Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012030

Physical Location & Seq

Genomic Coordinates Forward (+)

16779643 .. 16781424

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGACTACAAAACGCATAGACAGAGATCTCCCATCTTCCGACGATCCTTCCTCCGCTAAACGCCGTATCGAATTCCCCGAAGAAACACTCGAAAACGACGGTGCTGCCGCAATCAAACTCCTTAGCTTACTCCTCCAATGCGCCGAATACGTAGCTACTGATCATCTCCGTGAAGCTTCAACACTTTTATCCGAAATCTCCGAGATATGTTCTCCGTTCGGTTCCTCGCCGGAGCGAGTCGTCGCTTACTTCGCTCAAGCGCTACAAACGCGCGTGATCAGCTCTTACCTCTCCGGCGCGTGTTCTCCCCTCTCCGAGAAACCACTCACTGTTGTTCAGTCTCAGAAAATCTTCTCCGCCTTGCAGACTTATAACTCCGTTAGTCCTCTGATCAAATTCTCACATTTCACGGCGAATCAAGCCATTTTTCAGGCGCTTGACGGAGAAGATTCCGTTCATATCATCGATCTCGATGTTATGCAAGGTCTTCAATGGCCGGCTCTATTTCACATCCTCGCTTCACGTCCTCGAAAACTCCGATCAATTCGAATCACCGGATTTGGTTCCTCCTCCGATCTACTCGCTTCAACTGGCCGGAGACTCGCCGATTTCGCATCATCGTTAAACCTCCCTTTCGAATTTCATCCAATTGAAGGCATAATCGGAAACCTAATCGATCCGAGCCAACTCGCAACGAGACAAGGAGAAGCTGTGGTGGTTCATTGGATGCAGCACCGGTTATATGATGTTACAGGGAACAATCTCGAGACGTTGGAGATTCTACGGAGGCTGAAACCGAATCTGATCACGGTGGTGGAGCAAGAATTGAGCTACGACGATGGAGGAAGCTTTTTAGGAAGATTCGTGGAGGCTTTGCATTATTATAGCGCGTTGTTTGACGCGCTAGGAGATGGATTGGGTGAAGAGAGTGGTGAGAGATTCACGGTGGAGCAGATTGTTTTGGGGACGGAGATAAGAAACATTGTGGCGCACGGAGGAGGAAGAAGGAAGAGAATGAAGTGGAAAGAAGAACTGAGCCGGGTCGGGTTTAGACCTGTTTCGCTTCGGGGTAACCCGGCGACACAAGCGGGTTTATTGTTGGGTATGTTACCGTGGAATGGATATACTTTGGTTGAAGAGAATGGAACCCTCCGTCTTGGCTGGAAGGATCTCTCGCTTTTGACTGCCTCTGCCTGGAAATCTCAGCCGTTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045165 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090610 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

405

Amino Acids

44.89

Weight (kDa)

5.68

Isoelectric Point (pI)

58.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	41 - 400	5.2e-120	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41920
fragaria_vesca	FvH4_6g39610
malus_domestica	MD09G1137800.v1.1 MD17G1128300.v1.1
prunus_persica	Prupe.3G187000_v2.0.a1
pyrus_communis	pycom09g05890 pycom17g12050
rosa_chinensis	RchiOBHm_Chr2g0153661
rosa_laevigata	RLG00000020719
rosa_multiflora	Rmu_co8486391.1_g000001 Rmu_sc0000758.1_g000007 Rmu_sc0005823.1_g000002
rosa_roxburghii	Rroxscaffold_2G00094820
rosa_rugosa	Rorug02G0441200
rosa_samantha	Rh2AG504300 Rh2BG515000 Rh2CG490200 Rh2DG527100
rosa_wichuraiana	Rw2G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AccII	CGCG	5 cut(s)	271, 273, 299, 890, 902
AciI	CCGC	4 cut(s)	54, 108, 357, 1088
AclWI	GGATC	3 cut(s)	38, 671, 1176
AcoI	YGGCCR	2 cut(s)	494, 592
AcsI	RAATTY	3 cut(s)	71, 395, 638
AfeI	AGCGCT	1 cut(s)	261
AfiI	CCNNNNNNNGG	3 cut(s)	653, 1118, 1194
AgeI	ACCGGT	1 cut(s)	735
AgsI	TTSAA	5 cut(s)	180, 491, 588, 653, 1136
AjiI	CACGTC	1 cut(s)	524
AjnI	CCWGG	1 cut(s)	1193
AleI	CACNNNNGTG	1 cut(s)	812
AluBI	AGCT	7 cut(s)	126, 155, 176, 282, 710, 831, 849
AluI	AGCT	7 cut(s)	126, 155, 176, 282, 710, 831, 849
Alw26I	GTCTC	4 cut(s)	345, 592, 691, 761
AlwI	GGATC	3 cut(s)	38, 671, 1176
Ama87I	CYCGRG	1 cut(s)	764
Aor51HI	AGCGCT	1 cut(s)	261
AoxI	GGCC	2 cut(s)	494, 592
ApeKI	GCWGC	2 cut(s)	104, 730
ApoI	RAATTY	3 cut(s)	71, 395, 638
AsiGI	ACCGGT	1 cut(s)	735
Asp700I	GAANNNNTTC	1 cut(s)	350
AspLEI	GCGC	8 cut(s)	143, 262, 273, 299, 436, 890, 904, 991
AsuC2I	CCSGG	2 cut(s)	1040, 1076
AsuHPI	GGTGA	3 cut(s)	544, 932, 944
AsuII	TTCGAA	2 cut(s)	547, 636
AvaI	CYCGRG	1 cut(s)	764
BbsI	GAAGAC	1 cut(s)	479
BbvI	GCAGC	2 cut(s)	91, 742
BccI	CCATC	3 cut(s)	40, 833, 905
BceAI	ACGGC	3 cut(s)	48, 426, 1192
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	1 cut(s)	1195
BclI	TGATCA	4 cut(s)	160, 276, 390, 804
BcnI	CCSGG	2 cut(s)	1040, 1076
BcoDI	GTCTC	4 cut(s)	345, 592, 691, 761
BfaI	CTAG	1 cut(s)	905
BfoI	RGCGCY	2 cut(s)	263, 437
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	3 cut(s)	105, 108, 731
BlsI	GCNGC	3 cut(s)	106, 109, 732
Bme1390I	CCNGG	3 cut(s)	1040, 1076, 1195
BmeT110I	CYCGRG	1 cut(s)	764
BmgBI	CACGTC	1 cut(s)	524
BmiI	GGNNCC	3 cut(s)	223, 565, 1147
BmrFI	CCNGG	3 cut(s)	1040, 1076, 1195
BmsI	GCATC	2 cut(s)	623, 717
BpiI	GAAGAC	1 cut(s)	479
Bpu10I	CCTNAGC	1 cut(s)	122
Bpu14I	TTCGAA	2 cut(s)	547, 636
BpuEI	CTTGAG	1 cut(s)	240
BpuMI	CCSGG	2 cut(s)	1040, 1076
Bsa29I	ATCGAT	2 cut(s)	465, 675
BsaAI	YACGTR	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	1112
BsaWI	WCCGGW	2 cut(s)	554, 735
BsaXI	ACNNNNNCTCC	2 cut(s)	696, 726
Bsc4I	CCNNNNNNNGG	3 cut(s)	653, 1118, 1194
Bse118I	RCCGGY	2 cut(s)	496, 735
Bse1I	ACTGG	1 cut(s)	595
BseBI	CCWGG	1 cut(s)	1195
BseCI	ATCGAT	2 cut(s)	465, 675
BseDI	CCNNGG	1 cut(s)	1112
BseGI	GGATG	3 cut(s)	510, 643, 732
BseLI	CCNNNNNNNGG	3 cut(s)	653, 1118, 1194
BseMII	CTCAG	3 cut(s)	356, 1025, 1217
BseNI	ACTGG	1 cut(s)	595
BseRI	GAGGAG	3 cut(s)	122, 559, 1011
BseXI	GCAGC	2 cut(s)	91, 742
Bsh1236I	CGCG	5 cut(s)	271, 273, 299, 890, 902
BshFI	GGCC	2 cut(s)	496, 594
BshTI	ACCGGT	1 cut(s)	735
BshVI	ATCGAT	2 cut(s)	465, 675
BsiHKCI	CYCGRG	1 cut(s)	764
BsiSI	CCGG	8 cut(s)	230, 294, 497, 555, 595, 736, 1039, 1076
BslFI	GGGAC	1 cut(s)	979
BslI	CCNNNNNNNGG	3 cut(s)	653, 1118, 1194
BsmAI	GTCTC	4 cut(s)	345, 592, 691, 761
BsmBI	CGTCTC	1 cut(s)	761
BsmFI	GGGAC	1 cut(s)	979
BsnI	GGCC	2 cut(s)	496, 594
BsoBI	CYCGRG	1 cut(s)	764
Bsp119I	TTCGAA	2 cut(s)	547, 636
BspACI	CCGC	4 cut(s)	54, 108, 357, 1088
BspANI	GGCC	2 cut(s)	496, 594
BspCNI	CTCAG	3 cut(s)	355, 1026, 1216
BspDI	ATCGAT	2 cut(s)	465, 675
BspFNI	CGCG	5 cut(s)	271, 273, 299, 890, 902
BspLI	GGNNCC	3 cut(s)	223, 565, 1147
BspPI	GGATC	3 cut(s)	38, 671, 1176
BspT104I	TTCGAA	2 cut(s)	547, 636
BsrFI	RCCGGY	2 cut(s)	496, 735
BsrI	ACTGG	1 cut(s)	595
BssAI	RCCGGY	2 cut(s)	496, 735
BssECI	CCNNGG	1 cut(s)	1112
Bst2UI	CCWGG	1 cut(s)	1195
Bst4CI	ACNGT	5 cut(s)	101, 331, 811, 946, 1113
Bst6I	CTCTTC	3 cut(s)	918, 1004, 1131
BstBAI	YACGTR	1 cut(s)	151
BstBI	TTCGAA	2 cut(s)	547, 636
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	4 cut(s)	122, 342, 1034, 1203
BstDSI	CCRYGG	1 cut(s)	1112
BstEII	GGTNACC	1 cut(s)	1070
BstF5I	GGATG	3 cut(s)	510, 643, 732
BstFNI	CGCG	5 cut(s)	271, 273, 299, 890, 902
BstH2I	RGCGCY	2 cut(s)	263, 437
BstHHI	GCGC	8 cut(s)	143, 262, 273, 299, 436, 890, 904, 991
BstMAI	GTCTC	4 cut(s)	345, 592, 691, 761
BstMWI	GCNNNNNNNGC	6 cut(s)	251, 268, 279, 419, 611, 1085
BstNI	CCWGG	1 cut(s)	1195
BstPI	GGTNACC	1 cut(s)	1070
BstSCI	CCNGG	3 cut(s)	1038, 1074, 1193
BstSNI	TACGTA	1 cut(s)	151
BstUI	CGCG	5 cut(s)	271, 273, 299, 890, 902
BstV1I	GCAGC	2 cut(s)	91, 742
BstV2I	GAAGAC	1 cut(s)	479
BstX2I	RGATCY	2 cut(s)	25, 1168
BstYI	RGATCY	2 cut(s)	25, 1168
Bsu15I	ATCGAT	2 cut(s)	465, 675
BsuRI	GGCC	2 cut(s)	496, 594
BsuTUI	ATCGAT	2 cut(s)	465, 675
BtgI	CCRYGG	1 cut(s)	1112
BtrI	CACGTC	1 cut(s)	524
BtsCI	GGATG	3 cut(s)	510, 643, 732
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	498
CfoI	GCGC	8 cut(s)	143, 262, 273, 299, 436, 890, 904, 991
Cfr10I	RCCGGY	2 cut(s)	496, 735
ClaI	ATCGAT	2 cut(s)	465, 675
CseI	GACGC	1 cut(s)	908
CspAI	ACCGGT	1 cut(s)	735
DdeI	CTNAG	4 cut(s)	122, 342, 1034, 1203
EaeI	YGGCCR	2 cut(s)	494, 592
Eam1104I	CTCTTC	3 cut(s)	918, 1004, 1131
EarI	CTCTTC	3 cut(s)	918, 1004, 1131
EciI	GGCGGA	1 cut(s)	346
Eco105I	TACGTA	1 cut(s)	151
Eco47III	AGCGCT	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	764
Eco91I	GGTNACC	1 cut(s)	1070
EcoO65I	GGTNACC	1 cut(s)	1070
EcoRI	GAATTC	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	1193
Esp3I	CGTCTC	1 cut(s)	761
FaqI	GGGAC	1 cut(s)	979
FauI	CCCGC	1 cut(s)	1081
FbaI	TGATCA	4 cut(s)	160, 276, 390, 804
Fnu4HI	GCNGC	3 cut(s)	105, 108, 731
FokI	GGATG	3 cut(s)	497, 630, 739
Fsp4HI	GCNGC	3 cut(s)	105, 108, 731
FspBI	CTAG	1 cut(s)	905
GlaI	GCGC	8 cut(s)	142, 261, 272, 298, 435, 889, 903, 990
GluI	GCNGC	3 cut(s)	105, 108, 731
HaeII	RGCGCY	2 cut(s)	263, 437
HaeIII	GGCC	2 cut(s)	496, 594
HapII	CCGG	8 cut(s)	230, 294, 497, 555, 595, 736, 1039, 1076
HgaI	GACGC	1 cut(s)	908
HhaI	GCGC	8 cut(s)	143, 262, 273, 299, 436, 890, 904, 991
Hin6I	GCGC	8 cut(s)	141, 260, 271, 297, 434, 888, 902, 989
HinP1I	GCGC	8 cut(s)	141, 260, 271, 297, 434, 888, 902, 989
HindIII	AAGCTT	2 cut(s)	174, 847
HinfI	GANTC	9 cut(s)	237, 415, 449, 549, 600, 778, 799, 861, 939
HpaII	CCGG	8 cut(s)	230, 294, 497, 555, 595, 736, 1039, 1076
HphI	GGTGA	3 cut(s)	544, 932, 944
Hpy188III	TCNNGA	3 cut(s)	470, 764, 766
Hpy99I	CGWCG	4 cut(s)	44, 101, 245, 839
HpyAV	CCTTC	4 cut(s)	57, 647, 999, 1159
HpyCH4III	ACNGT	5 cut(s)	101, 331, 811, 946, 1113
HpyCH4IV	ACGT	3 cut(s)	150, 523, 770
HpyCH4V	TGCA	4 cut(s)	364, 481, 730, 877
HpyF10VI	GCNNNNNNNGC	6 cut(s)	251, 268, 279, 419, 611, 1085
HpyF3I	CTNAG	4 cut(s)	122, 342, 1034, 1203
HpySE526I	ACGT	3 cut(s)	150, 523, 770
HspAI	GCGC	8 cut(s)	141, 260, 271, 297, 434, 888, 902, 989
KroI	GCCGGC	1 cut(s)	496
KroNI	GCCGGC	1 cut(s)	498
Ksp22I	TGATCA	4 cut(s)	160, 276, 390, 804
LmnI	GCTCC	3 cut(s)	232, 817, 949
Lsp1109I	GCAGC	2 cut(s)	91, 742
LweI	GCATC	2 cut(s)	623, 717
MaeI	CTAG	1 cut(s)	905
MaeII	ACGT	3 cut(s)	150, 523, 770
MaeIII	GTNAC	3 cut(s)	748, 1070, 1107
MfeI	CAATTG	1 cut(s)	648
MflI	RGATCY	2 cut(s)	25, 1168
MluCI	AATT	6 cut(s)	71, 395, 543, 638, 648, 824
MlyI	GAGTC	2 cut(s)	246, 594
MmeI	TCCRAC	2 cut(s)	63, 753
MroNI	GCCGGC	1 cut(s)	496
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	1 cut(s)	623
MslI	CAYNNNNRTG	2 cut(s)	168, 812
MspI	CCGG	8 cut(s)	230, 294, 497, 555, 595, 736, 1039, 1076
MspR9I	CCNGG	3 cut(s)	1040, 1076, 1195
MunI	CAATTG	1 cut(s)	648
MvaI	CCWGG	1 cut(s)	1195
MvnI	CGCG	5 cut(s)	271, 273, 299, 890, 902
MwoI	GCNNNNNNNGC	6 cut(s)	251, 268, 279, 419, 611, 1085
NaeI	GCCGGC	1 cut(s)	498
NciI	CCSGG	2 cut(s)	1040, 1076
NgoMIV	GCCGGC	1 cut(s)	496
NlaIV	GGNNCC	3 cut(s)	223, 565, 1147
NspV	TTCGAA	2 cut(s)	547, 636
OliI	CACNNNNGTG	1 cut(s)	812
PaeR7I	CTCGAG	1 cut(s)	764
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 535
PdiI	GCCGGC	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	7 cut(s)	415, 449, 549, 778, 799, 861, 939
PinAI	ACCGGT	1 cut(s)	735
PkrI	GCNGC	3 cut(s)	106, 109, 732
PleI	GAGTC	2 cut(s)	245, 594
PpsI	GAGTC	2 cut(s)	245, 594
Ppu21I	YACGTR	1 cut(s)	151
PsiI	TTATAA	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	1193
PspEI	GGTNACC	1 cut(s)	1070
PspGI	CCWGG	1 cut(s)	1193
PspN4I	GGNNCC	3 cut(s)	223, 565, 1147
PsuI	RGATCY	2 cut(s)	25, 1168
RseI	CAYNNNNRTG	2 cut(s)	168, 812
SaqAI	TTAA	1 cut(s)	623
SatI	GCNGC	3 cut(s)	105, 108, 731
SchI	GAGTC	2 cut(s)	246, 594
ScrFI	CCNGG	3 cut(s)	1040, 1076, 1195
SfaNI	GCATC	2 cut(s)	623, 717
Sfr274I	CTCGAG	1 cut(s)	764
SfuI	TTCGAA	2 cut(s)	547, 636
SlaI	CTCGAG	1 cut(s)	764
SmiMI	CAYNNNNRTG	2 cut(s)	168, 812
SmlI	CTYRAG	2 cut(s)	255, 764
SmoI	CTYRAG	2 cut(s)	255, 764
SnaBI	TACGTA	1 cut(s)	151
Sse9I	AATT	6 cut(s)	71, 395, 543, 638, 648, 824
SsiI	CCGC	4 cut(s)	54, 108, 357, 1088
SspMI	CTAG	1 cut(s)	905
StyD4I	CCNGG	3 cut(s)	1038, 1074, 1193
TaaI	ACNGT	5 cut(s)	101, 331, 811, 946, 1113
TaiI	ACGT	3 cut(s)	153, 526, 773
TasI	AATT	6 cut(s)	71, 395, 543, 638, 648, 824
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	7 cut(s)	415, 449, 549, 778, 799, 861, 939
Tru1I	TTAA	1 cut(s)	623
Tru9I	TTAA	1 cut(s)	623
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	2 cut(s)	104, 730
TspDTI	ATGAA	4 cut(s)	446, 632, 710, 1031
TspGWI	ACGGA	9 cut(s)	158, 204, 367, 442, 456, 799, 983, 1008, 1142
TspRI	CASTG	1 cut(s)	334
XapI	RAATTY	3 cut(s)	71, 395, 638
XhoI	CTCGAG	1 cut(s)	764
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	1 cut(s)	905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.