcoT14I CCWWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 867
ErhI CCWWGG 1 cut(s) 109
Esp3I CGTCTC 1 cut(s) 791
FaeI CATG 5 cut(s) 199, 700, 802, 949, 1246
FalI AAGNNNNNCTT 2 cut(s) 1162, 1194
FaqI GGGAC 2 cut(s) 164, 842
FatI CATG 5 cut(s) 195, 696, 798, 945, 1242
FbaI TGATCA 1 cut(s) 990
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 715, 906
FokI GGATG 2 cut(s) 499, 896
FriOI GRGCYC 1 cut(s) 867
Fsp4HI GCNGC 2 cut(s) 715, 906
FspBI CTAG 1 cut(s) 203
FspI TGCGCA 1 cut(s) 752
GlaI GCGC 3 cut(s) 76, 187, 752
GluI GCNGC 2 cut(s) 715, 906
HaeIII GGCC 1 cut(s) 30
HapII CCGG 4 cut(s) 234, 285, 291, 728
HgaI GACGC 1 cut(s) 1289
HhaI GCGC 3 cut(s) 77, 188, 753
Hin1II CATG 5 cut(s) 199, 700, 802, 949, 1246
Hin6I GCGC 3 cut(s) 75, 186, 751
HinP1I GCGC 3 cut(s) 75, 186, 751
HincII GTYRAC 1 cut(s) 979
HindII GTYRAC 1 cut(s) 979
HindIII AAGCTT 3 cut(s) 661, 755, 1176
HinfI GANTC 7 cut(s) 10, 92, 138, 174, 341, 396, 676
HpaII CCGG 4 cut(s) 234, 285, 291, 728
HphI GGTGA 4 cut(s) 507, 643, 671, 1211
Hpy166II GTNNAC 5 cut(s) 148, 979, 1155, 1194, 1224
Hpy188III TCNNGA 7 cut(s) 203, 260, 350, 435, 479, 605, 1105
Hpy8I GTNNAC 5 cut(s) 148, 979, 1155, 1194, 1224
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 4 cut(s) 317, 728, 1196, 1295
HpyCH4III ACNGT 6 cut(s) 245, 535, 856, 1057, 1152, 1272
HpyCH4IV ACGT 4 cut(s) 446, 497, 996, 1044
HpyF10VI GCNNNNNNNGC 2 cut(s) 963, 1342
HpyF3I CTNAG 5 cut(s) 54, 330, 372, 861, 940
HpySE526I ACGT 4 cut(s) 446, 497, 996, 1044
Hsp92II CATG 5 cut(s) 199, 700, 802, 949, 1246
HspAI GCGC 3 cut(s) 75, 186, 751
Ksp22I TGATCA 1 cut(s) 990
LmnI GCTCC 2 cut(s) 50, 1342
Lsp1109I GCAGC 2 cut(s) 701, 917
LweI GCATC 2 cut(s) 480, 874
MaeI CTAG 1 cut(s) 203
MaeII ACGT 4 cut(s) 446, 497, 996, 1044
MaeIII GTNAC 5 cut(s) 293, 380, 407, 706, 1061
MfeI CAATTG 1 cut(s) 298
MflI RGATCY 5 cut(s) 199, 230, 249, 431, 1032
MhlI GDGCHC 3 cut(s) 84, 867, 968
MlsI TGGCCA 1 cut(s) 30
MluCI AATT 3 cut(s) 298, 376, 766
MluNI TGGCCA 1 cut(s) 30
MlyI GAGTC 1 cut(s) 147
Mox20I TGGCCA 1 cut(s) 30
MscI TGGCCA 1 cut(s) 30
MseI TTAA 3 cut(s) 645, 770, 851
MslI CAYNNNNRTG 1 cut(s) 1160
Msp20I TGGCCA 1 cut(s) 30
MspA1I CMGCKG 1 cut(s) 908
MspCI CTTAAG 1 cut(s) 644
MspI CCGG 4 cut(s) 234, 285, 291, 728
MspR9I CCNGG 4 cut(s) 210, 728, 729, 1124
MunI CAATTG 1 cut(s) 298
Mva1269I GAATGC 1 cut(s) 589
MvaI CCWGG 2 cut(s) 210, 1124
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 963, 1342
NciI CCSGG 2 cut(s) 728, 729
NlaIII CATG 5 cut(s) 199, 700, 802, 949, 1246
NlaIV GGNNCC 2 cut(s) 289, 1034
NmeAIII GCCGAG 1 cut(s) 103
NmuCI GTSAC 4 cut(s) 380, 407, 706, 1061
NsbI TGCGCA 1 cut(s) 752
PctI GAATGC 1 cut(s) 589
PfeI GAWTC 6 cut(s) 10, 92, 174, 341, 396, 676
Pfl23II CGTACG 1 cut(s) 240
PflMI CCANNNNNTGG 1 cut(s) 665
PfoI TCCNGGA 1 cut(s) 1122
PkrI GCNGC 2 cut(s) 716, 907
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PsiI TTATAA 1 cut(s) 549
Psp124BI GAGCTC 1 cut(s) 867
Psp1406I AACGTT 2 cut(s) 446, 996
Psp6I CCWGG 2 cut(s) 208, 1122
PspGI CCWGG 2 cut(s) 208, 1122
PspLI CGTACG 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 289, 1034
PspPI GGNCC 1 cut(s) 236
PsrI GAACNNNNNNTAC 2 cut(s) 1001, 1033
PstNI CAGNNNCTG 1 cut(s) 533
PsuI RGATCY 5 cut(s) 199, 230, 249, 431, 1032
PvuII CAGCTG 1 cut(s) 908
RsaI GTAC 5 cut(s) 214, 242, 929, 1193, 1274
RsaNI GTAC 5 cut(s) 213, 241, 928, 1192, 1273
RseI CAYNNNNRTG 1 cut(s) 1160
Rsr2I CGGWCCG 1 cut(s) 236
RsrII CGGWCCG 1 cut(s) 236
SacI GAGCTC 1 cut(s) 867
SaqAI TTAA 3 cut(s) 645, 770, 851
SatI GCNGC 2 cut(s) 715, 906
Sau96I GGNCC 1 cut(s) 236
SchI GAGTC 1 cut(s) 147
ScrFI CCNGG 4 cut(s) 210, 728, 729, 1124
SduI GDGCHC 3 cut(s) 84, 867, 968
SfaNI GCATC 2 cut(s) 480, 874
SinI GGWCC 1 cut(s) 236
SmaI CCCGGG 1 cut(s) 729
SmiMI CAYNNNNRTG 1 cut(s) 1160
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
Sse9I AATT 3 cut(s) 298, 376, 766
SsiI CCGC 2 cut(s) 36, 168
SspMI CTAG 1 cut(s) 203
SstI GAGCTC 1 cut(s) 867
StyD4I CCNGG 4 cut(s) 208, 726, 727, 1122
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 6 cut(s) 245, 535, 856, 1057, 1152, 1272
TaiI ACGT 4 cut(s) 449, 500, 999, 1047
TaqI TCGA 8 cut(s) 90, 95, 132, 339, 351, 1094, 1112, 1118
TasI AATT 3 cut(s) 298, 376, 766
TfiI GAWTC 6 cut(s) 10, 92, 174, 341, 396, 676
Tru1I TTAA 3 cut(s) 645, 770, 851
Tru9I TTAA 3 cut(s) 645, 770, 851
TscAI CASTG 3 cut(s) 325, 538, 768
TseFI GTSAC 4 cut(s) 380, 407, 706, 1061
TseI GCWGC 2 cut(s) 714, 905
Tsp45I GTSAC 4 cut(s) 380, 407, 706, 1061
TspDTI ATGAA 6 cut(s) 557, 627, 787, 1090, 1259, 1329
TspGWI ACGGA 3 cut(s) 228, 245, 334
TspMI CCCGGG 1 cut(s) 727
TspRI CASTG 3 cut(s) 325, 538, 768
Van91I CCANNNNNTGG 1 cut(s) 665
Vha464I CTTAAG 1 cut(s) 644
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 1 cut(s) 766
XbaI TCTAGA 1 cut(s) 202
XmaI CCCGGG 1 cut(s) 727
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.