Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0021908

Physical Location & Seq

Genomic Coordinates Forward (+)

3855555 .. 3856142

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1049400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAGAACTGTAATTGCCTTCTCTACTGCAATTCCGGCAACGAAATCCCCACTGGAATCATCACTGCCGCCAACTCCTACAACCATGGGGCAGCAGCAGCGCTCGCCGTGGCATTCTCCGGTGCCCTACCTCTTCGGAGGCCTGGCGGCGATGTTGTGTCTGATTGCTTTTGCTCTGTTGATCCTGGCATGCTCTTACTGGAAGCTTTCGAGTCGGCTGGAGGACAGAGAAGGCGGCGAGGGTGACTTGGAGAGCGGCGACGACGAGAAAGGCGACAGGTCGAATAAACCAGTGAAGGTGTTCGAGGAGAAGATTTTGGTTATCATGGCGGGGAATGAGAACCCCACTTTCTTAGCCACGCCGGTTTCGGTTTGCTCGAAAGCTGCTTCTTTCGGCGGCGGCGATGAGAAAGTGGTGGACGGTCAGGGCATGAGTAAAGACGGAGAGAACGAGGAGATTTCTGAAAAAGTGAAAGAAGAAATGGGGTCCCATGATCACGAAGAACCCGAAAATATTCGAAACCAAGACGATGAATCGGAGACTCAGCCGAGGAGATTACAAGAAGAAGTCCAACATGAAAACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006521 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0006868 GO:0008150 GO:0009987 GO:0010565 GO:0010585 GO:0015711 GO:0015804 GO:0015849 GO:0016020 GO:0016021 GO:0019222 GO:0031224 GO:0031323 GO:0032879 GO:0032890 GO:0032940 GO:0033238 GO:0034762 GO:0034765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044070 GO:0044424 GO:0044425 GO:0044464 GO:0046717 GO:0046903 GO:0046942 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051179 GO:0051234 GO:0051952 GO:0051955 GO:0062012 GO:0065007 GO:0071702 GO:0071705 GO:0080090 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

196

Amino Acids

21.42

Weight (kDa)

4.62

Isoelectric Point (pI)

65.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24920
malus_domestica	MD08G1049400.v1.1
prunus_persica	Prupe.1G399200_v2.0.a1
pyrus_communis	pycom08g04130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	121
AccBSI	CCGCTC	1 cut(s)	255
AciI	CCGC	7 cut(s)	68, 146, 234, 255, 329, 396, 399
AclWI	GGATC	1 cut(s)	175
AfeI	AGCGCT	1 cut(s)	101
AjnI	CCWGG	2 cut(s)	141, 183
AluBI	AGCT	2 cut(s)	205, 383
AluI	AGCT	2 cut(s)	205, 383
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	1 cut(s)	175
Aor51HI	AGCGCT	1 cut(s)	101
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	4 cut(s)	91, 94, 97, 383
Asp700I	GAANNNNTTC	2 cut(s)	299, 513
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	486
AsuHPI	GGTGA	1 cut(s)	254
AsuII	TTCGAA	1 cut(s)	517
AvaII	GGWCC	1 cut(s)	486
BaeGI	GKGCMC	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	121
BbvI	GCAGC	4 cut(s)	103, 106, 109, 370
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	2 cut(s)	143, 185
BclI	TGATCA	1 cut(s)	493
BcoDI	GTCTC	1 cut(s)	533
BfoI	RGCGCY	1 cut(s)	103
Bme1390I	CCNGG	2 cut(s)	143, 185
Bme18I	GGWCC	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	486
BmiI	GGNNCC	3 cut(s)	123, 487, 488
BmrFI	CCNGG	2 cut(s)	143, 185
BpmI	CTGGAG	1 cut(s)	239
Bpu14I	TTCGAA	1 cut(s)	517
BsaJI	CCNNGG	3 cut(s)	84, 107, 548
BsaWI	WCCGGW	1 cut(s)	118
Bse118I	RCCGGY	1 cut(s)	361
Bse1I	ACTGG	4 cut(s)	57, 203, 290, 583
BseBI	CCWGG	2 cut(s)	143, 185
BseDI	CCNNGG	3 cut(s)	84, 107, 548
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	4 cut(s)	57, 203, 290, 583
BseRI	GAGGAG	3 cut(s)	320, 467, 565
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	4 cut(s)	103, 106, 109, 370
BshFI	GGCC	1 cut(s)	141
BshNI	GGYRCC	1 cut(s)	121
BsiSI	CCGG	3 cut(s)	35, 119, 362
BslFI	GGGAC	1 cut(s)	472
BsmAI	GTCTC	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	472
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	141
Bsp119I	TTCGAA	1 cut(s)	517
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	180, 493
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	7 cut(s)	68, 146, 234, 255, 329, 396, 399
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	556
BspLI	GGNNCC	3 cut(s)	123, 487, 488
BspPI	GGATC	1 cut(s)	175
BspT104I	TTCGAA	1 cut(s)	517
BspT107I	GGYRCC	1 cut(s)	121
BsrBI	CCGCTC	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	361
BsrI	ACTGG	4 cut(s)	57, 203, 290, 583
BssAI	RCCGGY	1 cut(s)	361
BssECI	CCNNGG	3 cut(s)	84, 107, 548
BssMI	GATC	2 cut(s)	180, 493
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	2 cut(s)	143, 185
Bst4CI	ACNGT	2 cut(s)	10, 422
Bst6I	CTCTTC	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	517
BstC8I	GCNNGC	2 cut(s)	104, 190
BstDEI	CTNAG	2 cut(s)	352, 543
BstDSI	CCRYGG	2 cut(s)	84, 107
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	2 cut(s)	183, 496
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	2 cut(s)	180, 493
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 97, 103
BstNI	CCWGG	2 cut(s)	143, 185
BstNSI	RCATGY	1 cut(s)	192
BstSCI	CCNGG	2 cut(s)	141, 183
BstSLI	GKGCMC	1 cut(s)	126
BstV1I	GCAGC	4 cut(s)	103, 106, 109, 370
BsuRI	GGCC	1 cut(s)	141
BtgI	CCRYGG	2 cut(s)	84, 107
BtgZI	GCGATG	2 cut(s)	164, 417
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	3 cut(s)	50, 62, 297
Cac8I	GCNNGC	2 cut(s)	104, 190
CfoI	GCGC	1 cut(s)	102
Cfr10I	RCCGGY	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	486
CviAII	CATG	6 cut(s)	85, 189, 325, 430, 491, 575
CviJI	RGCY	6 cut(s)	141, 205, 217, 356, 383, 547
CviKI_1	RGCY	6 cut(s)	141, 205, 217, 356, 383, 547
DdeI	CTNAG	2 cut(s)	352, 543
DpnI	GATC	2 cut(s)	182, 495
DpnII	GATC	2 cut(s)	180, 493
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	84
Eco147I	AGGCCT	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	486
Eco47III	AGCGCT	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	486
EcoRII	CCWGG	2 cut(s)	141, 183
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	6 cut(s)	88, 192, 328, 433, 494, 578
FaiI	YATR	6 cut(s)	86, 190, 326, 431, 492, 576
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	6 cut(s)	84, 188, 324, 429, 490, 574
FauI	CCCGC	1 cut(s)	322
FbaI	TGATCA	1 cut(s)	493
GlaI	GCGC	1 cut(s)	101
GsuI	CTGGAG	1 cut(s)	239
HaeII	RGCGCY	1 cut(s)	103
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	3 cut(s)	35, 119, 362
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	6 cut(s)	88, 192, 328, 433, 494, 578
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	4 cut(s)	56, 211, 533, 541
HpaII	CCGG	3 cut(s)	35, 119, 362
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	4 cut(s)	137, 162, 463, 538
Hpy188III	TCNNGA	1 cut(s)	497
Hpy8I	GTNNAC	1 cut(s)	418
Hpy99I	CGWCG	2 cut(s)	263, 266
HpyAV	CCTTC	3 cut(s)	28, 224, 289
HpyCH4III	ACNGT	2 cut(s)	10, 422
HpyCH4V	TGCA	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 97, 103
HpyF3I	CTNAG	2 cut(s)	352, 543
Hsp92II	CATG	6 cut(s)	88, 192, 328, 433, 494, 578
HspAI	GCGC	1 cut(s)	100
KflI	GGGWCCC	1 cut(s)	486
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	180, 493
Lsp1109I	GCAGC	4 cut(s)	103, 106, 109, 370
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	2 cut(s)	182, 495
MbiI	CCGCTC	1 cut(s)	255
MboI	GATC	2 cut(s)	180, 493
MboII	GAAGA	5 cut(s)	124, 322, 488, 512, 575
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	2 cut(s)	12, 30
MlyI	GAGTC	2 cut(s)	220, 535
MnlI	CCTC	7 cut(s)	131, 140, 214, 232, 298, 445, 543
MroXI	GAANNNNTTC	2 cut(s)	299, 513
MspI	CCGG	3 cut(s)	35, 119, 362
MspR9I	CCNGG	2 cut(s)	143, 185
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	2 cut(s)	143, 185
MwoI	GCNNNNNNNGC	3 cut(s)	35, 97, 103
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	2 cut(s)	180, 493
NlaIII	CATG	6 cut(s)	88, 192, 328, 433, 494, 578
NlaIV	GGNNCC	3 cut(s)	123, 487, 488
NmeAIII	GCCGAG	1 cut(s)	573
NmuCI	GTSAC	1 cut(s)	242
NspI	RCATGY	1 cut(s)	192
NspV	TTCGAA	1 cut(s)	517
PaeI	GCATGC	1 cut(s)	192
PceI	AGGCCT	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	5 cut(s)	270, 374, 399, 447, 504
PctI	GAATGC	1 cut(s)	112
PdmI	GAANNNNTTC	2 cut(s)	299, 513
PfeI	GAWTC	2 cut(s)	56, 533
PleI	GAGTC	2 cut(s)	219, 535
PpsI	GAGTC	2 cut(s)	219, 535
PpuMI	RGGWCCY	1 cut(s)	486
Psp5II	RGGWCCY	1 cut(s)	486
Psp6I	CCWGG	2 cut(s)	141, 183
PspGI	CCWGG	2 cut(s)	141, 183
PspN4I	GGNNCC	3 cut(s)	123, 487, 488
PspPI	GGNCC	1 cut(s)	486
PspPPI	RGGWCCY	1 cut(s)	486
Sau3AI	GATC	2 cut(s)	180, 493
Sau96I	GGNCC	1 cut(s)	486
SchI	GAGTC	2 cut(s)	220, 535
ScrFI	CCNGG	2 cut(s)	143, 185
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	5 cut(s)	132, 207, 281, 300, 385
SfuI	TTCGAA	1 cut(s)	517
SinI	GGWCC	1 cut(s)	486
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	2 cut(s)	12, 30
SseBI	AGGCCT	1 cut(s)	141
SsiI	CCGC	7 cut(s)	68, 146, 234, 255, 329, 396, 399
SspI	AATATT	1 cut(s)	514
StuI	AGGCCT	1 cut(s)	141
StyD4I	CCNGG	2 cut(s)	141, 183
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	10, 422
TaqI	TCGA	5 cut(s)	209, 281, 303, 377, 517
TasI	AATT	2 cut(s)	12, 30
TauI	GCSGC	6 cut(s)	70, 149, 237, 258, 399, 402
TfiI	GAWTC	2 cut(s)	56, 533
TscAI	CASTG	3 cut(s)	57, 69, 297
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	4 cut(s)	91, 94, 97, 383
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	546
TspGWI	ACGGA	1 cut(s)	456
TspRI	CASTG	3 cut(s)	57, 69, 297
VpaK11BI	GGWCC	1 cut(s)	486
XceI	RCATGY	1 cut(s)	192
XmnI	GAANNNNTTC	2 cut(s)	299, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.