Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0021908

Physical Location & Seq

Genomic Coordinates Reverse (-)

35295377 .. 35295973

Gene Structure 597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G399200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAGAACCTTAACTGCCATCTCTGCAACAACAGCAACAAAATCTTCATTGGAATCATTGCCGCCAACACCAGCCATGGCTGTTCAGCAGCAGCGCTCGCCATGGCACTCTCCGGTGCCATACCTCTTCGGAGGCCTGGCAGCGATGCTGGGTCTTATTGCGTTTGCTCTGTTGATCCTGGCCTGCTCTTACTGGAAGCTTTCGAGCCGATTGGAAGACAGAGAAGGAGGCGAAAGGGACTTGGAGAGTGGCGGTGGTGATGAGAAAGATCAAGGCGATGAGTCTAGCAAGACAGTGAAGGTTTCTGAAGAGAAGATTTTGGTGATAATGGCTGGAAATGAGAACGCAACTTTTTTGGCGACGCCTGTTTCATTGTGCTCTAAAGTTGCTTCCTTTGGTGCTGATAAGCACGTTGTTGATGAACAGGGAGAGAGTAAAGATGGAGATAAAGAAGAGAGTTCTTCTGAGAAAATGAAAGAGGAATTGGGAGCCCAGCATCTTGATGAAGCTGTGAGTAGTATTCAAAACAGCAATACAGAAACCCAACAGGGGCAATTAGAAGAAGAAGAAGAAGCCCACCACCATCAAAACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006521 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0006868 GO:0008150 GO:0009987 GO:0010565 GO:0010585 GO:0015711 GO:0015804 GO:0015849 GO:0016020 GO:0016021 GO:0019222 GO:0031224 GO:0031323 GO:0032879 GO:0032890 GO:0032940 GO:0033238 GO:0034762 GO:0034765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044070 GO:0044424 GO:0044425 GO:0044464 GO:0046717 GO:0046903 GO:0046942 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051179 GO:0051234 GO:0051952 GO:0051955 GO:0062012 GO:0065007 GO:0071702 GO:0071705 GO:0080090 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

21.42

Weight (kDa)

4.66

Isoelectric Point (pI)

55.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24920
malus_domestica	MD08G1049400.v1.1
prunus_persica	Prupe.1G399200_v2.0.a1
pyrus_communis	pycom08g04130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	115
AciI	CCGC	2 cut(s)	62, 252
AclWI	GGATC	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	362
AfeI	AGCGCT	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	549
AgsI	TTSAA	1 cut(s)	524
AjnI	CCWGG	2 cut(s)	135, 177
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
AluBI	AGCT	2 cut(s)	199, 509
AluI	AGCT	2 cut(s)	199, 509
Alw21I	GWGCWC	1 cut(s)	380
AlwI	GGATC	1 cut(s)	169
Aor51HI	AGCGCT	1 cut(s)	95
AoxI	GGCC	2 cut(s)	133, 180
ApeKI	GCWGC	3 cut(s)	88, 91, 140
AspLEI	GCGC	1 cut(s)	96
AsuHPI	GGTGA	2 cut(s)	269, 334
BanI	GGYRCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	493
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	380
BbvI	GCAGC	3 cut(s)	100, 103, 152
BccI	CCATC	3 cut(s)	26, 434, 591
BciT130I	CCWGG	2 cut(s)	137, 179
BfaI	CTAG	1 cut(s)	285
BfoI	RGCGCY	1 cut(s)	97
BisI	GCNGC	4 cut(s)	62, 89, 92, 141
BlsI	GCNGC	4 cut(s)	63, 90, 93, 142
Bme1390I	CCNGG	2 cut(s)	137, 179
BmiI	GGNNCC	2 cut(s)	117, 490
BmrFI	CCNGG	2 cut(s)	137, 179
BmsI	GCATC	2 cut(s)	135, 505
BpiI	GAAGAC	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	75, 101
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse1I	ACTGG	2 cut(s)	197, 592
Bse3DI	GCAATG	1 cut(s)	56
BseBI	CCWGG	2 cut(s)	137, 179
BseDI	CCNNGG	2 cut(s)	75, 101
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMI	GCAATG	1 cut(s)	56
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	2 cut(s)	197, 592
BseXI	GCAGC	3 cut(s)	100, 103, 152
BseYI	CCCAGC	2 cut(s)	148, 492
BshFI	GGCC	2 cut(s)	135, 182
BshNI	GGYRCC	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	2 cut(s)	135, 182
Bsp1286I	GDGCHC	2 cut(s)	380, 493
Bsp143I	GATC	2 cut(s)	174, 268
Bsp19I	CCATGG	2 cut(s)	75, 101
BspACI	CCGC	2 cut(s)	62, 252
BspANI	GGCC	2 cut(s)	135, 182
BspCNI	CTCAG	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	117, 490
BspPI	GGATC	1 cut(s)	169
BspT107I	GGYRCC	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	197, 592
BssECI	CCNNGG	2 cut(s)	75, 101
BssMI	GATC	2 cut(s)	174, 268
BssNI	GRCGYC	1 cut(s)	362
BssT1I	CCWWGG	2 cut(s)	75, 101
Bst2UI	CCWGG	2 cut(s)	137, 179
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	3 cut(s)	131, 303, 447
BstACI	GRCGYC	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	98, 184
BstDEI	CTNAG	1 cut(s)	465
BstDSI	CCRYGG	2 cut(s)	75, 101
BstH2I	RGCGCY	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	2 cut(s)	177, 271
BstMBI	GATC	2 cut(s)	174, 268
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 32, 97
BstNI	CCWGG	2 cut(s)	137, 179
BstSCI	CCNGG	2 cut(s)	135, 177
BstV1I	GCAGC	3 cut(s)	100, 103, 152
BstV2I	GAAGAC	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	135, 182
BtgI	CCRYGG	2 cut(s)	75, 101
BtgZI	GCGATG	2 cut(s)	158, 291
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	2 cut(s)	98, 184
CfoI	GCGC	1 cut(s)	96
CseI	GACGC	1 cut(s)	370
CviAII	CATG	2 cut(s)	76, 102
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	2 cut(s)	176, 270
DpnII	GATC	2 cut(s)	174, 268
Eam1104I	CTCTTC	3 cut(s)	131, 303, 447
EarI	CTCTTC	3 cut(s)	131, 303, 447
Eco130I	CCWWGG	2 cut(s)	75, 101
Eco147I	AGGCCT	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	493
Eco47III	AGCGCT	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	327
EcoRII	CCWGG	2 cut(s)	135, 177
EcoT14I	CCWWGG	2 cut(s)	75, 101
EcoT38I	GRGCYC	1 cut(s)	493
ErhI	CCWWGG	2 cut(s)	75, 101
FaeI	CATG	2 cut(s)	79, 105
FaiI	YATR	3 cut(s)	77, 103, 121
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	2 cut(s)	75, 101
Fnu4HI	GCNGC	4 cut(s)	62, 89, 92, 141
FriOI	GRGCYC	1 cut(s)	493
Fsp4HI	GCNGC	4 cut(s)	62, 89, 92, 141
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	4 cut(s)	62, 89, 92, 141
GsaI	CCCAGC	2 cut(s)	152, 496
HaeII	RGCGCY	1 cut(s)	97
HaeIII	GGCC	2 cut(s)	135, 182
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	370
HhaI	GCGC	1 cut(s)	96
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	2 cut(s)	79, 105
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	2 cut(s)	53, 281
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	2 cut(s)	269, 334
Hpy188I	TCNGA	3 cut(s)	131, 307, 466
Hpy188III	TCNNGA	1 cut(s)	500
Hpy99I	CGWCG	1 cut(s)	364
HpyAV	CCTTC	2 cut(s)	218, 292
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 32, 97
HpyF3I	CTNAG	1 cut(s)	465
HpySE526I	ACGT	1 cut(s)	411
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	2 cut(s)	79, 105
HspAI	GCGC	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	174, 268
LmnI	GCTCC	1 cut(s)	488
Lsp1109I	GCAGC	3 cut(s)	100, 103, 152
LweI	GCATC	2 cut(s)	135, 505
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	1 cut(s)	411
MalI	GATC	2 cut(s)	176, 270
MboI	GATC	2 cut(s)	174, 268
MhlI	GDGCHC	2 cut(s)	380, 493
MluCI	AATT	2 cut(s)	482, 554
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	4 cut(s)	125, 134, 221, 472
MseI	TTAA	1 cut(s)	11
MslI	CAYNNNNRTG	1 cut(s)	501
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	137, 179
MvaI	CCWGG	2 cut(s)	137, 179
MwoI	GCNNNNNNNGC	3 cut(s)	23, 32, 97
NcoI	CCATGG	2 cut(s)	75, 101
NdeII	GATC	2 cut(s)	174, 268
NlaIII	CATG	2 cut(s)	79, 105
NlaIV	GGNNCC	2 cut(s)	117, 490
PceI	AGGCCT	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	4 cut(s)	63, 90, 93, 142
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
Psp6I	CCWGG	2 cut(s)	135, 177
PspFI	CCCAGC	2 cut(s)	148, 492
PspGI	CCWGG	2 cut(s)	135, 177
PspN4I	GGNNCC	2 cut(s)	117, 490
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	4 cut(s)	62, 89, 92, 141
Sau3AI	GATC	2 cut(s)	174, 268
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	2 cut(s)	137, 179
SduI	GDGCHC	2 cut(s)	380, 493
SetI	ASST	6 cut(s)	11, 126, 201, 303, 414, 511
SfaNI	GCATC	2 cut(s)	135, 505
SmiMI	CAYNNNNRTG	1 cut(s)	501
Sse9I	AATT	2 cut(s)	482, 554
SseBI	AGGCCT	1 cut(s)	135
SsiI	CCGC	2 cut(s)	62, 252
SspMI	CTAG	1 cut(s)	285
StuI	AGGCCT	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	135, 177
StyI	CCWWGG	2 cut(s)	75, 101
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	1 cut(s)	203
TasI	AATT	2 cut(s)	482, 554
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	300
TseI	GCWGC	3 cut(s)	88, 91, 140
TspDTI	ATGAA	5 cut(s)	36, 360, 435, 488, 519
TspRI	CASTG	1 cut(s)	300
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.