Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007720

Physical Location & Seq

Genomic Coordinates Reverse (-)

45714399 .. 45714659

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0305800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGAAAGTCTGGTGGCCTCACCAAAGCCAGTCGTTCAGAGTCCTAAAGCTCTGGCGACGCCGCAACAATTCGGGGATCAGAGTCTCGAAGGGACACATGTCGATGTACGTCGGCAATGAGATGGTACGGTTCGTCGTCTCCACTGAGCTCCTCAACCACCTAGTGTTTGTCGAGCTCCTCAACAAGTCGGCGCAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0006873 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009620 GO:0009791 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019725 GO:0019751 GO:0022622 GO:0030002 GO:0030320 GO:0030643 GO:0032501 GO:0032502 GO:0032942 GO:0032958 GO:0033517 GO:0035299 GO:0040007 GO:0042592 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046165 GO:0046173 GO:0046835 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051765 GO:0052746 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0090407 GO:0090696 GO:0098542 GO:0098771 GO:0099402 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

HMA Ins_P5_2-kin

Protein Analysis

66

Amino Acids

7.89

Weight (kDa)

10.96

Isoelectric Point (pI)

59.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	22 - 66	4e-12	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22100 AT1G58643 AT1G58643 AT1G58936 AT1G59312 AT1G59312 AT5G42810
fragaria_vesca	FvH4_2g39440
malus_domestica	MD08G1026900.v1.1 MD15G1023500.v1.1
prunus_persica	Prupe.1G375600_v2.0.a1 Prupe.1G549800_v2.0.a1
pyrus_communis	pycom08g02100 pycom15g01950
rosa_chinensis	RchiOBHm_Chr6g0301531
rosa_laevigata	RLG00000011246
rosa_multiflora	Rmu_ssc0000452.1_g000003
rosa_roxburghii	Rroxscaffold_7G00166680
rosa_rugosa	Rorug06G0305800
rosa_samantha	Rh6AG419500 Rh6BG425500 Rh6CG432600 Rh6DG418800
rosa_wichuraiana	Rw6G036270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	83
AcyI	GRCGYC	1 cut(s)	58
AdeI	CACNNNGTG	1 cut(s)	163
AfaI	GTAC	2 cut(s)	107, 126
AflIII	ACRYGT	1 cut(s)	96
AluBI	AGCT	3 cut(s)	49, 148, 175
AluI	AGCT	3 cut(s)	49, 148, 175
Alw21I	GWGCWC	2 cut(s)	150, 177
Alw26I	GTCTC	2 cut(s)	88, 142
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	11
BanII	GRGCYC	2 cut(s)	150, 177
Bbv12I	GWGCWC	2 cut(s)	150, 177
BccI	CCATC	1 cut(s)	115
BcoDI	GTCTC	2 cut(s)	88, 142
BfaI	CTAG	1 cut(s)	161
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
BoxI	GACNNNNGTC	1 cut(s)	97
BsaHI	GRCGYC	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	2 cut(s)	140, 167
BshFI	GGCC	1 cut(s)	16
BsiHKAI	GWGCWC	2 cut(s)	150, 177
BslFI	GGGAC	1 cut(s)	105
BsmAI	GTCTC	2 cut(s)	88, 142
BsmBI	CGTCTC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	16
Bsp1286I	GDGCHC	2 cut(s)	150, 177
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	136
BspPI	GGATC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	75
BssNI	GRCGYC	1 cut(s)	58
Bst4CI	ACNGT	1 cut(s)	129
BstACI	GRCGYC	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	2 cut(s)	88, 142
BstMBI	GATC	1 cut(s)	75
BstNSI	RCATGY	1 cut(s)	100
BstPAI	GACNNNNGTC	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	141
CfoI	GCGC	1 cut(s)	193
CseI	GACGC	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	106, 125
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	5 cut(s)	16, 27, 49, 148, 175
CviKI_1	RGCY	5 cut(s)	16, 27, 49, 148, 175
CviQI	GTAC	2 cut(s)	106, 125
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
DraIII	CACNNNGTG	1 cut(s)	163
Ecl136II	GAGCTC	2 cut(s)	148, 175
Eco24I	GRGCYC	2 cut(s)	150, 177
Eco53kI	GAGCTC	2 cut(s)	148, 175
EcoICRI	GAGCTC	2 cut(s)	148, 175
EcoT38I	GRGCYC	2 cut(s)	150, 177
Esp3I	CGTCTC	1 cut(s)	142
FaeI	CATG	1 cut(s)	100
FaiI	YATR	1 cut(s)	98
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	61
FriOI	GRGCYC	2 cut(s)	150, 177
Fsp4HI	GCNGC	1 cut(s)	61
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	16
HgaI	GACGC	1 cut(s)	66
HhaI	GCGC	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	58
Hin1II	CATG	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HinfI	GANTC	2 cut(s)	39, 81
HphI	GGTGA	1 cut(s)	11
Hpy188I	TCNGA	2 cut(s)	38, 80
Hpy188III	TCNNGA	1 cut(s)	85
Hpy99I	CGWCG	3 cut(s)	60, 113, 137
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4IV	ACGT	1 cut(s)	108
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	1 cut(s)	58
Hsp92II	CATG	1 cut(s)	100
HspAI	GCGC	1 cut(s)	191
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	2 cut(s)	153, 180
LpnPI	CCDG	3 cut(s)	37, 41, 179
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	108
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MhlI	GDGCHC	2 cut(s)	150, 177
MluCI	AATT	1 cut(s)	67
MlyI	GAGTC	2 cut(s)	48, 90
MnlI	CCTC	3 cut(s)	27, 161, 188
MslI	CAYNNNNRTG	1 cut(s)	101
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	1 cut(s)	100
NspI	RCATGY	1 cut(s)	100
PciI	ACATGT	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	62
PleI	GAGTC	2 cut(s)	47, 89
PpsI	GAGTC	2 cut(s)	47, 89
PscI	ACATGT	1 cut(s)	96
PshAI	GACNNNNGTC	1 cut(s)	97
Psp124BI	GAGCTC	2 cut(s)	150, 177
RsaI	GTAC	2 cut(s)	107, 126
RsaNI	GTAC	2 cut(s)	106, 125
RseI	CAYNNNNRTG	1 cut(s)	101
SacI	GAGCTC	2 cut(s)	150, 177
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	1 cut(s)	75
SchI	GAGTC	2 cut(s)	48, 90
SduI	GDGCHC	2 cut(s)	150, 177
SetI	ASST	5 cut(s)	51, 111, 150, 162, 177
SgeI	CNNG	9 cut(s)	22, 40, 64, 84, 97, 109, 173, 184, 196
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	1 cut(s)	67
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	161
SstI	GAGCTC	2 cut(s)	150, 177
TaaI	ACNGT	1 cut(s)	129
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	3 cut(s)	86, 101, 171
TasI	AATT	1 cut(s)	67
TauI	GCSGC	1 cut(s)	63
TscAI	CASTG	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	148
XceI	RCATGY	1 cut(s)	100
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.