Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014063

Physical Location & Seq

Genomic Coordinates Reverse (-)

17097564 .. 17099595

Gene Structure 2032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGGCTTCTATTTCAACCCCTTTTCCGATTTCTCTCCACCCAAAAACCGTACGATCAAAGCCGTTGAAATTCCGAGTTTTGACCCGTCCGATCAAAGCTTCCGGGTCAGAAACTCCTGATCTAACCGTAGCGACACGAACCGGATCCAAAGATCTCCCGATCCGAAACATACCGGGAAACTACGGTTTACCAATCGTAGGACCAATCAAAGACCGTTGGGATTACTTTTACGACCAAGGAGCTGAAGAGTTCTTCAAATCACGAATCCGTAAATACAACTCCACGGTGTACAGAGTCAACATGCCACCGGGAGCTTTTATCGCCGAGAATCCACAAGTCGTGGCTTTACTCGACGGTAAAAGCTTCCCGGTTTTATTCGATGTCGATAAAGTCGAAAAGAAAGATCTTTTCACCGGTACTTACATGCCGTCAACGGAACTAACCGGAGGCTACCGTATCCTCTCGTACCTCGATCCATCGGAGCCTAAACACGAAAAGCTCAAAAATCTCCTTTTCTTCCTCCTCAAGTCATCTCGAAACCGGATCTTCCCTGAGTTTCAAGCTACTTACTCCGAGCTTTTCGATTCTTTGGAGAAAGAGCTTTCCCTTAAAGGGAAAGCGGATTTCGGCGGTTCCAGCGACGGAACCGCCTTTAATTTCTTGGCTCGAGCTTTCTACGGGACGAATCCCGCAGATACAAAGCTCAAAGCCGACGCTCCGGGTTTGATCACTAAATGGGTTTTATTCAATCTCCATCCATTACTCTCTATTGGTTTACCGAGAGTTATAGAAGAACCTCTCATCCATACATTTAGTCTACCACCGGCGTTAGTCAAATCTGATTACCAGAGACTCTACGAGTTTTTCTTAGAATCCGCCGGTGAGATTCTCGTTGAAGCCGATAAATTGGGTATCTCACGAGAAGAAGCTACTCACAATCTTCTCTTCGCCACGTGCTTCAACACGTGGGGTGGGATGAAGATTTTGTTTCCGAATATGGTTAAACGTATCGGGCGGGCGGGTCATCAAGTTCATAACCGATTAGCGGAGGAGATTAGATCTGTGATTAAATCCAACGGCGGAGAACTCACGATGGGAGCGATTGAGAAAATGGAGTTAACCAAATCAGTGGTTTACGAATGTCTCCGGTTTGAACCACCGGTTACGGCTCAATACGGTAGAGCGAAGAAGGATCTGGTTATCGAAAGCCACGACGCGGCGTTTAAAGTCAAAGCCGGTGAAATGCTTTACGGTTATCAACCGTTGGCGACGAGAGATCCGAAGATTTTTGATCGGGCGGATGAGTTTGTGCCGGAGAGATTCGTCGGAGAAGAAGGAGAGAAGCTTTTGAGGCATGTGTTGTGGTCGAATGGACCGGAGACGGAGACTCCGACGGTGGGGAATAAACAATGCGCCGGTAAGGATTTTGTTGTTTTGGTGGCGAGGTTGTTTGTGATTGAGATTTTCCGGCGATATGATTCGTTTGATATTGAGGTTGGTACGTCGCCGTTAGGAAGCTCCGTTAATTTCTCGTCGTTAAGGAAAGCTAGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001676 GO:0003674 GO:0003824 GO:0004497 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0006950 GO:0006952 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009694 GO:0009695 GO:0009719 GO:0009725 GO:0009753 GO:0009941 GO:0009978 GO:0009987 GO:0010033 GO:0010287 GO:0010817 GO:0016020 GO:0016053 GO:0016125 GO:0016491 GO:0016829 GO:0016835 GO:0016836 GO:0019369 GO:0019373 GO:0019752 GO:0019825 GO:0031407 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0033559 GO:0034357 GO:0036094 GO:0042221 GO:0042445 GO:0042446 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0098542 GO:1901360 GO:1901568 GO:1901576 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

518

Amino Acids

58.2

Weight (kDa)

8.75

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	343 - 493	5.6e-17	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42650
fragaria_vesca	FvH4_2g40510
malus_domestica	MD00G1038400.v1.1 MD08G1038600.v1.1
prunus_persica	Prupe.1G386300_v2.0.a1
pyrus_communis	pycom08g03050 pycom15g03000
rosa_chinensis	RchiOBHm_Chr6g0300221
rosa_laevigata	RLG00000011356
rosa_multiflora	Rmu_sc0001670.1_g000032
rosa_roxburghii	Rroxscaffold_7G00168000
rosa_rugosa	Rorug06G0294200
rosa_samantha	Rh6AG406400 Rh6BG414300 Rh6CG421500 Rh6DG407100
rosa_wichuraiana	Rw6G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	817
AccII	CGCG	1 cut(s)	1217
AclWI	GGATC	7 cut(s)	138, 151, 154, 467, 551, 1200, 1271
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	264
AcvI	CACGTG	2 cut(s)	954, 966
AfaI	GTAC	5 cut(s)	51, 290, 418, 467, 1501
AfiI	CCNNNNNNNGG	5 cut(s)	197, 612, 1045, 1216, 1397
AflIII	ACRYGT	1 cut(s)	963
AgeI	ACCGGT	2 cut(s)	413, 1159
AgsI	TTSAA	8 cut(s)	15, 67, 256, 560, 748, 896, 961, 1154
AloI	GAACNNNNNNTCC	2 cut(s)	786, 818
Alw26I	GTCTC	4 cut(s)	844, 1148, 1373, 1379
AlwI	GGATC	7 cut(s)	138, 151, 154, 467, 551, 1200, 1271
Ama87I	CYCGRG	1 cut(s)	666
ApoI	RAATTY	1 cut(s)	68
AsiGI	ACCGGT	2 cut(s)	413, 1159
AspLEI	GCGC	1 cut(s)	1415
AspS9I	GGNCC	2 cut(s)	200, 1373
AsuC2I	CCSGG	5 cut(s)	103, 174, 309, 368, 720
AsuHPI	GGTGA	3 cut(s)	403, 893, 1250
AsuNHI	GCTAGC	1 cut(s)	1547
AvaI	CYCGRG	1 cut(s)	666
AvaII	GGWCC	2 cut(s)	200, 1373
BamHI	GGATCC	1 cut(s)	143
BauI	CACGAG	1 cut(s)	918
BbrPI	CACGTG	2 cut(s)	954, 966
BccI	CCATC	3 cut(s)	484, 762, 1087
BceAI	ACGGC	5 cut(s)	46, 412, 1093, 1182, 1492
BciVI	GTATCC	1 cut(s)	467
BclI	TGATCA	1 cut(s)	726
BcnI	CCSGG	5 cut(s)	103, 174, 309, 368, 720
BcoDI	GTCTC	4 cut(s)	844, 1148, 1373, 1379
BfaI	CTAG	1 cut(s)	1548
BfuI	GTATCC	1 cut(s)	467
BglII	AGATCT	3 cut(s)	151, 403, 1058
BisI	GCNGC	1 cut(s)	1218
BlsI	GCNGC	1 cut(s)	1219
Bme1390I	CCNGG	5 cut(s)	103, 174, 309, 368, 720
Bme18I	GGWCC	2 cut(s)	200, 1373
BmeT110I	CYCGRG	1 cut(s)	666
BmgT120I	GGNCC	2 cut(s)	200, 1373
BmiI	GGNNCC	4 cut(s)	145, 483, 634, 646
BmrFI	CCNGG	5 cut(s)	103, 174, 309, 368, 720
BmtI	GCTAGC	1 cut(s)	1551
BpuEI	CTTGAG	1 cut(s)	509
BpuMI	CCSGG	5 cut(s)	103, 174, 309, 368, 720
BsaAI	YACGTR	2 cut(s)	954, 966
BsaJI	CCNNGG	2 cut(s)	235, 282
BsaWI	WCCGGW	7 cut(s)	140, 413, 443, 540, 1146, 1159, 1375
BsaXI	ACNNNNNCTCC	2 cut(s)	1372, 1402
Bsc4I	CCNNNNNNNGG	5 cut(s)	197, 612, 1045, 1216, 1397
Bse118I	RCCGGY	6 cut(s)	413, 823, 878, 1159, 1235, 1415
BseDI	CCNNGG	2 cut(s)	235, 282
BseGI	GGATG	4 cut(s)	754, 801, 981, 1306
BseLI	CCNNNNNNNGG	5 cut(s)	197, 612, 1045, 1216, 1397
BseMII	CTCAG	1 cut(s)	543
BseRI	GAGGAG	2 cut(s)	512, 1064
Bsh1236I	CGCG	1 cut(s)	1217
BshTI	ACCGGT	2 cut(s)	413, 1159
BsiHKCI	CYCGRG	1 cut(s)	666
BsiWI	CGTACG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	694
BslI	CCNNNNNNNGG	5 cut(s)	197, 612, 1045, 1216, 1397
BsmAI	GTCTC	4 cut(s)	844, 1148, 1373, 1379
BsmBI	CGTCTC	1 cut(s)	1373
BsmFI	GGGAC	1 cut(s)	694
BsoBI	CYCGRG	1 cut(s)	666
Bsp1407I	TGTACA	1 cut(s)	288
BspCNI	CTCAG	1 cut(s)	544
BspFNI	CGCG	1 cut(s)	1217
BspLI	GGNNCC	4 cut(s)	145, 483, 634, 646
BspOI	GCTAGC	1 cut(s)	1551
BspPI	GGATC	7 cut(s)	138, 151, 154, 467, 551, 1200, 1271
BsrFI	RCCGGY	6 cut(s)	413, 823, 878, 1159, 1235, 1415
BsrGI	TGTACA	1 cut(s)	288
BssAI	RCCGGY	6 cut(s)	413, 823, 878, 1159, 1235, 1415
BssECI	CCNNGG	2 cut(s)	235, 282
BssSI	CACGAG	1 cut(s)	918
BssT1I	CCWWGG	1 cut(s)	235
Bst2BI	CACGAG	1 cut(s)	918
Bst6I	CTCTTC	2 cut(s)	240, 950
BstAUI	TGTACA	1 cut(s)	288
BstBAI	YACGTR	2 cut(s)	954, 966
BstC8I	GCNNGC	2 cut(s)	1017, 1549
BstDEI	CTNAG	2 cut(s)	552, 868
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	4 cut(s)	754, 801, 981, 1306
BstFNI	CGCG	1 cut(s)	1217
BstHHI	GCGC	1 cut(s)	1415
BstMAI	GTCTC	4 cut(s)	844, 1148, 1373, 1379
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 636, 1351
BstNSI	RCATGY	3 cut(s)	304, 427, 1358
BstSCI	CCNGG	5 cut(s)	101, 172, 307, 366, 718
BstUI	CGCG	1 cut(s)	1217
BstX2I	RGATCY	7 cut(s)	143, 151, 403, 543, 1058, 1192, 1276
BstXI	CCANNNNNNTGG	1 cut(s)	1129
BstYI	RGATCY	7 cut(s)	143, 151, 403, 543, 1058, 1192, 1276
BsuI	GTATCC	1 cut(s)	467
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	4 cut(s)	754, 801, 981, 1306
BtsIMutI	CAGTG	1 cut(s)	1134
Cac8I	GCNNGC	2 cut(s)	1017, 1549
CfoI	GCGC	1 cut(s)	1415
Cfr10I	RCCGGY	6 cut(s)	413, 823, 878, 1159, 1235, 1415
Cfr13I	GGNCC	2 cut(s)	200, 1373
CseI	GACGC	2 cut(s)	722, 1223
Csp6I	GTAC	5 cut(s)	50, 289, 417, 466, 1500
CspAI	ACCGGT	2 cut(s)	413, 1159
CviAII	CATG	3 cut(s)	301, 424, 1355
CviQI	GTAC	5 cut(s)	50, 289, 417, 466, 1500
DdeI	CTNAG	2 cut(s)	552, 868
DraI	TTTAAA	1 cut(s)	1225
Eam1104I	CTCTTC	2 cut(s)	240, 950
EarI	CTCTTC	2 cut(s)	240, 950
EciI	GGCGGA	3 cut(s)	865, 1095, 1313
Eco130I	CCWWGG	1 cut(s)	235
Eco47I	GGWCC	2 cut(s)	200, 1373
Eco57I	CTGAAG	1 cut(s)	264
Eco72I	CACGTG	2 cut(s)	954, 966
Eco88I	CYCGRG	1 cut(s)	666
EcoT14I	CCWWGG	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	235
Esp3I	CGTCTC	1 cut(s)	1373
FaeI	CATG	3 cut(s)	304, 427, 1358
FaiI	YATR	9 cut(s)	170, 302, 425, 788, 807, 998, 1035, 1356, 1476
FaqI	GGGAC	1 cut(s)	694
FatI	CATG	3 cut(s)	300, 423, 1354
FauI	CCCGC	3 cut(s)	697, 1008, 1012
FbaI	TGATCA	1 cut(s)	726
FblI	GTMKAC	1 cut(s)	817
Fnu4HI	GCNGC	1 cut(s)	1218
FokI	GGATG	4 cut(s)	741, 788, 988, 1313
Fsp4HI	GCNGC	1 cut(s)	1218
FspBI	CTAG	1 cut(s)	1548
GlaI	GCGC	1 cut(s)	1414
GluI	GCNGC	1 cut(s)	1218
HgaI	GACGC	2 cut(s)	722, 1223
HhaI	GCGC	1 cut(s)	1415
Hin1II	CATG	3 cut(s)	304, 427, 1358
Hin6I	GCGC	1 cut(s)	1413
HinP1I	GCGC	1 cut(s)	1413
HincII	GTYRAC	3 cut(s)	298, 432, 1119
HindII	GTYRAC	3 cut(s)	298, 432, 1119
HindIII	AAGCTT	3 cut(s)	96, 361, 1343
HpaI	GTTAAC	1 cut(s)	1119
HphI	GGTGA	3 cut(s)	403, 893, 1250
Hpy166II	GTNNAC	8 cut(s)	188, 289, 298, 432, 776, 818, 1119, 1135
Hpy188III	TCNNGA	6 cut(s)	116, 157, 261, 534, 918, 1090
Hpy8I	GTNNAC	8 cut(s)	188, 289, 298, 432, 776, 818, 1119, 1135
Hpy99I	CGWCG	9 cut(s)	356, 644, 716, 1217, 1273, 1328, 1396, 1507, 1537
HpyAV	CCTTC	2 cut(s)	1183, 1328
HpyCH4IV	ACGT	4 cut(s)	953, 965, 1006, 1502
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 636, 1351
HpyF3I	CTNAG	2 cut(s)	552, 868
HpySE526I	ACGT	4 cut(s)	953, 965, 1006, 1502
Hsp92II	CATG	3 cut(s)	304, 427, 1358
HspAI	GCGC	1 cut(s)	1413
Ksp22I	TGATCA	1 cut(s)	726
KspAI	GTTAAC	1 cut(s)	1119
LmnI	GCTCC	6 cut(s)	239, 311, 481, 721, 1097, 1523
MaeI	CTAG	1 cut(s)	1548
MaeII	ACGT	4 cut(s)	953, 965, 1006, 1502
MaeIII	GTNAC	1 cut(s)	1162
MflI	RGATCY	7 cut(s)	143, 151, 403, 543, 1058, 1192, 1276
MluCI	AATT	4 cut(s)	68, 655, 905, 1525
MlyI	GAGTC	3 cut(s)	303, 846, 1381
MmeI	TCCRAC	3 cut(s)	1098, 1306, 1415
MseI	TTAA	8 cut(s)	609, 654, 1002, 1068, 1118, 1224, 1524, 1538
MspR9I	CCNGG	5 cut(s)	103, 174, 309, 368, 720
MvnI	CGCG	1 cut(s)	1217
MwoI	GCNNNNNNNGC	3 cut(s)	320, 636, 1351
NciI	CCSGG	5 cut(s)	103, 174, 309, 368, 720
NheI	GCTAGC	1 cut(s)	1547
NlaIII	CATG	3 cut(s)	304, 427, 1358
NlaIV	GGNNCC	4 cut(s)	145, 483, 634, 646
NmeAIII	GCCGAG	1 cut(s)	349
NspI	RCATGY	3 cut(s)	304, 427, 1358
PaeR7I	CTCGAG	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	6 cut(s)	390, 897, 1097, 1209, 1277, 1388
PfeI	GAWTC	8 cut(s)	264, 328, 584, 685, 872, 886, 1320, 1478
Pfl23II	CGTACG	1 cut(s)	49
PinAI	ACCGGT	2 cut(s)	413, 1159
PkrI	GCNGC	1 cut(s)	1219
PleI	GAGTC	3 cut(s)	302, 846, 1381
PmaCI	CACGTG	2 cut(s)	954, 966
PmlI	CACGTG	2 cut(s)	954, 966
PpsI	GAGTC	3 cut(s)	302, 846, 1381
Ppu21I	YACGTR	2 cut(s)	954, 966
PspCI	CACGTG	2 cut(s)	954, 966
PspLI	CGTACG	1 cut(s)	49
PspN4I	GGNNCC	4 cut(s)	145, 483, 634, 646
PspPI	GGNCC	2 cut(s)	200, 1373
PspXI	VCTCGAGB	1 cut(s)	666
PsuI	RGATCY	7 cut(s)	143, 151, 403, 543, 1058, 1192, 1276
RsaI	GTAC	5 cut(s)	51, 290, 418, 467, 1501
RsaNI	GTAC	5 cut(s)	50, 289, 417, 466, 1500
SaqAI	TTAA	8 cut(s)	609, 654, 1002, 1068, 1118, 1224, 1524, 1538
SatI	GCNGC	1 cut(s)	1218
Sau96I	GGNCC	2 cut(s)	200, 1373
SchI	GAGTC	3 cut(s)	303, 846, 1381
ScrFI	CCNGG	5 cut(s)	103, 174, 309, 368, 720
Sfr274I	CTCGAG	1 cut(s)	666
SgrAI	CRCCGGYG	2 cut(s)	823, 878
SinI	GGWCC	2 cut(s)	200, 1373
SlaI	CTCGAG	1 cut(s)	666
SmlI	CTYRAG	2 cut(s)	524, 666
SmoI	CTYRAG	2 cut(s)	524, 666
Sse9I	AATT	4 cut(s)	68, 655, 905, 1525
SspMI	CTAG	1 cut(s)	1548
StyD4I	CCNGG	5 cut(s)	101, 172, 307, 366, 718
StyI	CCWWGG	1 cut(s)	235
TaiI	ACGT	4 cut(s)	956, 968, 1009, 1505
TasI	AATT	4 cut(s)	68, 655, 905, 1525
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	1220
TfiI	GAWTC	8 cut(s)	264, 328, 584, 685, 872, 886, 1320, 1478
Tru1I	TTAA	8 cut(s)	609, 654, 1002, 1068, 1118, 1224, 1524, 1538
Tru9I	TTAA	8 cut(s)	609, 654, 1002, 1068, 1118, 1224, 1524, 1538
TscAI	CASTG	1 cut(s)	1134
TspDTI	ATGAA	2 cut(s)	992, 1022
TspGWI	ACGGA	5 cut(s)	257, 449, 657, 1397, 1510
TspRI	CASTG	1 cut(s)	1134
VpaK11BI	GGWCC	2 cut(s)	200, 1373
XapI	RAATTY	1 cut(s)	68
XceI	RCATGY	3 cut(s)	304, 427, 1358
XhoI	CTCGAG	1 cut(s)	666
XmiI	GTMKAC	1 cut(s)	817
XspI	CTAG	1 cut(s)	1548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.