Rh1AG464100
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
67980566 .. 67983871
3306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG464100.1

Sequence Viewer

Length: 1119 bp
ATGGTGATGGATATGGGAGTGGTGTCTCTGTCCTCTCTGCCTCTGGGATTCAGATTCAGGCCAACGGATGAGGAGCTGATTGATTTTTATCTGAGATCGAAAATCAATGGAAATCATAAACAAGTCAGCGTTATTCGGGCAATTGATGTTTGCAAATGGGAGCCCTGGGATTTGCCTGATTTGTCAGTGATACAGACACAGGATCCGGAGTGGTTCTTCTTCTGTCCACAGGACAAGAAGTACCCAAATGGGTTCAGGTTGAACAGGGCTACAAGTGCAGGGTACTGGAAGGCCACCGGTAAAGATCGTAGAATCAAGTCTGGAGCAAACTTGGTTGGAATGAAAAAGACCCTGGTCTTCCATACTGGGCGTGCTCCCAAGGGTAAGAGGACGAATTGGGTTATGCACGAGTACCGTGCTACGCAGCAGGAGCTTGATGGCACTCATCCTGGCCAGAGTCCTTTTGTCCTTTGTCGTCTGTTTAAAAAACAAGATGAGAGTATCGAAATTTCAAACTGTGATGAAACTGAACCAGCTGTATCCTCCCCTAGCGTTGTCAAATCTCCTCTTGAAGACACGCAGTCTGCTCAAGCACTGCTTCCACCATCACCATCATGTCAAGTGCAACCTGAAAAGCTTCCTACTAGAGCAGAATGTACTAATGCCGATAATTATGATGGGATGGCATCAGACCCTCTACCAATTAGTGAGTGCCCTAGCAACAGCTGCAATGATTATGATGGACCAGGTCAACTGGATCTGCCGCTCGAGGAATATTTAAGCAGATTTTATGACCCTGAGGAAGAGCCACTTTTTCCCCCTATGCACTCACATATGGAAGTGGAGCATTGTTACCCTGGTAGCATTGGCTTAAACAATGGTCATAGAGGGTTGCAGTTTCCTAATGACAGCAATGATCAAGATGCAGAAATTTCTGAGTTCCTGAGCACAATATTCAACAGTTCAGAGGAATGCTCCTTCGAAGATTTGGACACTCAGATTTGTGAGACCAAGAATGTTGTCTCCATTAAGGACTATGGATCATGCAATGATGCAGACGCAAAACTGAATGAAGTACTGGTGAGTAGAAGCTTTCAAGATAATTTTCTTTTTTCATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

372

Amino Acids

41.92

Weight (kDa)

4.74

Isoelectric Point (pI)

58.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 139 5.1e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 766
AccIII TCCGGA 1 cut(s) 205
AciI CCGC 1 cut(s) 764
AclWI GGATC 4 cut(s) 197, 210, 765, 1048
AcoI YGGCCR 1 cut(s) 451
AcsI RAATTY 2 cut(s) 507, 930
AfaI GTAC 5 cut(s) 242, 284, 413, 658, 1077
AgeI ACCGGT 1 cut(s) 296
AgsI TTSAA 5 cut(s) 262, 513, 572, 958, 1097
AhdI GACNNNNNGTC 1 cut(s) 580
AjnI CCWGG 5 cut(s) 164, 351, 448, 745, 856
AluBI AGCT 6 cut(s) 76, 433, 536, 637, 726, 1092
AluI AGCT 6 cut(s) 76, 433, 536, 637, 726, 1092
Alw21I GWGCWC 2 cut(s) 376, 950
Alw26I GTCTC 3 cut(s) 30, 1001, 1027
AlwI GGATC 4 cut(s) 197, 210, 765, 1048
Ama87I CYCGRG 1 cut(s) 767
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 3 cut(s) 59, 291, 451
ApeKI GCWGC 2 cut(s) 424, 726
ApoI RAATTY 2 cut(s) 507, 930
AsiGI ACCGGT 1 cut(s) 296
Asp700I GAANNNNTTC 1 cut(s) 636
AspS9I GGNCC 1 cut(s) 743
AsuHPI GGTGA 3 cut(s) 16, 600, 1093
AsuII TTCGAA 1 cut(s) 981
AvaI CYCGRG 1 cut(s) 767
AvaII GGWCC 1 cut(s) 743
AxyI CCTNAGG 1 cut(s) 798
BaeGI GKGCMC 1 cut(s) 716
BalI TGGCCA 1 cut(s) 453
BamHI GGATCC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 165
BauI CACGAG 1 cut(s) 407
BbsI GAAGAC 2 cut(s) 349, 579
Bbv12I GWGCWC 2 cut(s) 376, 950
BbvI GCAGC 2 cut(s) 436, 713
BccI CCATC 6 cut(s) 431, 613, 619, 671, 676, 734
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 5 cut(s) 166, 353, 450, 747, 858
BciVI GTATCC 1 cut(s) 550
BclI TGATCA 1 cut(s) 916
BcoDI GTCTC 3 cut(s) 30, 1001, 1027
BfaI CTAG 3 cut(s) 549, 645, 717
BfuI GTATCC 1 cut(s) 550
BisI GCNGC 3 cut(s) 425, 727, 764
BlsI GCNGC 3 cut(s) 426, 728, 765
BmcAI AGTACT 1 cut(s) 1077
Bme1390I CCNGG 5 cut(s) 166, 353, 450, 747, 858
Bme18I GGWCC 1 cut(s) 743
BmeRI GACNNNNNGTC 1 cut(s) 580
BmeT110I CYCGRG 1 cut(s) 767
BmgT120I GGNCC 1 cut(s) 743
BmiI GGNNCC 2 cut(s) 162, 204
BmrFI CCNGG 5 cut(s) 166, 353, 450, 747, 858
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 3 cut(s) 695, 913, 1042
BmuI ACTGGG 1 cut(s) 375
BoxI GACNNNNGTC 1 cut(s) 353
BpiI GAAGAC 2 cut(s) 349, 579
BplI GAGNNNNNCTC 2 cut(s) 959, 991
BpmI CTGGAG 1 cut(s) 342
Bpu10I CCTNAGC 1 cut(s) 944
Bpu14I TTCGAA 1 cut(s) 981
BpuEI CTTGAG 1 cut(s) 573
BsaBI GATNNNNATC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 1001
BsaJI CCNNGG 5 cut(s) 164, 165, 351, 378, 856
BsaWI WCCGGW 2 cut(s) 205, 296
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 4 cut(s) 290, 370, 759, 1083
Bse21I CCTNAGG 1 cut(s) 798
Bse3DI GCAATG 3 cut(s) 736, 919, 1054
Bse8I GATNNNNATC 1 cut(s) 87
BseAI TCCGGA 1 cut(s) 205
BseBI CCWGG 5 cut(s) 166, 353, 450, 747, 858
BseDI CCNNGG 5 cut(s) 164, 165, 351, 378, 856
BseGI GGATG 3 cut(s) 73, 445, 687
BseJI GATNNNNATC 1 cut(s) 87
BseMI GCAATG 3 cut(s) 736, 919, 1054
BseMII CTCAG 5 cut(s) 83, 789, 927, 935, 1010
BseNI ACTGG 4 cut(s) 290, 370, 759, 1083
BseRI GAGGAG 2 cut(s) 86, 555
BseSI GKGCMC 1 cut(s) 716
BseXI GCAGC 2 cut(s) 436, 713
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 3 cut(s) 61, 293, 453
BshTI ACCGGT 1 cut(s) 296
BsiHKAI GWGCWC 2 cut(s) 376, 950
BsiHKCI CYCGRG 1 cut(s) 767
BsiSI CCGG 2 cut(s) 206, 297
BsmAI GTCTC 3 cut(s) 30, 1001, 1027
BsmI GAATGC 1 cut(s) 977
BsnI GGCC 3 cut(s) 61, 293, 453
Bso31I GGTCTC 1 cut(s) 1001
BsoBI CYCGRG 1 cut(s) 767
Bsp119I TTCGAA 1 cut(s) 981
Bsp1286I GDGCHC 4 cut(s) 165, 376, 716, 950
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 6 cut(s) 95, 202, 304, 757, 916, 1040
BspACI CCGC 1 cut(s) 764
BspANI GGCC 3 cut(s) 61, 293, 453
BspCNI CTCAG 5 cut(s) 84, 790, 928, 936, 1009
BspEI TCCGGA 1 cut(s) 205
BspHI TCATGA 1 cut(s) 1115
BspLI GGNNCC 2 cut(s) 162, 204
BspPI GGATC 4 cut(s) 197, 210, 765, 1048
BspQI GCTCTTC 1 cut(s) 798
BspT104I TTCGAA 1 cut(s) 981
BspTNI GGTCTC 1 cut(s) 1001
BsrBI CCGCTC 1 cut(s) 766
BsrDI GCAATG 3 cut(s) 736, 919, 1054
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 4 cut(s) 290, 370, 759, 1083
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 5 cut(s) 164, 165, 351, 378, 856
BssMI GATC 6 cut(s) 95, 202, 304, 757, 916, 1040
BssSI CACGAG 1 cut(s) 407
BssT1I CCWWGG 1 cut(s) 378
Bst2BI CACGAG 1 cut(s) 407
Bst2UI CCWGG 5 cut(s) 166, 353, 450, 747, 858
Bst4CI ACNGT 3 cut(s) 416, 518, 962
Bst6I CTCTTC 1 cut(s) 798
BstAPI GCANNNNNTGC 1 cut(s) 726
BstBI TTCGAA 1 cut(s) 981
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 5 cut(s) 92, 798, 936, 944, 996
BstF5I GGATG 3 cut(s) 73, 445, 687
BstKTI GATC 6 cut(s) 98, 205, 307, 760, 919, 1043
BstMAI GTCTC 3 cut(s) 30, 1001, 1027
BstMBI GATC 6 cut(s) 95, 202, 304, 757, 916, 1040
BstMWI GCNNNNNNNGC 3 cut(s) 275, 430, 726
BstNI CCWGG 5 cut(s) 166, 353, 450, 747, 858
BstPAI GACNNNNGTC 1 cut(s) 353
BstSCI CCNGG 5 cut(s) 164, 351, 448, 745, 856
BstSLI GKGCMC 1 cut(s) 716
BstV1I GCAGC 2 cut(s) 436, 713
BstV2I GAAGAC 2 cut(s) 349, 579
BstX2I RGATCY 2 cut(s) 202, 757
BstYI RGATCY 2 cut(s) 202, 757
Bsu36I CCTNAGG 1 cut(s) 798
BsuI GTATCC 1 cut(s) 550
BsuRI GGCC 3 cut(s) 61, 293, 453
BtsCI GGATG 3 cut(s) 73, 445, 687
BtsI GCAGTG 1 cut(s) 593
BtsIMutI CAGTG 2 cut(s) 192, 593
Cac8I GCNNGC 1 cut(s) 372
CciI TCATGA 1 cut(s) 1115
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 743
CseI GACGC 1 cut(s) 1067
CsiI ACCWGGT 1 cut(s) 745
Csp6I GTAC 5 cut(s) 241, 283, 412, 657, 1076
CspAI ACCGGT 1 cut(s) 296
CviAII CATG 3 cut(s) 615, 1044, 1116
CviQI GTAC 5 cut(s) 241, 283, 412, 657, 1076
DdeI CTNAG 5 cut(s) 92, 798, 936, 944, 996
DpnI GATC 6 cut(s) 97, 204, 306, 759, 918, 1042
DpnII GATC 6 cut(s) 95, 202, 304, 757, 916, 1040
DraI TTTAAA 1 cut(s) 484
DriI GACNNNNNGTC 1 cut(s) 580
EaeI YGGCCR 1 cut(s) 451
Eam1104I CTCTTC 1 cut(s) 798
Eam1105I GACNNNNNGTC 1 cut(s) 580
EarI CTCTTC 1 cut(s) 798
Eco130I CCWWGG 1 cut(s) 378
Eco24I GRGCYC 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 1001
Eco47I GGWCC 1 cut(s) 743
Eco81I CCTNAGG 1 cut(s) 798
Eco88I CYCGRG 1 cut(s) 767
EcoRII CCWGG 5 cut(s) 164, 351, 448, 745, 856
EcoT14I CCWWGG 1 cut(s) 378
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 3 cut(s) 618, 1047, 1119
FalI AAGNNNNNCTT 4 cut(s) 582, 614, 795, 827
FatI CATG 3 cut(s) 614, 1043, 1115
FauNDI CATATG 1 cut(s) 834
FbaI TGATCA 1 cut(s) 916
Fnu4HI GCNGC 3 cut(s) 425, 727, 764
FokI GGATG 3 cut(s) 80, 432, 694
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 3 cut(s) 425, 727, 764
FspBI CTAG 3 cut(s) 549, 645, 717
GluI GCNGC 3 cut(s) 425, 727, 764
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 3 cut(s) 61, 293, 453
HapII CCGG 2 cut(s) 206, 297
HgaI GACGC 1 cut(s) 1067
Hin1II CATG 3 cut(s) 618, 1047, 1119
HincII GTYRAC 1 cut(s) 752
HindII GTYRAC 1 cut(s) 752
HindIII AAGCTT 2 cut(s) 635, 1090
HinfI GANTC 4 cut(s) 48, 54, 312, 457
HpaII CCGG 2 cut(s) 206, 297
HphI GGTGA 3 cut(s) 16, 600, 1093
Hpy166II GTNNAC 2 cut(s) 227, 752
Hpy188I TCNGA 6 cut(s) 53, 93, 691, 937, 967, 999
Hpy188III TCNNGA 7 cut(s) 206, 321, 569, 920, 943, 1097, 1116
Hpy8I GTNNAC 2 cut(s) 227, 752
HpyAV CCTTC 2 cut(s) 283, 988
HpyCH4III ACNGT 3 cut(s) 416, 518, 962
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 430, 726
HpyF3I CTNAG 5 cut(s) 92, 798, 936, 944, 996
Hsp92II CATG 3 cut(s) 618, 1047, 1119
Kpn2I TCCGGA 1 cut(s) 205
Ksp22I TGATCA 1 cut(s) 916
Kzo9I GATC 6 cut(s) 95, 202, 304, 757, 916, 1040
LguI GCTCTTC 1 cut(s) 798
LmnI GCTCC 7 cut(s) 73, 160, 323, 379, 430, 844, 980
Lsp1109I GCAGC 2 cut(s) 436, 713
LweI GCATC 3 cut(s) 695, 913, 1042
MabI ACCWGGT 1 cut(s) 745
MaeI CTAG 3 cut(s) 549, 645, 717
MaeIII GTNAC 1 cut(s) 851
MalI GATC 6 cut(s) 97, 204, 306, 759, 918, 1042
MbiI CCGCTC 1 cut(s) 766
MboI GATC 6 cut(s) 95, 202, 304, 757, 916, 1040
MboII GAAGA 6 cut(s) 208, 211, 349, 584, 815, 995
MfeI CAATTG 1 cut(s) 141
MflI RGATCY 2 cut(s) 202, 757
MhlI GDGCHC 4 cut(s) 165, 376, 716, 950
MlsI TGGCCA 1 cut(s) 453
MluCI AATT 7 cut(s) 141, 394, 507, 670, 702, 930, 1102
MluNI TGGCCA 1 cut(s) 453
MlyI GAGTC 1 cut(s) 466
MmeI TCCRAC 1 cut(s) 316
Mox20I TGGCCA 1 cut(s) 453
MroI TCCGGA 1 cut(s) 205
MroXI GAANNNNTTC 1 cut(s) 636
MscI TGGCCA 1 cut(s) 453
MseI TTAA 4 cut(s) 483, 779, 872, 1029
MslI CAYNNNNRTG 1 cut(s) 613
Msp20I TGGCCA 1 cut(s) 453
MspA1I CMGCKG 2 cut(s) 536, 726
MspI CCGG 2 cut(s) 206, 297
MspR9I CCNGG 5 cut(s) 166, 353, 450, 747, 858
MunI CAATTG 1 cut(s) 141
Mva1269I GAATGC 1 cut(s) 977
MvaI CCWGG 5 cut(s) 166, 353, 450, 747, 858
MwoI GCNNNNNNNGC 3 cut(s) 275, 430, 726
NdeI CATATG 1 cut(s) 834
NdeII GATC 6 cut(s) 95, 202, 304, 757, 916, 1040
NlaIII CATG 3 cut(s) 618, 1047, 1119
NlaIV GGNNCC 2 cut(s) 162, 204
NspV TTCGAA 1 cut(s) 981
PaeR7I CTCGAG 1 cut(s) 767
PagI TCATGA 1 cut(s) 1115
PasI CCCWGGG 1 cut(s) 165
PciSI GCTCTTC 1 cut(s) 798
PctI GAATGC 1 cut(s) 977
PdmI GAANNNNTTC 1 cut(s) 636
PfeI GAWTC 3 cut(s) 48, 54, 312
PflFI GACNNNGTC 1 cut(s) 747
PinAI ACCGGT 1 cut(s) 296
PkrI GCNGC 3 cut(s) 426, 728, 765
PleI GAGTC 1 cut(s) 465
PpsI GAGTC 1 cut(s) 465
PshAI GACNNNNGTC 1 cut(s) 353
Psp6I CCWGG 5 cut(s) 164, 351, 448, 745, 856
PspGI CCWGG 5 cut(s) 164, 351, 448, 745, 856
PspN4I GGNNCC 2 cut(s) 162, 204
PspPI GGNCC 1 cut(s) 743
PspXI VCTCGAGB 1 cut(s) 767
PsuI RGATCY 2 cut(s) 202, 757
PsyI GACNNNGTC 1 cut(s) 747
PvuII CAGCTG 2 cut(s) 536, 726
RsaI GTAC 5 cut(s) 242, 284, 413, 658, 1077
RsaNI GTAC 5 cut(s) 241, 283, 412, 657, 1076
RseI CAYNNNNRTG 1 cut(s) 613
SapI GCTCTTC 1 cut(s) 798
SaqAI TTAA 4 cut(s) 483, 779, 872, 1029
SatI GCNGC 3 cut(s) 425, 727, 764
Sau3AI GATC 6 cut(s) 95, 202, 304, 757, 916, 1040
Sau96I GGNCC 1 cut(s) 743
ScaI AGTACT 1 cut(s) 1077
SchI GAGTC 1 cut(s) 466
ScrFI CCNGG 5 cut(s) 166, 353, 450, 747, 858
SduI GDGCHC 4 cut(s) 165, 376, 716, 950
SetI ASST 9 cut(s) 78, 260, 435, 538, 631, 639, 728, 751, 1094
SexAI ACCWGGT 1 cut(s) 745
SfaNI GCATC 3 cut(s) 695, 913, 1042
Sfr274I CTCGAG 1 cut(s) 767
SfuI TTCGAA 1 cut(s) 981
SinI GGWCC 1 cut(s) 743
SlaI CTCGAG 1 cut(s) 767
SmiMI CAYNNNNRTG 1 cut(s) 613
SmlI CTYRAG 2 cut(s) 588, 767
SmoI CTYRAG 2 cut(s) 588, 767
Sse9I AATT 7 cut(s) 141, 394, 507, 670, 702, 930, 1102
SsiI CCGC 1 cut(s) 764
SspI AATATT 2 cut(s) 776, 954
SspMI CTAG 3 cut(s) 549, 645, 717
StyD4I CCNGG 5 cut(s) 164, 351, 448, 745, 856
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 3 cut(s) 416, 518, 962
TaqI TCGA 4 cut(s) 98, 504, 768, 981
TasI AATT 7 cut(s) 141, 394, 507, 670, 702, 930, 1102
TatI WGTACW 2 cut(s) 656, 1075
TauI GCSGC 1 cut(s) 766
TfiI GAWTC 3 cut(s) 48, 54, 312
Tru1I TTAA 4 cut(s) 483, 779, 872, 1029
Tru9I TTAA 4 cut(s) 483, 779, 872, 1029
TscAI CASTG 2 cut(s) 192, 600
TseI GCWGC 2 cut(s) 424, 726
TspDTI ATGAA 4 cut(s) 356, 537, 1086, 1104
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 2 cut(s) 192, 600
Tth111I GACNNNGTC 1 cut(s) 747
VpaK11BI GGWCC 1 cut(s) 743
XapI RAATTY 2 cut(s) 507, 930
XhoI CTCGAG 1 cut(s) 767
XmnI GAANNNNTTC 1 cut(s) 636
XspI CTAG 3 cut(s) 549, 645, 717
ZrmI AGTACT 1 cut(s) 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.