AT5G24590
NAC Family

(NAC) domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
8416375 .. 8419076
2702 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24590.2

Sequence Viewer

Length: 1356 bp
ATGAAAGAAGACATGGAAGTACTATCGCTCGCTTCACTACCGGTTGGGTTCAGATTTAGTCCAACGGACGAAGAGTTAGTCCGGTACTATCTCCGGCTCAAGATCAACGGTCACGATAACGACGTTAGAGTAATTCGTGAGATCGATATCTGCAAATGGGAGCCTTGGGATTTGCCTGATTTTTCTGTGGTGAAGACAACAGACTCAGAGTGGCTCTTCTTTTGTCCTTTGGACCGGAAATATCCGAGTGGAAGTCGAATGAATAGAGCTACTGTGGCTGGATACTGGAAGGCGACGGGAAAAGACCGTAAGATCAAATCAGGAAAGACTAAGATTATAGGTGTTAAGAGGACTCTAGTGTTTTATACAGGTCGTGCTCCTAAAGGGACACGAACTTGTTGGATTATGCATGAGTATCGTGCTACTGAGAAGGATCTTGATGGAACAAAGTCTGGCCAGAATCCGTTTGTTGTTTGTAAGTTGTTTAAGAAGCAAGATATTGTGAACGGAGCTGCTGAACCAGAAGAGTCAAAGTCATGTGAAGTTGAACCAGCGGTATCGTCTCCAACTGTTGTGGACGAGGTTGAAATGTCTGAGGTATCTCCTGTTTTCCCTAAAACAGAAGAGACTAATCCTTGTGACGTCGCAGAGTCTTCTCTTGTAATCCCCAGCGAATGTCGTAGTGGATACTCTGTCCCTGAGGTTACAACCACCGGGCTTGACGATATCGATTGGCTCTCGTTTATGGAGTTTGATTCCCCGAAGCTGTTCTCTCCGTTGCACTCTCAGGTGCAATCTGAGCTCGGTTCCTCTTTCAATGGCTTACAATCTGAGTCTAGTGAATTGTTCAAAAACCACAATGAGGATTACATTCAGACTCAGTACGGTACAAATGATGCGGATGAATATATGTCCAAGTTCTTGGATTCTTTTCTTGACATTCCCTATGAGCCAGAACAGATCCCATATGAGCCACAGAATCTTAGCTCATGCAACAAGATCAATGATGAATCTAAGAGAGGAATTAAGATTAGAGCTCGACGAGCACAAGCCCCGGGTTGTGCTGAGCAGTTTGTAATGCAGGGCGATGCCTCAAGAAGGCTGCGTCTTCAGGTTAACCTTAACAGCCACAAGTCAGAAACTGACAGTACACAACTTCAATTTATCAAGAAAGAGGTTAAGGACACAACAACGGAAACTATGACGAAAGGATGTGGAAATTTCACAAGATCAAAGAGCAGGACTAGTTTCATATTCAAGAAAATTGCAGCCATGGGATGTTCATACAGAGGGCTTTTCAGAGTCGGTGTGGTAGCGGTTGTGTGTGTGATGTCGGTCTGCAGTCTAGTCGCATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

451

Amino Acids

50.89

Weight (kDa)

5.8

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 140 1.1e-45 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 645
AciI CCGC 3 cut(s) 554, 899, 1316
AclWI GGATC 2 cut(s) 441, 955
AcoI YGGCCR 1 cut(s) 454
AcsI RAATTY 1 cut(s) 1219
AcuI CTGAAG 1 cut(s) 1094
AcyI GRCGYC 1 cut(s) 642
AfaI GTAC 5 cut(s) 21, 86, 884, 889, 1150
AfiI CCNNNNNNNGG 2 cut(s) 862, 1098
AgeI ACCGGT 1 cut(s) 40
AgsI TTSAA 6 cut(s) 548, 587, 817, 850, 1160, 1258
AhlI ACTAGT 1 cut(s) 1244
AluBI AGCT 6 cut(s) 269, 512, 766, 802, 987, 1037
AluI AGCT 6 cut(s) 269, 512, 766, 802, 987, 1037
Alw21I GWGCWC 4 cut(s) 379, 804, 1039, 1048
Alw26I GTCTC 2 cut(s) 567, 620
AlwI GGATC 2 cut(s) 441, 955
AlwNI CAGNNNCTG 1 cut(s) 1142
Ama87I CYCGRG 1 cut(s) 1054
AoxI GGCC 1 cut(s) 454
ApeKI GCWGC 3 cut(s) 512, 1102, 1268
ApoI RAATTY 1 cut(s) 1219
ArsI GACNNNNNNTTYG 2 cut(s) 63, 95
AsiGI ACCGGT 1 cut(s) 40
Asp700I GAANNNNTTC 1 cut(s) 767
AspS9I GGNCC 1 cut(s) 232
AsuC2I CCSGG 3 cut(s) 715, 1055, 1056
AsuHPI GGTGA 1 cut(s) 202
AvaI CYCGRG 1 cut(s) 1054
AvaII GGWCC 1 cut(s) 232
AxyI CCTNAGG 1 cut(s) 699
BalI TGGCCA 1 cut(s) 456
BanII GRGCYC 2 cut(s) 804, 1039
BbsI GAAGAC 4 cut(s) 15, 200, 645, 1100
Bbv12I GWGCWC 4 cut(s) 379, 804, 1039, 1048
BbvI GCAGC 3 cut(s) 499, 1089, 1280
BccI CCATC 1 cut(s) 434
BcgI CGANNNNNNTGC 3 cut(s) 398, 432, 1330
BciVI GTATCC 2 cut(s) 275, 680
BcnI CCSGG 3 cut(s) 715, 1055, 1056
BcoDI GTCTC 2 cut(s) 567, 620
BcuI ACTAGT 1 cut(s) 1244
BfaI CTAG 4 cut(s) 356, 837, 1245, 1346
BfmI CTRYAG 1 cut(s) 1339
BfuI GTATCC 2 cut(s) 275, 680
BisI GCNGC 3 cut(s) 513, 1103, 1269
BlpI GCTNAGC 1 cut(s) 1065
BlsI GCNGC 3 cut(s) 514, 1104, 1270
BmcAI AGTACT 1 cut(s) 21
Bme1390I CCNGG 3 cut(s) 715, 1055, 1056
Bme18I GGWCC 1 cut(s) 232
BmeT110I CYCGRG 1 cut(s) 1054
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 162, 808
BmrFI CCNGG 3 cut(s) 715, 1055, 1056
BmsI GCATC 2 cut(s) 886, 1078
BpiI GAAGAC 4 cut(s) 15, 200, 645, 1100
Bpu1102I GCTNAGC 1 cut(s) 1065
BpuEI CTTGAG 2 cut(s) 83, 1078
BpuMI CCSGG 3 cut(s) 715, 1055, 1056
Bsa29I ATCGAT 2 cut(s) 144, 729
BsaBI GATNNNNATC 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 642
BsaJI CCNNGG 4 cut(s) 164, 1053, 1054, 1272
BsaWI WCCGGW 3 cut(s) 40, 81, 234
Bsc4I CCNNNNNNNGG 2 cut(s) 862, 1098
Bse118I RCCGGY 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 290
Bse21I CCTNAGG 1 cut(s) 699
Bse8I GATNNNNATC 1 cut(s) 146
BseCI ATCGAT 2 cut(s) 144, 729
BseDI CCNNGG 4 cut(s) 164, 1053, 1054, 1272
BseGI GGATG 3 cut(s) 907, 1217, 1283
BseJI GATNNNNATC 1 cut(s) 146
BseLI CCNNNNNNNGG 2 cut(s) 862, 1098
BseMII CTCAG 9 cut(s) 219, 417, 585, 690, 789, 800, 822, 893, 1056
BseNI ACTGG 1 cut(s) 290
BseXI GCAGC 3 cut(s) 499, 1089, 1280
BseYI CCCAGC 1 cut(s) 668
BshFI GGCC 1 cut(s) 456
BshTI ACCGGT 1 cut(s) 40
BshVI ATCGAT 2 cut(s) 144, 729
BsiHKAI GWGCWC 4 cut(s) 379, 804, 1039, 1048
BsiHKCI CYCGRG 1 cut(s) 1054
BsiSI CCGG 6 cut(s) 41, 82, 94, 235, 714, 1055
BslFI GGGAC 2 cut(s) 400, 680
BslI CCNNNNNNNGG 2 cut(s) 862, 1098
BsmAI GTCTC 2 cut(s) 567, 620
BsmBI CGTCTC 1 cut(s) 567
BsmFI GGGAC 2 cut(s) 400, 680
BsnI GGCC 1 cut(s) 456
BsoBI CYCGRG 1 cut(s) 1054
Bsp1286I GDGCHC 4 cut(s) 379, 804, 1039, 1048
Bsp143I GATC 7 cut(s) 102, 141, 312, 433, 960, 999, 1229
Bsp1720I GCTNAGC 1 cut(s) 1065
Bsp19I CCATGG 1 cut(s) 1272
BspACI CCGC 3 cut(s) 554, 899, 1316
BspANI GGCC 1 cut(s) 456
BspCNI CTCAG 9 cut(s) 218, 418, 586, 691, 790, 799, 823, 892, 1057
BspDI ATCGAT 2 cut(s) 144, 729
BspLI GGNNCC 2 cut(s) 162, 808
BspMAI CTGCAG 1 cut(s) 1343
BspPI GGATC 2 cut(s) 441, 955
BspQI GCTCTTC 1 cut(s) 221
BsrFI RCCGGY 1 cut(s) 40
BsrI ACTGG 1 cut(s) 290
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 4 cut(s) 164, 1053, 1054, 1272
BssMI GATC 7 cut(s) 102, 141, 312, 433, 960, 999, 1229
BssNI GRCGYC 1 cut(s) 642
BssT1I CCWWGG 2 cut(s) 164, 1272
Bst4CI ACNGT 6 cut(s) 110, 274, 308, 571, 887, 1148
Bst6I CTCTTC 4 cut(s) 66, 221, 519, 618
BstACI GRCGYC 1 cut(s) 642
BstC8I GCNNGC 1 cut(s) 30
BstDSI CCRYGG 1 cut(s) 1272
BstENI CCTNNNNNAGG 1 cut(s) 1096
BstF5I GGATG 3 cut(s) 907, 1217, 1283
BstKTI GATC 7 cut(s) 105, 144, 315, 436, 963, 1002, 1232
BstMAI GTCTC 2 cut(s) 567, 620
BstMBI GATC 7 cut(s) 102, 141, 312, 433, 960, 999, 1229
BstMWI GCNNNNNNNGC 3 cut(s) 275, 799, 1043
BstSCI CCNGG 3 cut(s) 713, 1053, 1054
BstSFI CTRYAG 1 cut(s) 1339
BstV1I GCAGC 3 cut(s) 499, 1089, 1280
BstV2I GAAGAC 4 cut(s) 15, 200, 645, 1100
BstX2I RGATCY 2 cut(s) 433, 960
BstXI CCANNNNNNTGG 1 cut(s) 922
BstYI RGATCY 2 cut(s) 433, 960
Bsu15I ATCGAT 2 cut(s) 144, 729
Bsu36I CCTNAGG 1 cut(s) 699
BsuI GTATCC 2 cut(s) 275, 680
BsuRI GGCC 1 cut(s) 456
BsuTUI ATCGAT 2 cut(s) 144, 729
BtgI CCRYGG 1 cut(s) 1272
BtgZI GCGATG 1 cut(s) 1101
BtsCI GGATG 3 cut(s) 907, 1217, 1283
Cac8I GCNNGC 1 cut(s) 30
CaiI CAGNNNCTG 1 cut(s) 1142
Cfr10I RCCGGY 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 232
Cfr9I CCCGGG 1 cut(s) 1054
ClaI ATCGAT 2 cut(s) 144, 729
CseI GACGC 1 cut(s) 1094
Csp6I GTAC 5 cut(s) 20, 85, 883, 888, 1149
CspAI ACCGGT 1 cut(s) 40
CspCI CAANNNNNGTGG 4 cut(s) 555, 590, 700, 735
CviAII CATG 5 cut(s) 13, 410, 537, 990, 1273
CviQI GTAC 5 cut(s) 20, 85, 883, 888, 1149
DpnI GATC 7 cut(s) 104, 143, 314, 435, 962, 1001, 1231
DpnII GATC 7 cut(s) 102, 141, 312, 433, 960, 999, 1229
EaeI YGGCCR 1 cut(s) 454
Eam1104I CTCTTC 4 cut(s) 66, 221, 519, 618
EarI CTCTTC 4 cut(s) 66, 221, 519, 618
Ecl136II GAGCTC 2 cut(s) 802, 1037
Eco130I CCWWGG 2 cut(s) 164, 1272
Eco24I GRGCYC 2 cut(s) 804, 1039
Eco32I GATATC 2 cut(s) 148, 727
Eco47I GGWCC 1 cut(s) 232
Eco53kI GAGCTC 2 cut(s) 802, 1037
Eco57I CTGAAG 1 cut(s) 1094
Eco81I CCTNAGG 1 cut(s) 699
Eco88I CYCGRG 1 cut(s) 1054
EcoICRI GAGCTC 2 cut(s) 802, 1037
EcoNI CCTNNNNNAGG 1 cut(s) 1096
EcoRV GATATC 2 cut(s) 148, 727
EcoT14I CCWWGG 2 cut(s) 164, 1272
EcoT22I ATGCAT 1 cut(s) 411
EcoT38I GRGCYC 2 cut(s) 804, 1039
ErhI CCWWGG 2 cut(s) 164, 1272
Esp3I CGTCTC 1 cut(s) 567
FaeI CATG 5 cut(s) 16, 413, 540, 993, 1276
FaqI GGGAC 2 cut(s) 400, 680
FatI CATG 5 cut(s) 12, 409, 536, 989, 1272
FauNDI CATATG 1 cut(s) 967
Fnu4HI GCNGC 3 cut(s) 513, 1103, 1269
FokI GGATG 3 cut(s) 914, 1224, 1290
FriOI GRGCYC 2 cut(s) 804, 1039
Fsp4HI GCNGC 3 cut(s) 513, 1103, 1269
FspBI CTAG 4 cut(s) 356, 837, 1245, 1346
GluI GCNGC 3 cut(s) 513, 1103, 1269
GsaI CCCAGC 1 cut(s) 672
HaeIII GGCC 1 cut(s) 456
HapII CCGG 6 cut(s) 41, 82, 94, 235, 714, 1055
HgaI GACGC 1 cut(s) 1094
Hin1I GRCGYC 1 cut(s) 642
Hin1II CATG 5 cut(s) 16, 413, 540, 993, 1276
HincII GTYRAC 1 cut(s) 1117
HindII GTYRAC 1 cut(s) 1117
HpaI GTTAAC 1 cut(s) 1117
HpaII CCGG 6 cut(s) 41, 82, 94, 235, 714, 1055
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 4 cut(s) 505, 577, 1117, 1151
Hpy188I TCNGA 9 cut(s) 53, 208, 246, 595, 799, 832, 876, 1138, 1301
Hpy188III TCNNGA 9 cut(s) 100, 113, 137, 321, 437, 935, 1095, 1168, 1258
Hpy8I GTNNAC 4 cut(s) 505, 577, 1117, 1151
Hpy99I CGWCG 4 cut(s) 125, 298, 647, 1044
HpyAV CCTTC 3 cut(s) 283, 424, 1092
HpyCH4III ACNGT 6 cut(s) 110, 274, 308, 571, 887, 1148
HpyCH4IV ACGT 2 cut(s) 123, 642
HpyCH4V TGCA 8 cut(s) 153, 409, 781, 793, 993, 1081, 1268, 1341
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 799, 1043
HpySE526I ACGT 2 cut(s) 123, 642
Hsp92I GRCGYC 1 cut(s) 642
Hsp92II CATG 5 cut(s) 16, 413, 540, 993, 1276
KspAI GTTAAC 1 cut(s) 1117
Kzo9I GATC 7 cut(s) 102, 141, 312, 433, 960, 999, 1229
LguI GCTCTTC 1 cut(s) 221
LmnI GCTCC 3 cut(s) 160, 382, 509
Lsp1109I GCAGC 3 cut(s) 499, 1089, 1280
LweI GCATC 2 cut(s) 886, 1078
MaeI CTAG 4 cut(s) 356, 837, 1245, 1346
MaeII ACGT 2 cut(s) 123, 642
MaeIII GTNAC 3 cut(s) 110, 638, 703
MalI GATC 7 cut(s) 104, 143, 314, 435, 962, 1001, 1231
MboI GATC 7 cut(s) 102, 141, 312, 433, 960, 999, 1229
MboII GAAGA 8 cut(s) 20, 83, 205, 208, 536, 635, 645, 1100
MflI RGATCY 2 cut(s) 433, 960
MhlI GDGCHC 4 cut(s) 379, 804, 1039, 1048
MlsI TGGCCA 1 cut(s) 456
MluCI AATT 6 cut(s) 132, 842, 1023, 1160, 1219, 1263
MluNI TGGCCA 1 cut(s) 456
MlyI GAGTC 7 cut(s) 197, 346, 536, 659, 842, 871, 1311
MmeI TCCRAC 3 cut(s) 86, 380, 590
Mox20I TGGCCA 1 cut(s) 456
Mph1103I ATGCAT 1 cut(s) 411
MroXI GAANNNNTTC 1 cut(s) 767
MscI TGGCCA 1 cut(s) 456
MseI TTAA 6 cut(s) 345, 486, 1026, 1116, 1122, 1179
Msp20I TGGCCA 1 cut(s) 456
MspA1I CMGCKG 1 cut(s) 554
MspI CCGG 6 cut(s) 41, 82, 94, 235, 714, 1055
MspR9I CCNGG 3 cut(s) 715, 1055, 1056
MwoI GCNNNNNNNGC 3 cut(s) 275, 799, 1043
NciI CCSGG 3 cut(s) 715, 1055, 1056
NcoI CCATGG 1 cut(s) 1272
NdeI CATATG 1 cut(s) 967
NdeII GATC 7 cut(s) 102, 141, 312, 433, 960, 999, 1229
NlaIII CATG 5 cut(s) 16, 413, 540, 993, 1276
NlaIV GGNNCC 2 cut(s) 162, 808
NmuCI GTSAC 2 cut(s) 110, 638
NsiI ATGCAT 1 cut(s) 411
PciSI GCTCTTC 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 767
PfeI GAWTC 5 cut(s) 460, 755, 926, 979, 1010
PinAI ACCGGT 1 cut(s) 40
PkrI GCNGC 3 cut(s) 514, 1104, 1270
PleI GAGTC 7 cut(s) 197, 346, 535, 658, 841, 871, 1310
PpsI GAGTC 7 cut(s) 197, 346, 535, 658, 841, 871, 1310
Psp124BI GAGCTC 2 cut(s) 804, 1039
PspFI CCCAGC 1 cut(s) 668
PspN4I GGNNCC 2 cut(s) 162, 808
PspPI GGNCC 1 cut(s) 232
PstI CTGCAG 1 cut(s) 1343
PstNI CAGNNNCTG 1 cut(s) 1142
PsuI RGATCY 2 cut(s) 433, 960
RsaI GTAC 5 cut(s) 21, 86, 884, 889, 1150
RsaNI GTAC 5 cut(s) 20, 85, 883, 888, 1149
SacI GAGCTC 2 cut(s) 804, 1039
SapI GCTCTTC 1 cut(s) 221
SaqAI TTAA 6 cut(s) 345, 486, 1026, 1116, 1122, 1179
SatI GCNGC 3 cut(s) 513, 1103, 1269
Sau3AI GATC 7 cut(s) 102, 141, 312, 433, 960, 999, 1229
Sau96I GGNCC 1 cut(s) 232
ScaI AGTACT 1 cut(s) 21
SchI GAGTC 7 cut(s) 197, 346, 536, 659, 842, 871, 1311
ScrFI CCNGG 3 cut(s) 715, 1055, 1056
SduI GDGCHC 4 cut(s) 379, 804, 1039, 1048
SfaNI GCATC 2 cut(s) 886, 1078
SfcI CTRYAG 1 cut(s) 1339
SinI GGWCC 1 cut(s) 232
SmaI CCCGGG 1 cut(s) 1056
SmlI CTYRAG 2 cut(s) 98, 1093
SmoI CTYRAG 2 cut(s) 98, 1093
SpeI ACTAGT 1 cut(s) 1244
Sse9I AATT 6 cut(s) 132, 842, 1023, 1160, 1219, 1263
SsiI CCGC 3 cut(s) 554, 899, 1316
SspMI CTAG 4 cut(s) 356, 837, 1245, 1346
SstI GAGCTC 2 cut(s) 804, 1039
StyD4I CCNGG 3 cut(s) 713, 1053, 1054
StyI CCWWGG 2 cut(s) 164, 1272
TaaI ACNGT 6 cut(s) 110, 274, 308, 571, 887, 1148
TaiI ACGT 2 cut(s) 126, 645
TaqI TCGA 4 cut(s) 144, 256, 729, 1039
TaqII GACCGA 1 cut(s) 1324
TasI AATT 6 cut(s) 132, 842, 1023, 1160, 1219, 1263
TatI WGTACW 2 cut(s) 19, 1148
TfiI GAWTC 5 cut(s) 460, 755, 926, 979, 1010
Tru1I TTAA 6 cut(s) 345, 486, 1026, 1116, 1122, 1179
Tru9I TTAA 6 cut(s) 345, 486, 1026, 1116, 1122, 1179
TseFI GTSAC 2 cut(s) 110, 638
TseI GCWGC 3 cut(s) 512, 1102, 1268
Tsp45I GTSAC 2 cut(s) 110, 638
TspDTI ATGAA 6 cut(s) 17, 275, 918, 1023, 1240, 1272
TspGWI ACGGA 5 cut(s) 80, 453, 522, 765, 1208
TspMI CCCGGG 1 cut(s) 1054
VpaK11BI GGWCC 1 cut(s) 232
XagI CCTNNNNNAGG 1 cut(s) 1096
XapI RAATTY 1 cut(s) 1219
XmaI CCCGGG 1 cut(s) 1054
XmnI GAANNNNTTC 1 cut(s) 767
XspI CTAG 4 cut(s) 356, 837, 1245, 1346
ZraI GACGTC 1 cut(s) 643
ZrmI AGTACT 1 cut(s) 21
Zsp2I ATGCAT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.