Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007720

Physical Location & Seq

Genomic Coordinates Forward (+)

17166702 .. 17169459

Gene Structure 2758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGGAGATGATTTTGGAGGAGAAAGATGCATCAGATTGGATTTACAGAGGCGAAGGTGGTGCCAATCTCGTTCTTGCTTACGCTGGATCTTCTCCACTTTTTGTTGGGAAAGTGATTCGTATACAGAAGGCTCGGAGGAATGATAAAGCAATCAAGAATGCGAATGGTGTTGTTTCGGTTTTAACAAGCGATGAGCAACATCTATGGAGAGAAAACAATGAGCTGATTTCATCACCAAACAAGGAAGTTCTTGAACAAAGATATGTTAAGAATGTGATCATCCCACTCTTGGGTCCTAAACATGTTGATGCTGGAGTACGTGTTTCTGTGTCCAAGGAGTTTCTTGAGTGTGTTGATAAGAAAGTAACTAAGCAGCGTCCGCTATGGCGTGTTAATGCAGCAAATGTTGATACGAGTCATGATTCTGCCCTTATATTGAATGATCATTCACTTTTTTCTCAAGGTATTTCTAGCGGTGGTGATTGCATTAGTGTTGAAATAAAGCCCAAATGCGGATTTCTTCCAACCTCAAGGTTCATAGGTAAAGAAAACATGCTCAAAACAAGCGTAAGCCGTTTCAAAATGCATCAACTCTTAAAGTTGGAATATAACGAGATATCTGAAGAAAGCGAGTACGATCCTCTTGATCTCTTCTCTGGATCAAAAGAGAGTGTTTTGGAAGCTATAAAAGCTTTATATTCCACTCCTCAAAACAATTTCCGCGTATTCTTGAATGGTTCTCTCATATTAGGGGGTTCAGGTGAAAGCACCGGGAGAACCAGCCCCGAAATCGGGTATGCCTTTGAGGATGCTCTCAAAGGCTTCATTCAATCAGAAGACGGTCATAGGACAGAGTGCTTTCTACAACTAGTATCTGACGCTGTCTATGGCTCAGGAGTTCTTGATAGACTTCTTGAAATTCAGAAGCTAGACAAATTAGACATTGAAGGAGCGATTCATTCGTATTACGATTTAATCAACCAGCCTTGTCCTATATGTAAAGAAGGTAAGCCACTGGAGGCGGAATTGTCTCTACATGCTTTACCTTTAGATGAAAGCTTGAAGATTGTGAAGGAGTATTTGATAGCTGCAACTGCCAAAGACTGTAGTATTATGATCAGTTTTCAATCAAGGAATGCTTGGGATTCAGAACCCTCGGGTGATTACGTCTCTCTAAAACCGACCAATCAAACGTTTGATTACAAGGTACATTTCATTGATCTAAGCCTGAAACCACTTAAGAGAATGGAGTCATACTACAAATTGGATAAGAAGATAATTAGCTTTTACAATCGGAAGCAGAAAGCCGAAAACACGGCAGAACAAATCGGCAACTCAAAACCTTCCCACAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0006873 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009620 GO:0009791 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019725 GO:0019751 GO:0022622 GO:0030002 GO:0030320 GO:0030643 GO:0032501 GO:0032502 GO:0032942 GO:0032958 GO:0033517 GO:0035299 GO:0040007 GO:0042592 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046165 GO:0046173 GO:0046835 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051765 GO:0052746 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0090407 GO:0090696 GO:0098542 GO:0098771 GO:0099402 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

HMA Ins_P5_2-kin

Protein Analysis

451

Amino Acids

50.51

Weight (kDa)

6.01

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins_P5_2-kin	PF06090	15 - 425	6.4e-119	Inositol-pentakisphosphate 2-kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22100 AT1G58643 AT1G58643 AT1G58936 AT1G59312 AT1G59312 AT5G42810
fragaria_vesca	FvH4_2g39440
malus_domestica	MD08G1026900.v1.1 MD15G1023500.v1.1
prunus_persica	Prupe.1G375600_v2.0.a1 Prupe.1G549800_v2.0.a1
pyrus_communis	pycom08g02100 pycom15g01950
rosa_chinensis	RchiOBHm_Chr6g0301531
rosa_laevigata	RLG00000011246
rosa_multiflora	Rmu_ssc0000452.1_g000003
rosa_roxburghii	Rroxscaffold_7G00166680
rosa_rugosa	Rorug06G0305800
rosa_samantha	Rh6AG419500 Rh6BG425500 Rh6CG432600 Rh6DG418800
rosa_wichuraiana	Rw6G036270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	121
AccII	CGCG	1 cut(s)	723
AciI	CCGC	5 cut(s)	380, 474, 513, 721, 1022
AclI	AACGTT	1 cut(s)	1193
AclWI	GGATC	3 cut(s)	94, 632, 667
AcsI	RAATTY	1 cut(s)	918
AcuI	CTGAAG	1 cut(s)	642
AfaI	GTAC	3 cut(s)	318, 635, 1209
AfiI	CCNNNNNNNGG	5 cut(s)	289, 290, 512, 791, 792
AflII	CTTAAG	1 cut(s)	1238
AflIII	ACRYGT	2 cut(s)	301, 319
AhlI	ACTAGT	1 cut(s)	868
AluBI	AGCT	8 cut(s)	223, 683, 692, 928, 1059, 1088, 1284, 1353
AluI	AGCT	8 cut(s)	223, 683, 692, 928, 1059, 1088, 1284, 1353
Alw26I	GTCTC	2 cut(s)	1035, 1174
AlwI	GGATC	3 cut(s)	94, 632, 667
Ama87I	CYCGRG	1 cut(s)	1156
ApeKI	GCWGC	3 cut(s)	373, 398, 1088
ApoI	RAATTY	1 cut(s)	918
AspS9I	GGNCC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	772
AsuHPI	GGTGA	4 cut(s)	225, 491, 773, 1172
AvaI	CYCGRG	1 cut(s)	1156
AvaII	GGWCC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	843
BbvI	GCAGC	3 cut(s)	385, 410, 1075
BceAI	ACGGC	2 cut(s)	558, 1332
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BclI	TGATCA	3 cut(s)	276, 442, 1116
BcnI	CCSGG	1 cut(s)	772
BcoDI	GTCTC	2 cut(s)	1035, 1174
BcuI	ACTAGT	1 cut(s)	868
BfaI	CTAG	3 cut(s)	471, 869, 929
BfmI	CTRYAG	1 cut(s)	1105
BfrI	CTTAAG	1 cut(s)	1238
BisI	GCNGC	3 cut(s)	374, 399, 1089
BlsI	GCNGC	3 cut(s)	375, 400, 1090
Bme1390I	CCNGG	1 cut(s)	772
Bme18I	GGWCC	1 cut(s)	293
BmeT110I	CYCGRG	1 cut(s)	1156
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	2 cut(s)	61, 294
BmrFI	CCNGG	1 cut(s)	772
BmsI	GCATC	5 cut(s)	16, 38, 298, 595, 799
BpiI	GAAGAC	1 cut(s)	843
BpmI	CTGGAG	2 cut(s)	333, 1037
Bpu10I	CCTNAGC	1 cut(s)	892
BpuEI	CTTGAG	3 cut(s)	365, 444, 514
BpuMI	CCSGG	1 cut(s)	772
BsaAI	YACGTR	1 cut(s)	320
BsaJI	CCNNGG	2 cut(s)	333, 1155
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	5 cut(s)	289, 290, 512, 791, 792
Bse1I	ACTGG	1 cut(s)	1020
BseDI	CCNNGG	2 cut(s)	333, 1155
BseGI	GGATG	2 cut(s)	279, 814
BseLI	CCNNNNNNNGG	5 cut(s)	289, 290, 512, 791, 792
BseMII	CTCAG	1 cut(s)	906
BseNI	ACTGG	1 cut(s)	1020
BseRI	GAGGAG	2 cut(s)	32, 696
BseXI	GCAGC	3 cut(s)	385, 410, 1075
Bsh1236I	CGCG	1 cut(s)	723
BshNI	GGYRCC	1 cut(s)	59
BsiHKCI	CYCGRG	1 cut(s)	1156
BsiSI	CCGG	1 cut(s)	771
BslI	CCNNNNNNNGG	5 cut(s)	289, 290, 512, 791, 792
BsmAI	GTCTC	2 cut(s)	1035, 1174
BsmBI	CGTCTC	1 cut(s)	1174
BsmI	GAATGC	2 cut(s)	163, 1141
BsoBI	CYCGRG	1 cut(s)	1156
Bsp143I	GATC	8 cut(s)	86, 276, 442, 637, 646, 659, 1116, 1219
BspACI	CCGC	5 cut(s)	380, 474, 513, 721, 1022
BspCNI	CTCAG	1 cut(s)	905
BspFNI	CGCG	1 cut(s)	723
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	2 cut(s)	61, 294
BspPI	GGATC	3 cut(s)	94, 632, 667
BspT107I	GGYRCC	1 cut(s)	59
BspTI	CTTAAG	1 cut(s)	1238
BsrI	ACTGG	1 cut(s)	1020
BssECI	CCNNGG	2 cut(s)	333, 1155
BssMI	GATC	8 cut(s)	86, 276, 442, 637, 646, 659, 1116, 1219
BssNAI	GTATAC	1 cut(s)	122
BssT1I	CCWWGG	1 cut(s)	333
Bst1107I	GTATAC	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	842, 1106
Bst6I	CTCTTC	1 cut(s)	656
BstAFI	CTTAAG	1 cut(s)	1238
BstBAI	YACGTR	1 cut(s)	320
BstDEI	CTNAG	3 cut(s)	369, 892, 1223
BstF5I	GGATG	2 cut(s)	279, 814
BstFNI	CGCG	1 cut(s)	723
BstKTI	GATC	8 cut(s)	89, 279, 445, 640, 649, 662, 1119, 1222
BstMAI	GTCTC	2 cut(s)	1035, 1174
BstMBI	GATC	8 cut(s)	86, 276, 442, 637, 646, 659, 1116, 1219
BstMWI	GCNNNNNNNGC	3 cut(s)	379, 689, 1094
BstNSI	RCATGY	3 cut(s)	305, 556, 1040
BstSCI	CCNGG	1 cut(s)	770
BstSFI	CTRYAG	1 cut(s)	1105
BstUI	CGCG	1 cut(s)	723
BstV1I	GCAGC	3 cut(s)	385, 410, 1075
BstV2I	GAAGAC	1 cut(s)	843
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BstZ17I	GTATAC	1 cut(s)	122
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	279, 814
BtsIMutI	CAGTG	1 cut(s)	1013
CciI	TCATGA	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	293
CseI	GACGC	2 cut(s)	365, 887
Csp6I	GTAC	3 cut(s)	317, 634, 1208
CviAII	CATG	4 cut(s)	302, 419, 553, 1037
CviQI	GTAC	3 cut(s)	317, 634, 1208
DdeI	CTNAG	3 cut(s)	369, 892, 1223
DpnI	GATC	8 cut(s)	88, 278, 444, 639, 648, 661, 1118, 1221
DpnII	GATC	8 cut(s)	86, 276, 442, 637, 646, 659, 1116, 1219
Eam1104I	CTCTTC	1 cut(s)	656
EarI	CTCTTC	1 cut(s)	656
EciI	GGCGGA	1 cut(s)	1037
Eco130I	CCWWGG	1 cut(s)	333
Eco32I	GATATC	1 cut(s)	618
Eco47I	GGWCC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	642
Eco88I	CYCGRG	1 cut(s)	1156
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRV	GATATC	1 cut(s)	618
EcoT14I	CCWWGG	1 cut(s)	333
EcoT22I	ATGCAT	2 cut(s)	31, 588
ErhI	CCWWGG	1 cut(s)	333
Esp3I	CGTCTC	1 cut(s)	1174
FaeI	CATG	4 cut(s)	305, 422, 556, 1040
FalI	AAGNNNNNCTT	2 cut(s)	1123, 1155
FatI	CATG	4 cut(s)	301, 418, 552, 1036
FbaI	TGATCA	3 cut(s)	276, 442, 1116
FblI	GTMKAC	1 cut(s)	121
Fnu4HI	GCNGC	3 cut(s)	374, 399, 1089
FokI	GGATG	2 cut(s)	266, 821
Fsp4HI	GCNGC	3 cut(s)	374, 399, 1089
FspBI	CTAG	3 cut(s)	471, 869, 929
GluI	GCNGC	3 cut(s)	374, 399, 1089
GsuI	CTGGAG	2 cut(s)	333, 1037
HapII	CCGG	1 cut(s)	771
HgaI	GACGC	2 cut(s)	365, 887
Hin1II	CATG	4 cut(s)	305, 422, 556, 1040
HindIII	AAGCTT	2 cut(s)	690, 1057
HinfI	GANTC	6 cut(s)	115, 415, 422, 955, 1145, 1250
HpaII	CCGG	1 cut(s)	771
HphI	GGTGA	4 cut(s)	225, 491, 773, 1172
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	8 cut(s)	34, 135, 622, 835, 877, 924, 1150, 1296
Hpy8I	GTNNAC	1 cut(s)	122
HpyAV	CCTTC	6 cut(s)	47, 121, 941, 998, 1066, 1353
HpyCH4III	ACNGT	2 cut(s)	842, 1106
HpyCH4IV	ACGT	3 cut(s)	319, 1167, 1193
HpyCH4V	TGCA	5 cut(s)	29, 398, 486, 586, 1091
HpyF10VI	GCNNNNNNNGC	3 cut(s)	379, 689, 1094
HpyF3I	CTNAG	3 cut(s)	369, 892, 1223
HpySE526I	ACGT	3 cut(s)	319, 1167, 1193
Hsp92II	CATG	4 cut(s)	305, 422, 556, 1040
Ksp22I	TGATCA	3 cut(s)	276, 442, 1116
Kzo9I	GATC	8 cut(s)	86, 276, 442, 637, 646, 659, 1116, 1219
LmnI	GCTCC	1 cut(s)	950
Lsp1109I	GCAGC	3 cut(s)	385, 410, 1075
LweI	GCATC	5 cut(s)	16, 38, 298, 595, 799
MaeI	CTAG	3 cut(s)	471, 869, 929
MaeII	ACGT	3 cut(s)	319, 1167, 1193
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	8 cut(s)	88, 278, 444, 639, 648, 661, 1118, 1221
MboI	GATC	8 cut(s)	86, 276, 442, 637, 646, 659, 1116, 1219
MboII	GAAGA	7 cut(s)	81, 512, 635, 643, 848, 1075, 1285
MflI	RGATCY	1 cut(s)	86
MluCI	AATT	6 cut(s)	715, 918, 935, 1025, 1262, 1278
MlyI	GAGTC	2 cut(s)	424, 1259
MmeI	TCCRAC	2 cut(s)	548, 582
MnlI	CCTC	9 cut(s)	10, 41, 129, 538, 651, 717, 799, 1012, 1165
Mph1103I	ATGCAT	2 cut(s)	31, 588
MseI	TTAA	6 cut(s)	182, 267, 393, 596, 974, 1239
MslI	CAYNNNNRTG	1 cut(s)	306
MspCI	CTTAAG	1 cut(s)	1238
MspI	CCGG	1 cut(s)	771
MspR9I	CCNGG	1 cut(s)	772
Mva1269I	GAATGC	2 cut(s)	163, 1141
MvnI	CGCG	1 cut(s)	723
MwoI	GCNNNNNNNGC	3 cut(s)	379, 689, 1094
NciI	CCSGG	1 cut(s)	772
NdeII	GATC	8 cut(s)	86, 276, 442, 637, 646, 659, 1116, 1219
NlaIII	CATG	4 cut(s)	305, 422, 556, 1040
NlaIV	GGNNCC	2 cut(s)	61, 294
NsiI	ATGCAT	2 cut(s)	31, 588
NspI	RCATGY	3 cut(s)	305, 556, 1040
PagI	TCATGA	1 cut(s)	418
PciI	ACATGT	1 cut(s)	301
PctI	GAATGC	2 cut(s)	163, 1141
PfeI	GAWTC	4 cut(s)	115, 422, 955, 1145
PflFI	GACNNNGTC	1 cut(s)	881
PkrI	GCNGC	3 cut(s)	375, 400, 1090
PleI	GAGTC	2 cut(s)	423, 1258
PpsI	GAGTC	2 cut(s)	423, 1258
Ppu21I	YACGTR	1 cut(s)	320
PpuMI	RGGWCCY	1 cut(s)	293
PscI	ACATGT	1 cut(s)	301
Psp1406I	AACGTT	1 cut(s)	1193
Psp5II	RGGWCCY	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	61, 294
PspPI	GGNCC	1 cut(s)	293
PspPPI	RGGWCCY	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	86
PsyI	GACNNNGTC	1 cut(s)	881
RsaI	GTAC	3 cut(s)	318, 635, 1209
RsaNI	GTAC	3 cut(s)	317, 634, 1208
RseI	CAYNNNNRTG	1 cut(s)	306
SaqAI	TTAA	6 cut(s)	182, 267, 393, 596, 974, 1239
SatI	GCNGC	3 cut(s)	374, 399, 1089
Sau3AI	GATC	8 cut(s)	86, 276, 442, 637, 646, 659, 1116, 1219
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	2 cut(s)	424, 1259
ScrFI	CCNGG	1 cut(s)	772
SfaNI	GCATC	5 cut(s)	16, 38, 298, 595, 799
SfcI	CTRYAG	1 cut(s)	1105
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	306
SmlI	CTYRAG	4 cut(s)	344, 459, 529, 1238
SmoI	CTYRAG	4 cut(s)	344, 459, 529, 1238
SpeI	ACTAGT	1 cut(s)	868
Sse9I	AATT	6 cut(s)	715, 918, 935, 1025, 1262, 1278
SsiI	CCGC	5 cut(s)	380, 474, 513, 721, 1022
SspMI	CTAG	3 cut(s)	471, 869, 929
StyD4I	CCNGG	1 cut(s)	770
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	2 cut(s)	842, 1106
TaiI	ACGT	3 cut(s)	322, 1170, 1196
TasI	AATT	6 cut(s)	715, 918, 935, 1025, 1262, 1278
TfiI	GAWTC	4 cut(s)	115, 422, 955, 1145
Tru1I	TTAA	6 cut(s)	182, 267, 393, 596, 974, 1239
Tru9I	TTAA	6 cut(s)	182, 267, 393, 596, 974, 1239
TscAI	CASTG	1 cut(s)	1020
TseI	GCWGC	3 cut(s)	373, 398, 1088
TspDTI	ATGAA	6 cut(s)	219, 526, 814, 947, 1068, 1204
TspRI	CASTG	1 cut(s)	1020
Tth111I	GACNNNGTC	1 cut(s)	881
Vha464I	CTTAAG	1 cut(s)	1238
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	1 cut(s)	918
XceI	RCATGY	3 cut(s)	305, 556, 1040
XmiI	GTMKAC	1 cut(s)	121
XspI	CTAG	3 cut(s)	471, 869, 929
Zsp2I	ATGCAT	2 cut(s)	31, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.