Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000452.1

Orthogroup ID

OG0007720

Physical Location & Seq

Genomic Coordinates Forward (+)

13382 .. 16060

Gene Structure 2679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000452.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

atggaggtcgttttggagaagaaagacgctgctgaatgggtgtacagaggcgaaggcgctgctaatctcgttcttgcttacatcggatcctccccagcttttatcgggaaagtaatgcgcatacagaaggccgcgaaaaggaatgtgtccgaacgttctagcagtcccacagcactaagcatgcatgaacgcctggtgtggaaagacttggaggacgtagtaacttcctctaacagagagcttgccagccaactatatgtgaagcatgtcatgacccctttattgggtccaaagtttgttgattctgggatgcgtgtccatgcttctcgggaattcttggagacagtggagcagaatgtaaattgtcagcgcccagcttctcgagttgatgctgctaaagttgatactgaatgtgattatgtgcttctcatgtctgatcactctctttttcctagtggtattcaagaaggcgaaacctgtatatctgtagagataaagccaaaatgtggatttctcccaacttcaaagtatatagatgaaggaaatgccatcaaacggaggattactcgttttaggatgcaccaggccctaaagttgcatgatggagaggtatcggaatatagtgaatatgatccacttgatctcttctctggatcaaaggacagaatacgtaaagctatcaaggatctcttcgctaccccacagaataatttccgggtattcttgaatggttctctaatatttgggggattgggtggtggtgcagcaagtaccaatttggtgattagggataaagttgaaacagcacttaagggtgtcattcagggaggtgatggcttccgcacagtgaactttctacagcttgttgctgagacagttcatagatctggagtgatggatcagcttctggagatccagaaacttgataatcttgacatagatggagctatccatgcatattatgacattatttctgagccttgcatggtatgtacaggattgggtaaaggcaaagcgtcaaacagatattcttcattgcattccctctctctggatgaaagcttaaagattgtgaaggattttttgatagctgccactgcaaaggactgcagtttgatgattagtttcagaccaacgaaagatgggagtacaggatctccgtataataatgtgtatctggaatcaaccaatcaattttatgattacaaggtgcatttcattgacctggatctgaaatctttgaagaaattggaagaatattatgagttggacaaaaaaatcgtacgctgctacaatgaaatggtggaaactaaggaaagactaaataaaactacaagcaccgaggcttgtcaaactgcggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0006873 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009620 GO:0009791 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019725 GO:0019751 GO:0022622 GO:0030002 GO:0030320 GO:0030643 GO:0032501 GO:0032502 GO:0032942 GO:0032958 GO:0033517 GO:0035299 GO:0040007 GO:0042592 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046165 GO:0046173 GO:0046835 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051765 GO:0052746 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0090407 GO:0090696 GO:0098542 GO:0098771 GO:0099402 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

HMA Ins_P5_2-kin

Protein Analysis

454

Amino Acids

50.77

Weight (kDa)

6.25

Isoelectric Point (pI)

30.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22100 AT1G58643 AT1G58643 AT1G58936 AT1G59312 AT1G59312 AT5G42810
fragaria_vesca	FvH4_2g39440
malus_domestica	MD08G1026900.v1.1 MD15G1023500.v1.1
prunus_persica	Prupe.1G375600_v2.0.a1 Prupe.1G549800_v2.0.a1
pyrus_communis	pycom08g02100 pycom15g01950
rosa_chinensis	RchiOBHm_Chr6g0301531
rosa_laevigata	RLG00000011246
rosa_multiflora	Rmu_ssc0000452.1_g000003
rosa_roxburghii	Rroxscaffold_7G00166680
rosa_rugosa	Rorug06G0305800
rosa_samantha	Rh6AG419500 Rh6BG425500 Rh6CG432600 Rh6DG418800
rosa_wichuraiana	Rw6G036270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	119
AccB7I	CCANNNNNTGG	1 cut(s)	506
AccII	CGCG	1 cut(s)	134
AciI	CCGC	3 cut(s)	132, 841, 1358
AclI	AACGTT	1 cut(s)	154
AclWI	GGATC	9 cut(s)	81, 94, 626, 661, 693, 906, 907, 1162, 1236
AcsI	RAATTY	1 cut(s)	332
AfaI	GTAC	5 cut(s)	44, 772, 994, 1150, 1284
AfiI	CCNNNNNNNGG	6 cut(s)	138, 283, 284, 506, 555, 1051
AflII	CTTAAG	1 cut(s)	809
AgsI	TTSAA	5 cut(s)	464, 525, 727, 800, 1243
AjnI	CCWGG	3 cut(s)	192, 582, 1224
AluBI	AGCT	9 cut(s)	98, 241, 377, 677, 862, 904, 947, 1062, 1091
AluI	AGCT	9 cut(s)	98, 241, 377, 677, 862, 904, 947, 1062, 1091
Alw26I	GTCTC	2 cut(s)	335, 866
AlwI	GGATC	9 cut(s)	81, 94, 626, 661, 693, 906, 907, 1162, 1236
AlwNI	CAGNNNCTG	1 cut(s)	907
Ama87I	CYCGRG	2 cut(s)	327, 381
AoxI	GGCC	2 cut(s)	129, 585
ApeKI	GCWGC	6 cut(s)	29, 59, 392, 764, 1091, 1287
ApoI	RAATTY	1 cut(s)	332
Asp700I	GAANNNNTTC	1 cut(s)	710
AspLEI	GCGC	3 cut(s)	59, 120, 372
AspS9I	GGNCC	2 cut(s)	287, 586
AsuC2I	CCSGG	1 cut(s)	716
AsuHPI	GGTGA	2 cut(s)	793, 842
AvaI	CYCGRG	2 cut(s)	327, 381
AvaII	GGWCC	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	86
BbvI	GCAGC	6 cut(s)	16, 46, 379, 776, 1078, 1274
BccI	CCATC	6 cut(s)	557, 596, 827, 889, 935, 1136
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	3 cut(s)	194, 584, 1226
BclI	TGATCA	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	716
BcoDI	GTCTC	2 cut(s)	335, 866
BfaI	CTAG	2 cut(s)	159, 453
BfmI	CTRYAG	3 cut(s)	486, 857, 1108
BfoI	RGCGCY	2 cut(s)	60, 373
BfrI	CTTAAG	1 cut(s)	809
BglII	AGATCT	1 cut(s)	884
BisI	GCNGC	7 cut(s)	30, 60, 132, 393, 765, 1092, 1288
BlsI	GCNGC	7 cut(s)	31, 61, 133, 394, 766, 1093, 1289
Bme1390I	CCNGG	4 cut(s)	194, 584, 716, 1226
Bme18I	GGWCC	1 cut(s)	287
BmeT110I	CYCGRG	2 cut(s)	327, 381
BmgT120I	GGNCC	2 cut(s)	287, 586
BmiI	GGNNCC	2 cut(s)	88, 288
BmrFI	CCNGG	4 cut(s)	194, 584, 716, 1226
BmsI	GCATC	3 cut(s)	300, 379, 567
BplI	GAGNNNNNCTC	2 cut(s)	550, 582
BpmI	CTGGAG	2 cut(s)	909, 929
BpuMI	CCSGG	1 cut(s)	716
BsaAI	YACGTR	1 cut(s)	671
BsaJI	CCNNGG	1 cut(s)	1341
BsaXI	ACNNNNNCTCC	2 cut(s)	1141, 1171
Bsc4I	CCNNNNNNNGG	6 cut(s)	138, 283, 284, 506, 555, 1051
Bse3DI	GCAATG	1 cut(s)	1034
BseBI	CCWGG	3 cut(s)	194, 584, 1226
BseDI	CCNNGG	1 cut(s)	1341
BseGI	GGATG	3 cut(s)	315, 582, 1060
BseLI	CCNNNNNNNGG	6 cut(s)	138, 283, 284, 506, 555, 1051
BseMI	GCAATG	1 cut(s)	1034
BseMII	CTCAG	2 cut(s)	861, 966
BseXI	GCAGC	6 cut(s)	16, 46, 379, 776, 1078, 1274
BseYI	CCCAGC	2 cut(s)	94, 373
BsgI	GTGCAG	1 cut(s)	783
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	2 cut(s)	131, 587
BsiHKCI	CYCGRG	2 cut(s)	327, 381
BsiSI	CCGG	1 cut(s)	715
BsiWI	CGTACG	1 cut(s)	1282
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	6 cut(s)	138, 283, 284, 506, 555, 1051
BsmAI	GTCTC	2 cut(s)	335, 866
BsmFI	GGGAC	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	1039
BsnI	GGCC	2 cut(s)	131, 587
BsoBI	CYCGRG	2 cut(s)	327, 381
Bsp1407I	TGTACA	2 cut(s)	42, 992
BspACI	CCGC	3 cut(s)	132, 841, 1358
BspANI	GGCC	2 cut(s)	131, 587
BspCNI	CTCAG	2 cut(s)	862, 967
BspFNI	CGCG	1 cut(s)	134
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	2 cut(s)	88, 288
BspMAI	CTGCAG	1 cut(s)	1112
BspPI	GGATC	9 cut(s)	81, 94, 626, 661, 693, 906, 907, 1162, 1236
BspTI	CTTAAG	1 cut(s)	809
BsrDI	GCAATG	1 cut(s)	1034
BsrGI	TGTACA	2 cut(s)	42, 992
BssECI	CCNNGG	1 cut(s)	1341
Bst2UI	CCWGG	3 cut(s)	194, 584, 1226
Bst4CI	ACNGT	3 cut(s)	346, 847, 877
Bst6I	CTCTTC	2 cut(s)	650, 695
BstAFI	CTTAAG	1 cut(s)	809
BstAUI	TGTACA	2 cut(s)	42, 992
BstBAI	YACGTR	1 cut(s)	671
BstC8I	GCNNGC	3 cut(s)	182, 243, 247
BstDEI	CTNAG	4 cut(s)	176, 870, 975, 1311
BstF5I	GGATG	3 cut(s)	315, 582, 1060
BstFNI	CGCG	1 cut(s)	134
BstH2I	RGCGCY	2 cut(s)	60, 373
BstHHI	GCGC	3 cut(s)	59, 120, 372
BstMAI	GTCTC	2 cut(s)	335, 866
BstMWI	GCNNNNNNNGC	2 cut(s)	953, 1097
BstNI	CCWGG	3 cut(s)	194, 584, 1226
BstNSI	RCATGY	2 cut(s)	184, 269
BstSCI	CCNGG	4 cut(s)	192, 582, 714, 1224
BstSFI	CTRYAG	3 cut(s)	486, 857, 1108
BstSNI	TACGTA	1 cut(s)	671
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	6 cut(s)	16, 46, 379, 776, 1078, 1274
BstX2I	RGATCY	6 cut(s)	86, 685, 884, 912, 1154, 1228
BstYI	RGATCY	6 cut(s)	86, 685, 884, 912, 1154, 1228
BsuRI	GGCC	2 cut(s)	131, 587
BtsCI	GGATG	3 cut(s)	315, 582, 1060
BtsI	GCAGTG	1 cut(s)	1095
BtsIMutI	CAGTG	3 cut(s)	351, 852, 1095
Cac8I	GCNNGC	3 cut(s)	182, 243, 247
CaiI	CAGNNNCTG	1 cut(s)	907
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	3 cut(s)	59, 120, 372
Cfr13I	GGNCC	2 cut(s)	287, 586
CseI	GACGC	2 cut(s)	35, 1005
Csp6I	GTAC	5 cut(s)	43, 771, 993, 1149, 1283
CviAII	CATG	9 cut(s)	181, 185, 266, 271, 320, 430, 599, 953, 985
CviQI	GTAC	5 cut(s)	43, 771, 993, 1149, 1283
DdeI	CTNAG	4 cut(s)	176, 870, 975, 1311
Eam1104I	CTCTTC	2 cut(s)	650, 695
EarI	CTCTTC	2 cut(s)	650, 695
Eco105I	TACGTA	1 cut(s)	671
Eco47I	GGWCC	1 cut(s)	287
Eco88I	CYCGRG	2 cut(s)	327, 381
EcoO109I	RGGNCCY	1 cut(s)	586
EcoRI	GAATTC	1 cut(s)	332
EcoRII	CCWGG	3 cut(s)	192, 582, 1224
EcoT22I	ATGCAT	2 cut(s)	186, 958
FaeI	CATG	9 cut(s)	184, 188, 269, 274, 323, 433, 602, 956, 988
FalI	AAGNNNNNCTT	2 cut(s)	674, 706
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	9 cut(s)	180, 184, 265, 270, 319, 429, 598, 952, 984
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	7 cut(s)	30, 60, 132, 393, 765, 1092, 1288
FokI	GGATG	3 cut(s)	322, 589, 1067
Fsp4HI	GCNGC	7 cut(s)	30, 60, 132, 393, 765, 1092, 1288
FspAI	RTGCGCAY	1 cut(s)	119
FspBI	CTAG	2 cut(s)	159, 453
FspI	TGCGCA	1 cut(s)	119
GlaI	GCGC	3 cut(s)	58, 119, 371
GluI	GCNGC	7 cut(s)	30, 60, 132, 393, 765, 1092, 1288
GsaI	CCCAGC	2 cut(s)	98, 377
GsuI	CTGGAG	2 cut(s)	909, 929
HaeII	RGCGCY	2 cut(s)	60, 373
HaeIII	GGCC	2 cut(s)	131, 587
HapII	CCGG	1 cut(s)	715
HgaI	GACGC	2 cut(s)	35, 1005
HhaI	GCGC	3 cut(s)	59, 120, 372
Hin1II	CATG	9 cut(s)	184, 188, 269, 274, 323, 433, 602, 956, 988
Hin6I	GCGC	3 cut(s)	57, 118, 370
HinP1I	GCGC	3 cut(s)	57, 118, 370
HindIII	AAGCTT	1 cut(s)	1060
HinfI	GANTC	2 cut(s)	302, 1181
HpaII	CCGG	1 cut(s)	715
HphI	GGTGA	2 cut(s)	793, 842
Hpy166II	GTNNAC	2 cut(s)	43, 850
Hpy188I	TCNGA	7 cut(s)	86, 151, 436, 616, 976, 1130, 1233
Hpy8I	GTNNAC	2 cut(s)	43, 850
HpyAV	CCTTC	5 cut(s)	47, 121, 461, 533, 1069
HpyCH4III	ACNGT	3 cut(s)	346, 847, 877
HpyCH4IV	ACGT	3 cut(s)	154, 216, 670
HpyF10VI	GCNNNNNNNGC	2 cut(s)	953, 1097
HpyF3I	CTNAG	4 cut(s)	176, 870, 975, 1311
HpySE526I	ACGT	3 cut(s)	154, 216, 670
Hsp92II	CATG	9 cut(s)	184, 188, 269, 274, 323, 433, 602, 956, 988
HspAI	GCGC	3 cut(s)	57, 118, 370
Ksp22I	TGATCA	1 cut(s)	436
LmnI	GCTCC	2 cut(s)	349, 944
Lsp1109I	GCAGC	6 cut(s)	16, 46, 379, 776, 1078, 1274
LweI	GCATC	3 cut(s)	300, 379, 567
MaeI	CTAG	2 cut(s)	159, 453
MaeII	ACGT	3 cut(s)	154, 216, 670
MaeIII	GTNAC	1 cut(s)	220
MboII	GAAGA	6 cut(s)	31, 637, 682, 1023, 1255, 1265
MflI	RGATCY	6 cut(s)	86, 685, 884, 912, 1154, 1228
MluCI	AATT	6 cut(s)	332, 361, 709, 775, 1193, 1247
MmeI	TCCRAC	1 cut(s)	1248
MnlI	CCTC	9 cut(s)	41, 100, 205, 238, 552, 601, 821, 1055, 1336
Mph1103I	ATGCAT	2 cut(s)	186, 958
MroXI	GAANNNNTTC	1 cut(s)	710
MseI	TTAA	2 cut(s)	810, 1064
MspCI	CTTAAG	1 cut(s)	809
MspI	CCGG	1 cut(s)	715
MspR9I	CCNGG	4 cut(s)	194, 584, 716, 1226
Mva1269I	GAATGC	1 cut(s)	1039
MvaI	CCWGG	3 cut(s)	194, 584, 1226
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	953, 1097
NciI	CCSGG	1 cut(s)	716
NlaIII	CATG	9 cut(s)	184, 188, 269, 274, 323, 433, 602, 956, 988
NlaIV	GGNNCC	2 cut(s)	88, 288
NsbI	TGCGCA	1 cut(s)	119
NsiI	ATGCAT	2 cut(s)	186, 958
NspI	RCATGY	2 cut(s)	184, 269
PaeI	GCATGC	1 cut(s)	184
PaeR7I	CTCGAG	1 cut(s)	381
PagI	TCATGA	1 cut(s)	270
PctI	GAATGC	1 cut(s)	1039
PdmI	GAANNNNTTC	1 cut(s)	710
PfeI	GAWTC	2 cut(s)	302, 1181
Pfl23II	CGTACG	1 cut(s)	1282
PflMI	CCANNNNNTGG	1 cut(s)	506
PkrI	GCNGC	7 cut(s)	31, 61, 133, 394, 766, 1093, 1289
Ppu21I	YACGTR	1 cut(s)	671
Psp1406I	AACGTT	1 cut(s)	154
Psp6I	CCWGG	3 cut(s)	192, 582, 1224
PspFI	CCCAGC	2 cut(s)	94, 373
PspGI	CCWGG	3 cut(s)	192, 582, 1224
PspLI	CGTACG	1 cut(s)	1282
PspN4I	GGNNCC	2 cut(s)	88, 288
PspPI	GGNCC	2 cut(s)	287, 586
PstI	CTGCAG	1 cut(s)	1112
PstNI	CAGNNNCTG	1 cut(s)	907
PsuI	RGATCY	6 cut(s)	86, 685, 884, 912, 1154, 1228
RsaI	GTAC	5 cut(s)	44, 772, 994, 1150, 1284
RsaNI	GTAC	5 cut(s)	43, 771, 993, 1149, 1283
SaqAI	TTAA	2 cut(s)	810, 1064
SatI	GCNGC	7 cut(s)	30, 60, 132, 393, 765, 1092, 1288
Sau96I	GGNCC	2 cut(s)	287, 586
ScrFI	CCNGG	4 cut(s)	194, 584, 716, 1226
SfaNI	GCATC	3 cut(s)	300, 379, 567
SfcI	CTRYAG	3 cut(s)	486, 857, 1108
Sfr274I	CTCGAG	1 cut(s)	381
SinI	GGWCC	1 cut(s)	287
SlaI	CTCGAG	1 cut(s)	381
SmlI	CTYRAG	2 cut(s)	381, 809
SmoI	CTYRAG	2 cut(s)	381, 809
SnaBI	TACGTA	1 cut(s)	671
SphI	GCATGC	1 cut(s)	184
Sse9I	AATT	6 cut(s)	332, 361, 709, 775, 1193, 1247
SsiI	CCGC	3 cut(s)	132, 841, 1358
SspI	AATATT	2 cut(s)	741, 1259
SspMI	CTAG	2 cut(s)	159, 453
StyD4I	CCNGG	4 cut(s)	192, 582, 714, 1224
TaaI	ACNGT	3 cut(s)	346, 847, 877
TaiI	ACGT	3 cut(s)	157, 219, 673
TaqI	TCGA	1 cut(s)	382
TasI	AATT	6 cut(s)	332, 361, 709, 775, 1193, 1247
TatI	WGTACW	3 cut(s)	42, 992, 1148
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	2 cut(s)	302, 1181
Tru1I	TTAA	2 cut(s)	810, 1064
Tru9I	TTAA	2 cut(s)	810, 1064
TscAI	CASTG	3 cut(s)	351, 852, 1102
TseI	GCWGC	6 cut(s)	29, 59, 392, 764, 1091, 1287
TspDTI	ATGAA	7 cut(s)	201, 552, 869, 1023, 1071, 1207, 1311
TspGWI	ACGGA	2 cut(s)	571, 1149
TspRI	CASTG	3 cut(s)	351, 852, 1102
Van91I	CCANNNNNTGG	1 cut(s)	506
Vha464I	CTTAAG	1 cut(s)	809
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	2 cut(s)	184, 269
XhoI	CTCGAG	1 cut(s)	381
XmnI	GAANNNNTTC	1 cut(s)	710
XspI	CTAG	2 cut(s)	159, 453
Zsp2I	ATGCAT	2 cut(s)	186, 958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.