Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0021908

Physical Location & Seq

Genomic Coordinates Forward (+)

8584535 .. 8585297

Gene Structure 763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAGGCAATTTCCAAGCATAAGAGGAAACATAAATGAGAAGATGATGACAACAATGGTGGAGTCTCAGACACGGTCTCCGTGGCGTACACCGGTTCCTTACCTATTCGGTGGTTTAGCCGCCATGCTTGGACTCATAGCCTTTGCTCTCTTGTTGCTCGCCTGCTCCTACTGGAGGCTCTCGCGGCAGACAGAAGATGAAGAGAAACAGACGGAGTCCGGTGAGAAAGTGGTGGCTAAGGCTTTTGAGGAGAAGATTCTTGTGATCATGGCTGGACAAAACAACCCTACCTTCTTAGCCACTCCGGTCGCGGCCAAGATTTGCCTGGATTGTGTTAATATGGAGAAGAAAGAAGGACAAAATGGGGAATCTAAAGTAACAGAAGAAAACCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006521 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0006868 GO:0008150 GO:0009987 GO:0010565 GO:0010585 GO:0015711 GO:0015804 GO:0015849 GO:0016020 GO:0016021 GO:0019222 GO:0031224 GO:0031323 GO:0032879 GO:0032890 GO:0032940 GO:0033238 GO:0034762 GO:0034765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044070 GO:0044424 GO:0044425 GO:0044464 GO:0046717 GO:0046903 GO:0046942 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051179 GO:0051234 GO:0051952 GO:0051955 GO:0062012 GO:0065007 GO:0071702 GO:0071705 GO:0080090 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.68

Weight (kDa)

5.89

Isoelectric Point (pI)

54.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0021908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24920
malus_domestica	MD08G1049400.v1.1
prunus_persica	Prupe.1G399200_v2.0.a1
pyrus_communis	pycom08g04130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	184, 311
AciI	CCGC	3 cut(s)	120, 184, 311
AcoI	YGGCCR	1 cut(s)	312
AfaI	GTAC	1 cut(s)	88
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgeI	ACCGGT	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	324
Alw26I	GTCTC	2 cut(s)	69, 81
AoxI	GGCC	1 cut(s)	312
AsiGI	ACCGGT	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	326
BclI	TGATCA	1 cut(s)	264
BcoDI	GTCTC	2 cut(s)	69, 81
BisI	GCNGC	3 cut(s)	120, 185, 312
BlsI	GCNGC	3 cut(s)	121, 186, 313
Bme1390I	CCNGG	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	326
BpmI	CTGGAG	1 cut(s)	193
Bpu10I	CCTNAGC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	80
BsaWI	WCCGGW	3 cut(s)	91, 218, 304
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	263
Bsh1236I	CGCG	2 cut(s)	184, 311
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	314
BshTI	ACCGGT	1 cut(s)	91
BsiEI	CGRYCG	1 cut(s)	309
BsiSI	CCGG	3 cut(s)	92, 219, 305
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmAI	GTCTC	2 cut(s)	69, 81
BsnI	GGCC	1 cut(s)	314
Bso31I	GGTCTC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	264
BspACI	CCGC	3 cut(s)	120, 184, 311
BspANI	GGCC	1 cut(s)	314
BspCNI	CTCAG	1 cut(s)	79
BspFNI	CGCG	2 cut(s)	184, 311
BspLI	GGNNCC	1 cut(s)	96
BspTNI	GGTCTC	1 cut(s)	81
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	75
Bst6I	CTCTTC	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	159, 163
BstDEI	CTNAG	3 cut(s)	66, 237, 295
BstDSI	CCRYGG	1 cut(s)	80
BstENI	CCTNNNNNAGG	1 cut(s)	172
BstFNI	CGCG	2 cut(s)	184, 311
BstKTI	GATC	1 cut(s)	267
BstMAI	GTCTC	2 cut(s)	69, 81
BstMBI	GATC	1 cut(s)	264
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	324
BstUI	CGCG	2 cut(s)	184, 311
BsuRI	GGCC	1 cut(s)	314
BtgI	CCRYGG	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	2 cut(s)	159, 163
Cfr10I	RCCGGY	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	87
CspAI	ACCGGT	1 cut(s)	91
CspCI	CAANNNNNGTGG	2 cut(s)	39, 74
CviAII	CATG	2 cut(s)	124, 268
CviJI	RGCY	8 cut(s)	119, 140, 178, 236, 242, 272, 299, 314
CviKI_1	RGCY	8 cut(s)	119, 140, 178, 236, 242, 272, 299, 314
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	3 cut(s)	66, 237, 295
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
EaeI	YGGCCR	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	81
EcoNI	CCTNNNNNAGG	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	324
FaeI	CATG	2 cut(s)	127, 271
FaiI	YATR	6 cut(s)	20, 32, 125, 137, 269, 341
FatI	CATG	2 cut(s)	123, 267
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	3 cut(s)	120, 185, 312
Fsp4HI	GCNGC	3 cut(s)	120, 185, 312
GluI	GCNGC	3 cut(s)	120, 185, 312
GsuI	CTGGAG	1 cut(s)	193
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	3 cut(s)	92, 219, 305
Hin1II	CATG	2 cut(s)	127, 271
HinfI	GANTC	5 cut(s)	62, 132, 215, 256, 368
HpaII	CCGG	3 cut(s)	92, 219, 305
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	1 cut(s)	69
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	301, 347
HpyCH4III	ACNGT	1 cut(s)	75
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	3 cut(s)	66, 237, 295
Hsp92II	CATG	2 cut(s)	127, 271
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	1 cut(s)	264
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	8 cut(s)	105, 157, 175, 232, 258, 311, 318, 338
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	1 cut(s)	266
MboI	GATC	1 cut(s)	264
MboII	GAAGA	6 cut(s)	52, 206, 212, 265, 358, 395
MluCI	AATT	1 cut(s)	8
MlyI	GAGTC	3 cut(s)	71, 126, 224
MnlI	CCTC	3 cut(s)	17, 168, 241
MseI	TTAA	1 cut(s)	336
MspI	CCGG	3 cut(s)	92, 219, 305
MspR9I	CCNGG	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	326
MvnI	CGCG	2 cut(s)	184, 311
MwoI	GCNNNNNNNGC	1 cut(s)	184
NdeII	GATC	1 cut(s)	264
NlaIII	CATG	2 cut(s)	127, 271
NlaIV	GGNNCC	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	256, 368
PflFI	GACNNNGTC	2 cut(s)	73, 214
PinAI	ACCGGT	1 cut(s)	91
PkrI	GCNGC	3 cut(s)	121, 186, 313
PleI	GAGTC	3 cut(s)	70, 126, 223
PpsI	GAGTC	3 cut(s)	70, 126, 223
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	96
PsyI	GACNNNGTC	2 cut(s)	73, 214
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	3 cut(s)	120, 185, 312
Sau3AI	GATC	1 cut(s)	264
SchI	GAGTC	3 cut(s)	71, 126, 224
ScrFI	CCNGG	1 cut(s)	326
SetI	ASST	2 cut(s)	105, 293
Sse9I	AATT	1 cut(s)	8
SsiI	CCGC	3 cut(s)	120, 184, 311
StyD4I	CCNGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	75
TasI	AATT	1 cut(s)	8
TauI	GCSGC	3 cut(s)	122, 187, 314
TfiI	GAWTC	2 cut(s)	256, 368
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TspDTI	ATGAA	1 cut(s)	213
TspGWI	ACGGA	2 cut(s)	69, 227
Tth111I	GACNNNGTC	2 cut(s)	73, 214
XagI	CCTNNNNNAGG	1 cut(s)	172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.