Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014063

Physical Location & Seq

Genomic Coordinates Forward (+)

44638197 .. 44643284

Gene Structure 5088 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0294200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3549 bp

ATGGCTGCTTCTCCATCTTCTTACAGATGCCGTTATCATGCCTTCTTGAGTTTTAGGGGTGAAGATACACGCAAGGGGTTTACGGATCATCTGTACAGAGCTTTAGAGATGGCCGGCATCCACACATTTAGAGACGATGATGAAATTGAGAGAGGAGCGGAGATAGCAGTAGAGCTGCAGAAAGCTATCCAAGAATCACAGGTATCACTGATCGTGTTTTCCAAGGATTATGCTTCCTCAAGATGGTGCTTGGATGAGCTTGCCAAGATCATGAAACGTAAAAGAAATGATGGACACATGGTTGTGCCAGTTTTCTATAAGGTGGATCCATCCGATGTTAGAAAGCAGACTGGCAGTTTTGGAGAAGCGTTTGCCAAACATGAAGAGCGCTTCAAGGAAGAGATGGCCAAGGTGGATGAGTGGAGAAGATCTCTTAGAGATGCTGCTGATCTGGGAGGGATGGTCTTAGGAGATCAGTATGAATCACAGCTGATCCAAAATATTGTTGAGGACATTGGAAATAAACTGGAACCCAAGGTATTAAATGTTGCTCCCCATATGGTTGGAATAGATGATCGTGTGAAAGGTATAAACATGTGGTTAAGAGATGGATCAGCTGATGTTGGTGTAGCTGGAATTTATGGAATGGGTGGAATTGGCAAAACCACCATTGCAAAAGTTGCTTATAACATGAACTTGGATAGCTTTCAAGGAAGTAGCTTTGTTGCAGATATTAGGGCAACTTCAGAACAACCTAATGGTTTGGTTCGCTTGCAAATGAAACTTTTATCTGATATCCAGAAGCAGAATTCGAAGCCAAAGAAGATATACTCTGTTGATGAAGGTATGAGCCGGATCAAGCACATTGTATGTTGCAAAAGAGTTCTTATTGTTCTTGATGATGTAAACGATTTGGACCAATTCGGTGCAATTCTTGGAATGCGAGAATGGTTTCATCCTGGAAGTAAGATTATCATAACAACTAGACATCAACACTTGCTAATCACAAATGGGATTTCTAAAATGTTCGCAGTTCAAAAACTACTTGAGCAAGAATCACTTGAGCTCTTCAGTTGGCATGCTTTTAGACAAGTTTATCCTATCCAAAGCTACATGGAGCTTTCTACAGCTGTAGCACAACGTTGTGGAGGGCTTCCATTAGCTCTTCAAGTTTTGGGGTCTTCTCTATTTGGAAAGAGCGAAGATGTTTGGAAAAATGCAATTGAGAAATTGGACGTGATTCCCGATGGAAAAGTTCAGAAAGTTCTTAGAATAAGCTTTGATACTCTACAAGATGATCATGACAAAAGTTTATTCCTTCATATGGCATGTTTCTTCACGGGGAAGGAGAAAATTTTTACAATTACAGTACTGGATAACCTTGAATTTTTCACAAGAATTGGAATTCAAAATCTAGTTGATAGATGTTTAGTGCAAATTGATCATGATGACAAGTTGATCATGCATCAATTACTGATTGACATGGCAAGGGAAATTATTCGCCAAGAGTCACCAGAGAACCCTGGAAAACGTAGTCGGGTGTGGCATAAGGATGCATCTAATGTCTTGGAGAACATAACTGGTACAGAAACTATTAAGGGTCTCATGCTCAACCTTCATAAGGAAAATACACTTTCTAACACTAAACGATGCCATGCTGAAGAGTATGATGGAAATTGTTCCAGACCGCGTTGGCTTGGTTTCTTCTCATGGAAATCAAATAACTTTTCCTTAACAGAGTTAGATTCAGATGAGGGAAACTTCAAAACAGAGGCATTTAAAGGGATGCATAATCTGAAAATTCTTCTGCTCAATAATGTAAAATTCAGTGGTTGCTATAACGACTTTCCAAAAAAATTATCCTGGTTGTGTTGGCAAGGGTTTCCTTCAGAATCTATACCCAAGGAATTTCATTTGCGAACTCTAGTTGTTCTTGAGTTGCAGAATAGCAAACTGAAATTTGTTTGGGAGGGGAAAAAGACTCTGCCGAGATTAAAAATCCTTGATCTCAGTCATTCACTTGGTCTTGTTACAACCCCTGACTTGTCAGGACTCTCTAACCTTGAGAGATTAATCCTTAATGGTTGCACAAACATCGCTGAGATTGATGAATCCATTGGTGACCTTGAGAATCTTGTTTTCTTGAATCTTGAAGACTGCAAAAATCTCGAGAAGCTCCCAGAAACAATTTGCAAGTTGACATCCCTCAAAGAGCTTAACCTTTCAGGTTGTTCAAAGCTTGCTCTTCATTCTAATACAGCAACTGATATGAAGAATTTCTTCAGCCTGTTATCAAATAAATCATGGCAATCAATTTGGTCGCATGTATCACCAAGAAAAGGTGTTGAACCAACAGGTTTGTCATTGGTAAATTTGCCACATTCTATAGTACGGTTAAGTCTGGCTCATTGCCATCTGTCAGAGATTCCCAATGATCTTCATATCTTTTCCTCATTGAAGGAACTGGATCTAAGTGGGAATCAATTTATGAGTCTACCTGAAAACATGAAGAATATCATTGTCCTCAAGTCTCTTCGATTAAACGGTTGCACAAACCTCATAATGCTTCCGGAGCTCCCACCGAATTTAGATGAGTTTTTTGCAATCAATTGTACATCAGTGAAAAAACTTCCAAGTTTACCAAATACATCGATTAATATACTTATCGGTTGTGGAGAATTAGTTGAAGTTCAAAGTGTCTTCAGTATAAGGCCATTGATCGGCGAGCTTGACATGGAAATGATAAGAAATATGGGCCTGTGCAATTTGGAACCCTTTGGACGCACTGAGGAGCTTGAAATGATAAATTGCTTGACATCAACAACCAGGACATGTCCCCTCCAGGGGCTGTATGAATGTGGCATATTCAGCATTTTCCTTCATGGAAGCATGATTCCTAATTGGTACAAGTACAGGGGTGAAACCGCCTTGTCTATCATTGTTCCTTCCCATCCTAAACTCAAGATCAAAGGCTTAAATGTCTGTGTTGTGTACACCAGAGATTGTGTTGTGCACAAATTTGAGTTGTATATTTCACTCTTTCTAAAAGTCAGTAATGAAGCGAAGGGTCTTATGTGGTCATATTCCCCTGTTAGTGTTGGTCGCCCAAAAGAGAATGAAGAAATGTCATGGCTAAGCCATTGGCAGTTTGAGAATGATGAGTTAGAGGGTGGGGAAGAACTATGTTTTTCTGTCGATACCGAAGATGTTCGGTTCTTGATAAAGGAGATTGGAGTCCAACTTGTGTACGAGCATGAAAATGAGGGCAAGGCATGTAATGGTATCCAATCATCAATTCCTGAAGATGTTACAACCCAACATGAGGCACCTTCTTGGAGCCAGGGTGTCCTCATTGAACATGTAGCGGCACCAAAGTATCAAATTTGGCCGGGCAAATACTTCCTTTGCAATCATTACTCATTTCCTGGTCGTTTTGATTTTTCAAAAGCATACCCCATGGGTGGTTACCGCCGTATATTTGAACACCAAGATTTTGAGAAACGTGTCTTGGGACAAAAAAATCTTTTACGAGGAACGTGTTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001676 GO:0003674 GO:0003824 GO:0004497 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0006950 GO:0006952 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009694 GO:0009695 GO:0009719 GO:0009725 GO:0009753 GO:0009941 GO:0009978 GO:0009987 GO:0010033 GO:0010287 GO:0010817 GO:0016020 GO:0016053 GO:0016125 GO:0016491 GO:0016829 GO:0016835 GO:0016836 GO:0019369 GO:0019373 GO:0019752 GO:0019825 GO:0031407 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0033559 GO:0034357 GO:0036094 GO:0042221 GO:0042445 GO:0042446 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0098542 GO:1901360 GO:1901568 GO:1901576 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

1182

Amino Acids

134.25

Weight (kDa)

6.25

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	12 - 180	8.5e-53	TIR domain
TIR_2	PF13676	15 - 110	3.8e-16	TIR domain
NB-ARC	PF00931	193 - 363	2.9e-18	NB-ARC domain
WHD_ROQ1	PF23282	433 - 504	6.1e-16	Disease resistance protein Roq1-like, winged-helix domain
LRR_14	PF23598	660 - 747	3.6e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42650
fragaria_vesca	FvH4_2g40510
malus_domestica	MD00G1038400.v1.1 MD08G1038600.v1.1
prunus_persica	Prupe.1G386300_v2.0.a1
pyrus_communis	pycom08g03050 pycom15g03000
rosa_chinensis	RchiOBHm_Chr6g0300221
rosa_laevigata	RLG00000011356
rosa_multiflora	Rmu_sc0001670.1_g000032
rosa_roxburghii	Rroxscaffold_7G00168000
rosa_rugosa	Rorug06G0294200
rosa_samantha	Rh6AG406400 Rh6BG414300 Rh6CG421500 Rh6DG407100
rosa_wichuraiana	Rw6G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	687
AccB1I	GGYRCC	2 cut(s)	3325, 3367
AccBSI	CCGCTC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	2494
AccII	CGCG	1 cut(s)	1690
AccIII	TCCGGA	1 cut(s)	2569
AciI	CCGC	5 cut(s)	158, 1688, 2925, 3365, 3469
AclI	AACGTT	1 cut(s)	1141
AclWI	GGATC	7 cut(s)	93, 320, 333, 487, 619, 863, 2475
AcoI	YGGCCR	3 cut(s)	111, 405, 3386
AcuI	CTGAAG	7 cut(s)	729, 1054, 1680, 1872, 2266, 2686, 3321
AfaI	GTAC	9 cut(s)	95, 1371, 1585, 2391, 2614, 2906, 2912, 2993, 3248
AfeI	AGCGCT	1 cut(s)	389
AfiI	CCNNNNNNNGG	9 cut(s)	243, 1324, 1621, 2339, 2720, 2843, 2844, 3322, 3461
AflIII	ACRYGT	5 cut(s)	594, 2831, 3358, 3502, 3536
AjiI	CACGTC	1 cut(s)	1237
AjnI	CCWGG	7 cut(s)	958, 1522, 1862, 2825, 2841, 3339, 3424
AjuI	GAANNNNNNNTTGG	4 cut(s)	3279, 3311, 3491, 3523
Alw21I	GWGCWC	3 cut(s)	1068, 2577, 3015
Alw26I	GTCTC	3 cut(s)	126, 1607, 2535
Alw44I	GTGCAC	1 cut(s)	3011
AlwI	GGATC	7 cut(s)	93, 320, 333, 487, 619, 863, 2475
AlwNI	CAGNNNCTG	2 cut(s)	2264, 2848
Ama87I	CYCGRG	1 cut(s)	2168
Aor13HI	TCCGGA	1 cut(s)	2569
Aor51HI	AGCGCT	1 cut(s)	389
AoxI	GGCC	5 cut(s)	111, 405, 2711, 2755, 3386
ApaLI	GTGCAC	1 cut(s)	3011
ApeKI	GCWGC	3 cut(s)	5, 175, 443
AseI	ATTAAT	2 cut(s)	2072, 2655
Asp700I	GAANNNNTTC	6 cut(s)	951, 1497, 1678, 2276, 2279, 3207
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	2 cut(s)	916, 2755
AsuC2I	CCSGG	1 cut(s)	3390
AsuHPI	GGTGA	5 cut(s)	71, 1503, 2132, 2322, 2930
AsuII	TTCGAA	1 cut(s)	812
AvaI	CYCGRG	1 cut(s)	2168
AvaII	GGWCC	1 cut(s)	916
BaeGI	GKGCMC	1 cut(s)	3015
BaeI	ACNNNNGTAYC	2 cut(s)	3359, 3392
BalI	TGGCCA	1 cut(s)	407
BamHI	GGATCC	1 cut(s)	325
BanI	GGYRCC	2 cut(s)	3325, 3367
BanII	GRGCYC	2 cut(s)	1068, 2577
BbsI	GAAGAC	3 cut(s)	1173, 2160, 2692
Bbv12I	GWGCWC	3 cut(s)	1068, 2577, 3015
BbvI	GCAGC	2 cut(s)	162, 430
BceAI	ACGGC	2 cut(s)	15, 3456
BcgI	CGANNNNNNTGC	4 cut(s)	2077, 2111, 2149, 2183
BciT130I	CCWGG	7 cut(s)	960, 1524, 1864, 2827, 2843, 3341, 3426
BciVI	GTATCC	1 cut(s)	3293
BclI	TGATCA	3 cut(s)	1297, 1441, 1458
BcnI	CCSGG	1 cut(s)	3390
BcoDI	GTCTC	3 cut(s)	126, 1607, 2535
BfaI	CTAG	3 cut(s)	984, 1415, 1925
BfmI	CTRYAG	4 cut(s)	176, 1125, 1131, 2385
BfoI	RGCGCY	1 cut(s)	391
BfuI	GTATCC	1 cut(s)	3293
BglII	AGATCT	1 cut(s)	428
BisI	GCNGC	4 cut(s)	6, 176, 444, 3366
BlpI	GCTNAGC	1 cut(s)	3134
BlsI	GCNGC	4 cut(s)	7, 177, 445, 3367
BmcAI	AGTACT	1 cut(s)	1371
Bme1390I	CCNGG	8 cut(s)	960, 1524, 1864, 2827, 2843, 3341, 3390, 3426
Bme18I	GGWCC	1 cut(s)	916
BmeT110I	CYCGRG	1 cut(s)	2168
BmgBI	CACGTC	1 cut(s)	1237
BmgT120I	GGNCC	2 cut(s)	916, 2755
BmiI	GGNNCC	6 cut(s)	327, 531, 2772, 3327, 3338, 3369
BmrFI	CCNGG	8 cut(s)	960, 1524, 1864, 2827, 2843, 3341, 3390, 3426
BmsI	GCATC	8 cut(s)	17, 126, 430, 1474, 1543, 1565, 1640, 1776
BpiI	GAAGAC	3 cut(s)	1173, 2160, 2692
BplI	GAGNNNNNCTC	2 cut(s)	415, 447
BpmI	CTGGAG	1 cut(s)	2825
Bpu1102I	GCTNAGC	1 cut(s)	3134
Bpu14I	TTCGAA	1 cut(s)	812
BpuEI	CTTGAG	9 cut(s)	67, 223, 1067, 1082, 1955, 2084, 2147, 2510, 2945
BpuMI	CCSGG	1 cut(s)	3390
Bsa29I	ATCGAT	1 cut(s)	2651
BsaI	GGTCTC	1 cut(s)	1607
BsaJI	CCNNGG	8 cut(s)	222, 408, 534, 1522, 1902, 2842, 3340, 3456
BsaWI	WCCGGW	1 cut(s)	2569
BsaXI	ACNNNNNCTCC	6 cut(s)	447, 477, 2667, 2697, 3328, 3358
Bsc4I	CCNNNNNNNGG	9 cut(s)	243, 1324, 1621, 2339, 2720, 2843, 2844, 3322, 3461
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	6 cut(s)	308, 355, 531, 1377, 1585, 2469
Bse3DI	GCAATG	2 cut(s)	669, 2407
BseAI	TCCGGA	1 cut(s)	2569
BseBI	CCWGG	7 cut(s)	960, 1524, 1864, 2827, 2843, 3341, 3426
BseCI	ATCGAT	1 cut(s)	2651
BseDI	CCNNGG	8 cut(s)	222, 408, 534, 1522, 1902, 2842, 3340, 3456
BseLI	CCNNNNNNNGG	9 cut(s)	243, 1324, 1621, 2339, 2720, 2843, 2844, 3322, 3461
BseMI	GCAATG	2 cut(s)	669, 2407
BseMII	CTCAG	3 cut(s)	2023, 2091, 2778
BseNI	ACTGG	6 cut(s)	308, 355, 531, 1377, 1585, 2469
BseRI	GAGGAG	2 cut(s)	168, 2804
BseSI	GKGCMC	1 cut(s)	3015
BseXI	GCAGC	2 cut(s)	162, 430
Bsh1236I	CGCG	1 cut(s)	1690
BshFI	GGCC	5 cut(s)	113, 407, 2713, 2757, 3388
BshNI	GGYRCC	2 cut(s)	3325, 3367
BshVI	ATCGAT	1 cut(s)	2651
BsiHKAI	GWGCWC	3 cut(s)	1068, 2577, 3015
BsiHKCI	CYCGRG	1 cut(s)	2168
BsiSI	CCGG	4 cut(s)	114, 853, 2570, 3389
BslFI	GGGAC	2 cut(s)	2820, 3525
BslI	CCNNNNNNNGG	9 cut(s)	243, 1324, 1621, 2339, 2720, 2843, 2844, 3322, 3461
BsmAI	GTCTC	3 cut(s)	126, 1607, 2535
BsmBI	CGTCTC	1 cut(s)	126
BsmFI	GGGAC	2 cut(s)	2820, 3525
BsmI	GAATGC	1 cut(s)	945
BsnI	GGCC	5 cut(s)	113, 407, 2713, 2757, 3388
Bso31I	GGTCTC	1 cut(s)	1607
BsoBI	CYCGRG	1 cut(s)	2168
Bsp119I	TTCGAA	1 cut(s)	812
Bsp1286I	GDGCHC	3 cut(s)	1068, 2577, 3015
Bsp13I	TCCGGA	1 cut(s)	2569
Bsp1407I	TGTACA	3 cut(s)	93, 2612, 2991
Bsp1720I	GCTNAGC	1 cut(s)	3134
Bsp19I	CCATGG	1 cut(s)	3456
BspACI	CCGC	5 cut(s)	158, 1688, 2925, 3365, 3469
BspANI	GGCC	5 cut(s)	113, 407, 2713, 2757, 3388
BspCNI	CTCAG	3 cut(s)	2022, 2092, 2779
BspDI	ATCGAT	1 cut(s)	2651
BspEI	TCCGGA	1 cut(s)	2569
BspFNI	CGCG	1 cut(s)	1690
BspHI	TCATGA	3 cut(s)	270, 1300, 1444
BspLI	GGNNCC	6 cut(s)	327, 531, 2772, 3327, 3338, 3369
BspMAI	CTGCAG	1 cut(s)	180
BspPI	GGATC	7 cut(s)	93, 320, 333, 487, 619, 863, 2475
BspQI	GCTCTTC	4 cut(s)	378, 1073, 1170, 2250
BspT104I	TTCGAA	1 cut(s)	812
BspT107I	GGYRCC	2 cut(s)	3325, 3367
BspTNI	GGTCTC	1 cut(s)	1607
BsrBI	CCGCTC	1 cut(s)	158
BsrDI	GCAATG	2 cut(s)	669, 2407
BsrFI	RCCGGY	1 cut(s)	113
BsrGI	TGTACA	3 cut(s)	93, 2612, 2991
BsrI	ACTGG	6 cut(s)	308, 355, 531, 1377, 1585, 2469
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	8 cut(s)	222, 408, 534, 1522, 1902, 2842, 3340, 3456
BssT1I	CCWWGG	5 cut(s)	222, 408, 534, 1902, 3456
Bst2UI	CCWGG	7 cut(s)	960, 1524, 1864, 2827, 2843, 3341, 3426
Bst4CI	ACNGT	3 cut(s)	1369, 2394, 2546
Bst6I	CTCTTC	7 cut(s)	378, 393, 1073, 1170, 1656, 2250, 2538
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstAUI	TGTACA	3 cut(s)	93, 2612, 2991
BstBI	TTCGAA	1 cut(s)	812
BstC8I	GCNNGC	6 cut(s)	115, 261, 773, 1080, 2241, 2726
BstDEI	CTNAG	8 cut(s)	434, 466, 1268, 2009, 2100, 2471, 2787, 3134
BstDSI	CCRYGG	1 cut(s)	3456
BstEII	GGTNACC	2 cut(s)	2120, 3464
BstENI	CCTNNNNNAGG	1 cut(s)	1619
BstFNI	CGCG	1 cut(s)	1690
BstH2I	RGCGCY	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	390
BstMAI	GTCTC	3 cut(s)	126, 1607, 2535
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 680, 2572, 2868
BstNI	CCWGG	7 cut(s)	960, 1524, 1864, 2827, 2843, 3341, 3426
BstNSI	RCATGY	7 cut(s)	598, 1082, 1332, 2327, 2835, 3276, 3362
BstPI	GGTNACC	2 cut(s)	2120, 3464
BstSCI	CCNGG	8 cut(s)	958, 1522, 1862, 2825, 2841, 3339, 3388, 3424
BstSFI	CTRYAG	4 cut(s)	176, 1125, 1131, 2385
BstSLI	GKGCMC	1 cut(s)	3015
BstUI	CGCG	1 cut(s)	1690
BstV1I	GCAGC	2 cut(s)	162, 430
BstV2I	GAAGAC	3 cut(s)	1173, 2160, 2692
BstX2I	RGATCY	3 cut(s)	325, 428, 2467
BstXI	CCANNNNNNTGG	1 cut(s)	563
BstYI	RGATCY	3 cut(s)	325, 428, 2467
Bsu15I	ATCGAT	1 cut(s)	2651
BsuI	GTATCC	1 cut(s)	3293
BsuRI	GGCC	5 cut(s)	113, 407, 2713, 2757, 3388
BsuTUI	ATCGAT	1 cut(s)	2651
BtgI	CCRYGG	1 cut(s)	3456
BtgZI	GCGATG	1 cut(s)	2080
BtrI	CACGTC	1 cut(s)	1237
BtsIMutI	CAGTG	4 cut(s)	206, 1834, 2625, 2784
Cac8I	GCNNGC	6 cut(s)	115, 261, 773, 1080, 2241, 2726
CaiI	CAGNNNCTG	2 cut(s)	2264, 2848
CciI	TCATGA	3 cut(s)	270, 1300, 1444
CfoI	GCGC	1 cut(s)	390
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	916, 2755
ClaI	ATCGAT	1 cut(s)	2651
CseI	GACGC	1 cut(s)	2790
Csp6I	GTAC	9 cut(s)	94, 1370, 1584, 2390, 2613, 2905, 2911, 2992, 3247
CviQI	GTAC	9 cut(s)	94, 1370, 1584, 2390, 2613, 2905, 2911, 2992, 3247
DdeI	CTNAG	8 cut(s)	434, 466, 1268, 2009, 2100, 2471, 2787, 3134
DraI	TTTAAA	1 cut(s)	1780
EaeI	YGGCCR	3 cut(s)	111, 405, 3386
Eam1104I	CTCTTC	7 cut(s)	378, 393, 1073, 1170, 1656, 2250, 2538
EarI	CTCTTC	7 cut(s)	378, 393, 1073, 1170, 1656, 2250, 2538
Ecl136II	GAGCTC	2 cut(s)	1066, 2575
Eco130I	CCWWGG	5 cut(s)	222, 408, 534, 1902, 3456
Eco24I	GRGCYC	2 cut(s)	1068, 2577
Eco31I	GGTCTC	1 cut(s)	1607
Eco32I	GATATC	1 cut(s)	796
Eco47I	GGWCC	1 cut(s)	916
Eco47III	AGCGCT	1 cut(s)	389
Eco53kI	GAGCTC	2 cut(s)	1066, 2575
Eco57I	CTGAAG	7 cut(s)	729, 1054, 1680, 1872, 2266, 2686, 3321
Eco88I	CYCGRG	1 cut(s)	2168
Eco91I	GGTNACC	2 cut(s)	2120, 3464
EcoICRI	GAGCTC	2 cut(s)	1066, 2575
EcoNI	CCTNNNNNAGG	1 cut(s)	1619
EcoO65I	GGTNACC	2 cut(s)	2120, 3464
EcoRI	GAATTC	2 cut(s)	808, 1404
EcoRII	CCWGG	7 cut(s)	958, 1522, 1862, 2825, 2841, 3339, 3424
EcoRV	GATATC	1 cut(s)	796
EcoT14I	CCWWGG	5 cut(s)	222, 408, 534, 1902, 3456
EcoT22I	ATGCAT	3 cut(s)	1467, 1558, 1791
EcoT38I	GRGCYC	2 cut(s)	1068, 2577
ErhI	CCWWGG	5 cut(s)	222, 408, 534, 1902, 3456
Esp3I	CGTCTC	1 cut(s)	126
FalI	AAGNNNNNCTT	4 cut(s)	1044, 1076, 2264, 2296
FaqI	GGGAC	2 cut(s)	2820, 3525
FauNDI	CATATG	2 cut(s)	558, 1323
FbaI	TGATCA	3 cut(s)	1297, 1441, 1458
FblI	GTMKAC	1 cut(s)	2494
Fnu4HI	GCNGC	4 cut(s)	6, 176, 444, 3366
FriOI	GRGCYC	2 cut(s)	1068, 2577
Fsp4HI	GCNGC	4 cut(s)	6, 176, 444, 3366
FspBI	CTAG	3 cut(s)	984, 1415, 1925
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	4 cut(s)	6, 176, 444, 3366
GsuI	CTGGAG	1 cut(s)	2825
HaeII	RGCGCY	1 cut(s)	391
HaeIII	GGCC	5 cut(s)	113, 407, 2713, 2757, 3388
HapII	CCGG	4 cut(s)	114, 853, 2570, 3389
HgaI	GACGC	1 cut(s)	2790
HhaI	GCGC	1 cut(s)	390
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HincII	GTYRAC	1 cut(s)	2199
HindII	GTYRAC	1 cut(s)	2199
HindIII	AAGCTT	2 cut(s)	1276, 2237
HpaII	CCGG	4 cut(s)	114, 853, 2570, 3389
HphI	GGTGA	5 cut(s)	71, 1503, 2132, 2322, 2930
Hpy166II	GTNNAC	9 cut(s)	81, 907, 2199, 2495, 2639, 2992, 2994, 3013, 3247
Hpy188I	TCNGA	8 cut(s)	334, 748, 793, 1260, 1750, 1797, 1891, 2422
Hpy8I	GTNNAC	9 cut(s)	81, 907, 2199, 2495, 2639, 2992, 2994, 3013, 3247
HpyCH4III	ACNGT	3 cut(s)	1369, 2394, 2546
HpyCH4IV	ACGT	6 cut(s)	277, 1141, 1236, 1531, 3502, 3536
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 680, 2572, 2868
HpyF3I	CTNAG	8 cut(s)	434, 466, 1268, 2009, 2100, 2471, 2787, 3134
HpySE526I	ACGT	6 cut(s)	277, 1141, 1236, 1531, 3502, 3536
HspAI	GCGC	1 cut(s)	388
Kpn2I	TCCGGA	1 cut(s)	2569
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Ksp22I	TGATCA	3 cut(s)	1297, 1441, 1458
LguI	GCTCTTC	4 cut(s)	378, 1073, 1170, 2250
LmnI	GCTCC	8 cut(s)	155, 556, 1117, 2181, 2572, 2580, 2791, 3336
Lsp1109I	GCAGC	2 cut(s)	162, 430
LweI	GCATC	8 cut(s)	17, 126, 430, 1474, 1543, 1565, 1640, 1776
MaeI	CTAG	3 cut(s)	984, 1415, 1925
MaeII	ACGT	6 cut(s)	277, 1141, 1236, 1531, 3502, 3536
MaeIII	GTNAC	5 cut(s)	1509, 2029, 2120, 3307, 3464
MbiI	CCGCTC	1 cut(s)	158
MfeI	CAATTG	2 cut(s)	1221, 2608
MflI	RGATCY	3 cut(s)	325, 428, 2467
MhlI	GDGCHC	3 cut(s)	1068, 2577, 3015
MlsI	TGGCCA	1 cut(s)	407
MluNI	TGGCCA	1 cut(s)	407
MlyI	GAGTC	5 cut(s)	1517, 1975, 2046, 2500, 3243
MmeI	TCCRAC	2 cut(s)	544, 3262
Mox20I	TGGCCA	1 cut(s)	407
Mph1103I	ATGCAT	3 cut(s)	1467, 1558, 1791
MroI	TCCGGA	1 cut(s)	2569
MroNI	GCCGGC	1 cut(s)	113
MroXI	GAANNNNTTC	6 cut(s)	951, 1497, 1678, 2276, 2279, 3207
MscI	TGGCCA	1 cut(s)	407
MslI	CAYNNNNRTG	4 cut(s)	302, 1551, 2738, 3258
Msp20I	TGGCCA	1 cut(s)	407
MspA1I	CMGCKG	3 cut(s)	490, 617, 1130
MspI	CCGG	4 cut(s)	114, 853, 2570, 3389
MspR9I	CCNGG	8 cut(s)	960, 1524, 1864, 2827, 2843, 3341, 3390, 3426
MunI	CAATTG	2 cut(s)	1221, 2608
Mva1269I	GAATGC	1 cut(s)	945
MvaI	CCWGG	7 cut(s)	960, 1524, 1864, 2827, 2843, 3341, 3426
MvnI	CGCG	1 cut(s)	1690
MwoI	GCNNNNNNNGC	4 cut(s)	164, 680, 2572, 2868
NaeI	GCCGGC	1 cut(s)	115
NciI	CCSGG	1 cut(s)	3390
NcoI	CCATGG	1 cut(s)	3456
NdeI	CATATG	2 cut(s)	558, 1323
NgoMIV	GCCGGC	1 cut(s)	113
NlaIV	GGNNCC	6 cut(s)	327, 531, 2772, 3327, 3338, 3369
NmeAIII	GCCGAG	1 cut(s)	2013
NmuCI	GTSAC	2 cut(s)	1509, 2120
NsiI	ATGCAT	3 cut(s)	1467, 1558, 1791
NspI	RCATGY	7 cut(s)	598, 1082, 1332, 2327, 2835, 3276, 3362
NspV	TTCGAA	1 cut(s)	812
PaeI	GCATGC	1 cut(s)	1082
PaeR7I	CTCGAG	1 cut(s)	2168
PagI	TCATGA	3 cut(s)	270, 1300, 1444
PciI	ACATGT	3 cut(s)	594, 2831, 3358
PciSI	GCTCTTC	4 cut(s)	378, 1073, 1170, 2250
PcsI	WCGNNNNNNNCGW	1 cut(s)	1242
PctI	GAATGC	1 cut(s)	945
PdiI	GCCGGC	1 cut(s)	115
PdmI	GAANNNNTTC	6 cut(s)	951, 1497, 1678, 2276, 2279, 3207
PfoI	TCCNGGA	1 cut(s)	958
PkrI	GCNGC	4 cut(s)	7, 177, 445, 3367
PleI	GAGTC	5 cut(s)	1516, 1975, 2046, 2499, 3242
PpsI	GAGTC	5 cut(s)	1516, 1975, 2046, 2499, 3242
PscI	ACATGT	3 cut(s)	594, 2831, 3358
PshBI	ATTAAT	2 cut(s)	2072, 2655
PsiI	TTATAA	1 cut(s)	687
Psp124BI	GAGCTC	2 cut(s)	1068, 2577
Psp1406I	AACGTT	1 cut(s)	1141
Psp6I	CCWGG	7 cut(s)	958, 1522, 1862, 2825, 2841, 3339, 3424
PspEI	GGTNACC	2 cut(s)	2120, 3464
PspGI	CCWGG	7 cut(s)	958, 1522, 1862, 2825, 2841, 3339, 3424
PspN4I	GGNNCC	6 cut(s)	327, 531, 2772, 3327, 3338, 3369
PspPI	GGNCC	2 cut(s)	916, 2755
PstI	CTGCAG	1 cut(s)	180
PstNI	CAGNNNCTG	2 cut(s)	2264, 2848
PsuI	RGATCY	3 cut(s)	325, 428, 2467
PvuII	CAGCTG	3 cut(s)	490, 617, 1130
RsaI	GTAC	9 cut(s)	95, 1371, 1585, 2391, 2614, 2906, 2912, 2993, 3248
RsaNI	GTAC	9 cut(s)	94, 1370, 1584, 2390, 2613, 2905, 2911, 2992, 3247
RseI	CAYNNNNRTG	4 cut(s)	302, 1551, 2738, 3258
SacI	GAGCTC	2 cut(s)	1068, 2577
SapI	GCTCTTC	4 cut(s)	378, 1073, 1170, 2250
SatI	GCNGC	4 cut(s)	6, 176, 444, 3366
Sau96I	GGNCC	2 cut(s)	916, 2755
ScaI	AGTACT	1 cut(s)	1371
SchI	GAGTC	5 cut(s)	1517, 1975, 2046, 2500, 3243
ScrFI	CCNGG	8 cut(s)	960, 1524, 1864, 2827, 2843, 3341, 3390, 3426
SduI	GDGCHC	3 cut(s)	1068, 2577, 3015
SfaNI	GCATC	8 cut(s)	17, 126, 430, 1474, 1543, 1565, 1640, 1776
SfcI	CTRYAG	4 cut(s)	176, 1125, 1131, 2385
Sfr274I	CTCGAG	1 cut(s)	2168
SfuI	TTCGAA	1 cut(s)	812
SinI	GGWCC	1 cut(s)	916
SlaI	CTCGAG	1 cut(s)	2168
SmiMI	CAYNNNNRTG	4 cut(s)	302, 1551, 2738, 3258
SphI	GCATGC	1 cut(s)	1082
SsiI	CCGC	5 cut(s)	158, 1688, 2925, 3365, 3469
SspI	AATATT	1 cut(s)	502
SspMI	CTAG	3 cut(s)	984, 1415, 1925
SstI	GAGCTC	2 cut(s)	1068, 2577
StyD4I	CCNGG	8 cut(s)	958, 1522, 1862, 2825, 2841, 3339, 3388, 3424
StyI	CCWWGG	5 cut(s)	222, 408, 534, 1902, 3456
TaaI	ACNGT	3 cut(s)	1369, 2394, 2546
TaiI	ACGT	6 cut(s)	280, 1144, 1239, 1534, 3505, 3539
TaqI	TCGA	5 cut(s)	812, 2169, 2536, 2651, 3195
TatI	WGTACW	5 cut(s)	93, 1369, 2612, 2910, 2991
TauI	GCSGC	1 cut(s)	3368
TscAI	CASTG	4 cut(s)	213, 1834, 2625, 2791
TseFI	GTSAC	2 cut(s)	1509, 2120
TseI	GCWGC	3 cut(s)	5, 175, 443
Tsp45I	GTSAC	2 cut(s)	1509, 2120
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	4 cut(s)	213, 1834, 2625, 2791
VneI	GTGCAC	1 cut(s)	3011
VpaK11BI	GGWCC	1 cut(s)	916
VspI	ATTAAT	2 cut(s)	2072, 2655
XagI	CCTNNNNNAGG	1 cut(s)	1619
XceI	RCATGY	7 cut(s)	598, 1082, 1332, 2327, 2835, 3276, 3362
XhoI	CTCGAG	1 cut(s)	2168
XmiI	GTMKAC	1 cut(s)	2494
XmnI	GAANNNNTTC	6 cut(s)	951, 1497, 1678, 2276, 2279, 3207
XspI	CTAG	3 cut(s)	984, 1415, 1925
ZrmI	AGTACT	1 cut(s)	1371
Zsp2I	ATGCAT	3 cut(s)	1467, 1558, 1791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.