AT5G44005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0020214
Physical Location & Seq
Reverse (-)
17704843 .. 17705793
951 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44005.1

Sequence Viewer

Length: 285 bp
ATGAACAAACAAAGTTTGAAGAGACTTCAGTTCCGGAGATGGGGAAAGCGAATCGGAAGCTCGACGACGGCTTCAGCAACGCTAGGAAACACCGAGGAAAGAACGATTGTGGCGTTTGCGTTCTCATGTTGTGGAAAACCACGTGTTCTCGTGAAGCAGTTTGTTTGGAGGCTTAAATCGCGCTTAAGGTGGTCTCGGAAGAGTGATCATAATAATATTCAGTGTAGTTATGATCTCCGGAGCTATCATCTGAATTTCGACGACGGTTGGTCTCGCCGACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

11.2

Weight (kDa)

11.32

Isoelectric Point (pI)

89.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44005
prunus_persica Prupe.8G216600_v2.0.a1
pyrus_communis pycom05g17420
rosa_chinensis RchiOBHm_Chr6g0286891
rosa_rugosa Rorug06G0184600
rosa_samantha Rh6BG301100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 181
AccIII TCCGGA 2 cut(s) 33, 237
AcsI RAATTY 1 cut(s) 253
AcuI CTGAAG 2 cut(s) 11, 57
AcvI CACGTG 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 40
AflII CTTAAG 1 cut(s) 184
AflIII ACRYGT 1 cut(s) 142
AgsI TTSAA 1 cut(s) 19
AhdI GACNNNNNGTC 1 cut(s) 268
AluBI AGCT 2 cut(s) 60, 243
AluI AGCT 2 cut(s) 60, 243
Alw26I GTCTC 3 cut(s) 16, 198, 276
Aor13HI TCCGGA 2 cut(s) 33, 237
ApoI RAATTY 1 cut(s) 253
AspLEI GCGC 1 cut(s) 183
BauI CACGAG 1 cut(s) 149
BbrPI CACGTG 1 cut(s) 143
BccI CCATC 1 cut(s) 33
BceAI ACGGC 1 cut(s) 84
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 3 cut(s) 16, 198, 276
BfaI CTAG 1 cut(s) 83
BfrI CTTAAG 1 cut(s) 184
BmeRI GACNNNNNGTC 1 cut(s) 268
BsaAI YACGTR 1 cut(s) 143
BsaI GGTCTC 2 cut(s) 198, 276
BsaJI CCNNGG 1 cut(s) 93
BsaWI WCCGGW 2 cut(s) 33, 237
Bsc4I CCNNNNNNNGG 1 cut(s) 40
BseAI TCCGGA 2 cut(s) 33, 237
BseDI CCNNGG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 181
BsiSI CCGG 2 cut(s) 34, 238
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 3 cut(s) 16, 198, 276
Bso31I GGTCTC 2 cut(s) 198, 276
Bsp13I TCCGGA 2 cut(s) 33, 237
Bsp143I GATC 2 cut(s) 205, 232
BspEI TCCGGA 2 cut(s) 33, 237
BspFNI CGCG 1 cut(s) 181
BspTI CTTAAG 1 cut(s) 184
BspTNI GGTCTC 2 cut(s) 198, 276
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 205, 232
BssSI CACGAG 1 cut(s) 149
Bst2BI CACGAG 1 cut(s) 149
Bst4CI ACNGT 2 cut(s) 266, 282
Bst6I CTCTTC 2 cut(s) 14, 194
BstAFI CTTAAG 1 cut(s) 184
BstBAI YACGTR 1 cut(s) 143
BstFNI CGCG 1 cut(s) 181
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 2 cut(s) 208, 235
BstMAI GTCTC 3 cut(s) 16, 198, 276
BstMBI GATC 2 cut(s) 205, 232
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstUI CGCG 1 cut(s) 181
BtsIMutI CAGTG 1 cut(s) 227
CfoI GCGC 1 cut(s) 183
CviAII CATG 1 cut(s) 126
CviJI RGCY 4 cut(s) 60, 71, 172, 243
CviKI_1 RGCY 4 cut(s) 60, 71, 172, 243
DpnI GATC 2 cut(s) 207, 234
DpnII GATC 2 cut(s) 205, 232
DriI GACNNNNNGTC 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 14, 194
Eam1105I GACNNNNNGTC 1 cut(s) 268
EarI CTCTTC 2 cut(s) 14, 194
Eco31I GGTCTC 2 cut(s) 198, 276
Eco57I CTGAAG 2 cut(s) 11, 57
Eco72I CACGTG 1 cut(s) 143
FaeI CATG 1 cut(s) 129
FaiI YATR 3 cut(s) 127, 210, 231
FatI CATG 1 cut(s) 125
FbaI TGATCA 1 cut(s) 205
FspBI CTAG 1 cut(s) 83
GlaI GCGC 1 cut(s) 182
HapII CCGG 2 cut(s) 34, 238
HhaI GCGC 1 cut(s) 183
Hin1II CATG 1 cut(s) 129
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HinfI GANTC 1 cut(s) 51
HpaII CCGG 2 cut(s) 34, 238
Hpy188I TCNGA 3 cut(s) 56, 198, 252
Hpy188III TCNNGA 3 cut(s) 34, 151, 238
Hpy99I CGWCG 5 cut(s) 67, 70, 263, 266, 282
HpyCH4III ACNGT 2 cut(s) 266, 282
HpyCH4IV ACGT 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 1 cut(s) 129
HspAI GCGC 1 cut(s) 181
Kpn2I TCCGGA 2 cut(s) 33, 237
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 2 cut(s) 205, 232
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 2 cut(s) 47, 251
MaeI CTAG 1 cut(s) 83
MaeII ACGT 1 cut(s) 142
MalI GATC 2 cut(s) 207, 234
MboI GATC 2 cut(s) 205, 232
MboII GAAGA 2 cut(s) 31, 211
MluCI AATT 1 cut(s) 253
MnlI CCTC 2 cut(s) 88, 162
MroI TCCGGA 2 cut(s) 33, 237
MseI TTAA 2 cut(s) 174, 185
MspCI CTTAAG 1 cut(s) 184
MspI CCGG 2 cut(s) 34, 238
MvnI CGCG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 178
NdeII GATC 2 cut(s) 205, 232
NlaIII CATG 1 cut(s) 129
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PfeI GAWTC 1 cut(s) 51
PmaCI CACGTG 1 cut(s) 143
PmlI CACGTG 1 cut(s) 143
Ppu21I YACGTR 1 cut(s) 143
PspCI CACGTG 1 cut(s) 143
SaqAI TTAA 2 cut(s) 174, 185
Sau3AI GATC 2 cut(s) 205, 232
SetI ASST 4 cut(s) 62, 145, 191, 245
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 1 cut(s) 253
SspI AATATT 1 cut(s) 217
SspMI CTAG 1 cut(s) 83
TaaI ACNGT 2 cut(s) 266, 282
TaiI ACGT 1 cut(s) 145
TaqI TCGA 2 cut(s) 62, 258
TasI AATT 1 cut(s) 253
TfiI GAWTC 1 cut(s) 51
Tru1I TTAA 2 cut(s) 174, 185
Tru9I TTAA 2 cut(s) 174, 185
TscAI CASTG 1 cut(s) 227
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 227
Vha464I CTTAAG 1 cut(s) 184
XapI RAATTY 1 cut(s) 253
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.