Prupe.8G216600_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
19832427 .. 19833571
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G216600.1

Sequence Viewer

Length: 294 bp
ATGAAAGTTTCTAGCGTCTCTAGCTGTTGGAAAATCCAGTGTTTGAAGTTGGTGAAGGGAATCGCAAGCACCGGATCTGCGGTCACACTTGTTAGCATTGAAAGAAGAGCATCAACTGGTTGTTGCCATGTATCCTATCTTTTGAGGAAGTTGATTTGGAAGTTGAAGTCACAATGGAAACAAGCTGTGGGATGGCGAAAGAGCTACACTCATTACACCTATGATCTTCAAAGCTATTCTCTCAACTTCGACAACGGTTTCGATGACCATCTTTCACCTCATAGTTTCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.13

Weight (kDa)

9.7

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44005
prunus_persica Prupe.8G216600_v2.0.a1
pyrus_communis pycom05g17420
rosa_chinensis RchiOBHm_Chr6g0286891
rosa_rugosa Rorug06G0184600
rosa_samantha Rh6BG301100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 80
AclWI GGATC 1 cut(s) 82
AgsI TTSAA 4 cut(s) 46, 101, 166, 230
AluBI AGCT 4 cut(s) 24, 185, 204, 234
AluI AGCT 4 cut(s) 24, 185, 204, 234
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 1 cut(s) 82
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AsuHPI GGTGA 2 cut(s) 64, 267
BccI CCATC 2 cut(s) 186, 276
BciVI GTATCC 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 2 cut(s) 12, 21
BfuI GTATCC 1 cut(s) 142
BmsI GCATC 1 cut(s) 119
BplI GAGNNNNNCTC 2 cut(s) 193, 225
BsaBI GATNNNNATC 1 cut(s) 267
BsaWI WCCGGW 2 cut(s) 71, 288
Bse1I ACTGG 2 cut(s) 37, 121
Bse8I GATNNNNATC 1 cut(s) 267
BseGI GGATG 1 cut(s) 197
BseJI GATNNNNATC 1 cut(s) 267
BseNI ACTGG 2 cut(s) 37, 121
BsiSI CCGG 2 cut(s) 72, 289
BsmAI GTCTC 1 cut(s) 22
BsmBI CGTCTC 1 cut(s) 22
Bsp143I GATC 2 cut(s) 74, 223
BspACI CCGC 1 cut(s) 80
BspPI GGATC 1 cut(s) 82
BspQI GCTCTTC 1 cut(s) 100
BsrI ACTGG 2 cut(s) 37, 121
BssMI GATC 2 cut(s) 74, 223
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 197
BstKTI GATC 2 cut(s) 77, 226
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 2 cut(s) 74, 223
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BsuI GTATCC 1 cut(s) 142
BtsCI GGATG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 67
CseI GACGC 1 cut(s) 4
CviAII CATG 1 cut(s) 128
CviJI RGCY 4 cut(s) 24, 185, 204, 234
CviKI_1 RGCY 4 cut(s) 24, 185, 204, 234
DpnI GATC 2 cut(s) 76, 225
DpnII GATC 2 cut(s) 74, 223
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 1 cut(s) 131
FaiI YATR 3 cut(s) 129, 222, 282
FatI CATG 1 cut(s) 127
FokI GGATG 1 cut(s) 204
FspBI CTAG 2 cut(s) 12, 21
HapII CCGG 2 cut(s) 72, 289
HgaI GACGC 1 cut(s) 4
Hin1II CATG 1 cut(s) 131
HinfI GANTC 1 cut(s) 60
HpaII CCGG 2 cut(s) 72, 289
HphI GGTGA 2 cut(s) 64, 267
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
Hsp92II CATG 1 cut(s) 131
Kzo9I GATC 2 cut(s) 74, 223
LguI GCTCTTC 1 cut(s) 100
LpnPI CCDG 3 cut(s) 50, 85, 102
LweI GCATC 1 cut(s) 119
MaeI CTAG 2 cut(s) 12, 21
MaeIII GTNAC 2 cut(s) 82, 168
MalI GATC 2 cut(s) 76, 225
MboI GATC 2 cut(s) 74, 223
MboII GAAGA 2 cut(s) 117, 218
MflI RGATCY 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 8
MnlI CCTC 2 cut(s) 138, 288
MspI CCGG 2 cut(s) 72, 289
MwoI GCNNNNNNNGC 1 cut(s) 21
NdeII GATC 2 cut(s) 74, 223
NlaIII CATG 1 cut(s) 131
NmuCI GTSAC 2 cut(s) 82, 168
PciSI GCTCTTC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 60
PsuI RGATCY 1 cut(s) 74
SapI GCTCTTC 1 cut(s) 100
Sau3AI GATC 2 cut(s) 74, 223
SetI ASST 6 cut(s) 26, 187, 206, 221, 236, 280
SfaNI GCATC 1 cut(s) 119
SgeI CNNG 9 cut(s) 24, 33, 49, 78, 84, 101, 129, 140, 194
SsiI CCGC 1 cut(s) 80
SspMI CTAG 2 cut(s) 12, 21
TaaI ACNGT 1 cut(s) 257
TaqI TCGA 2 cut(s) 249, 261
TfiI GAWTC 1 cut(s) 60
TscAI CASTG 1 cut(s) 44
TseFI GTSAC 2 cut(s) 82, 168
Tsp45I GTSAC 2 cut(s) 82, 168
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 44
XspI CTAG 2 cut(s) 12, 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.