Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015904

Physical Location & Seq

Genomic Coordinates Forward (+)

18462107 .. 18465097

Gene Structure 2991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAGTCTCTTTGGGTTAGGAAGAAATCAGAAGACTTTCCGACCTAAGAAGAGTGCACCTTCTGGAAGCAAGGGTGCACAGCTTCGAAAGCATATAGATGCCACCCTAGGAAGTGGGAACTTGAGAGAAGCTGTAAGACTTCCTCCGGGAGAGGATGCAAATGAATGGCTTGCTGTAAACACTGTGGATTTCTTTAATCAGGTGAATTTGCTATATGGCACCCTTACCGAGTTCTGCACACCTGATAACTGTCCTACAATGACTGCTGGCCCAAAGTACGAGTATAGATGGGCAGATGGTGTACAGATCAAGAAGCCCATCGAGGTTTCTGCTCCAAAGTATGTCGAGTACTTGATGGATTGGATCGAGACCCAACTCGATGATGAGACTTTATTTCCTCAAAGGCTTGGAGCACCATTTCCTCAGAACTTCAAAGATGTGGTGAAAACGATCTTTAAACGGCTATTCCGAGTTTATGCTCACATATACCACTCTCATTTCCAGAAAATCGTTAGCCTAAAAGAAGAAGCTCATCTCAACACTTGCTTCAAACACTTCATCCTCTTTACTCATGAATTTGGACTGATAGACAAGAAAGAACTCGCGCCTCTACAAGAGCTCATAGAATCTATCATTTCACCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005769 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0008283 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009705 GO:0009888 GO:0009987 GO:0010449 GO:0012505 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0022622 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034293 GO:0035265 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051301 GO:0051321 GO:0051704 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0099402 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04111 ko04390 ko04391 ko04392 map04111 map04390 map04391 map04392

Pfam Domains

Protein Families

Mob1_phocein

Protein Analysis

215

Amino Acids

24.7

Weight (kDa)

7.73

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mob1_phocein	PF03637	34 - 204	2.2e-82	Mob1/phocein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0015904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45550
fragaria_vesca	FvH4_1g08580
malus_domestica	MD02G1090000.v1.1 MD15G1216600.v1.1
prunus_persica	Prupe.7G200000_v2.0.a1
pyrus_communis	pycom02g07190 pycom15g19210
rosa_chinensis	RchiOBHm_Chr2g0094801
rosa_laevigata	RLG00000016522
rosa_multiflora	Rmu_sc0006422.1_g000025
rosa_roxburghii	Rroxscaffold_2G00146870
rosa_rugosa	Rorug02G0047100
rosa_samantha	Rh2AG094500 Rh2BG095100 Rh2DG093900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AccII	CGCG	1 cut(s)	605
AclWI	GGATC	1 cut(s)	371
AcsI	RAATTY	2 cut(s)	205, 575
AfaI	GTAC	3 cut(s)	278, 303, 350
AgsI	TTSAA	2 cut(s)	433, 550
AluBI	AGCT	4 cut(s)	82, 131, 530, 619
AluI	AGCT	4 cut(s)	82, 131, 530, 619
Alw21I	GWGCWC	4 cut(s)	58, 79, 415, 621
Alw26I	GTCTC	3 cut(s)	11, 362, 380
Alw44I	GTGCAC	2 cut(s)	54, 75
AlwI	GGATC	1 cut(s)	371
AoxI	GGCC	1 cut(s)	268
ApaLI	GTGCAC	2 cut(s)	54, 75
ApoI	RAATTY	2 cut(s)	205, 575
Asp700I	GAANNNNTTC	1 cut(s)	35
AspA2I	CCTAGG	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	607
AspS9I	GGNCC	1 cut(s)	269
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	3 cut(s)	214, 454, 630
AsuII	TTCGAA	1 cut(s)	85
AvrII	CCTAGG	1 cut(s)	106
BaeGI	GKGCMC	2 cut(s)	58, 79
BanI	GGYRCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	621
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	4 cut(s)	58, 79, 415, 621
BccI	CCATC	4 cut(s)	282, 290, 326, 349
BceAI	ACGGC	1 cut(s)	476
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	3 cut(s)	11, 362, 380
BfaI	CTAG	1 cut(s)	107
BlnI	CCTAGG	1 cut(s)	106
BmcAI	AGTACT	1 cut(s)	350
Bme1390I	CCNGG	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	2 cut(s)	88, 145
BpiI	GAAGAC	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	2 cut(s)	160, 558
BseMII	CTCAG	1 cut(s)	437
BseSI	GKGCMC	2 cut(s)	58, 79
BsgI	GTGCAG	1 cut(s)	220
Bsh1236I	CGCG	1 cut(s)	605
BshFI	GGCC	1 cut(s)	270
BshNI	GGYRCC	1 cut(s)	218
BsiHKAI	GWGCWC	4 cut(s)	58, 79, 415, 621
BsiSI	CCGG	1 cut(s)	146
BsmAI	GTCTC	3 cut(s)	11, 362, 380
BsnI	GGCC	1 cut(s)	270
Bso31I	GGTCTC	1 cut(s)	362
Bsp119I	TTCGAA	1 cut(s)	85
Bsp1286I	GDGCHC	4 cut(s)	58, 79, 415, 621
Bsp1407I	TGTACA	1 cut(s)	301
Bsp143I	GATC	3 cut(s)	306, 363, 450
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	1 cut(s)	436
BspFNI	CGCG	1 cut(s)	605
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	1 cut(s)	220
BspPI	GGATC	1 cut(s)	371
BspT104I	TTCGAA	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	362
BsrGI	TGTACA	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	3 cut(s)	306, 363, 450
BssT1I	CCWWGG	1 cut(s)	106
Bst4CI	ACNGT	2 cut(s)	184, 251
Bst6I	CTCTTC	1 cut(s)	44
BstAUI	TGTACA	1 cut(s)	301
BstBI	TTCGAA	1 cut(s)	85
BstC8I	GCNNGC	2 cut(s)	171, 268
BstDEI	CTNAG	2 cut(s)	45, 423
BstF5I	GGATG	2 cut(s)	160, 558
BstFNI	CGCG	1 cut(s)	605
BstHHI	GCGC	1 cut(s)	607
BstKTI	GATC	3 cut(s)	309, 366, 453
BstMAI	GTCTC	3 cut(s)	11, 362, 380
BstMBI	GATC	3 cut(s)	306, 363, 450
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	145
BstSLI	GKGCMC	2 cut(s)	58, 79
BstUI	CGCG	1 cut(s)	605
BstV2I	GAAGAC	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	160, 558
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	171, 268
CciI	TCATGA	1 cut(s)	571
CfoI	GCGC	1 cut(s)	607
Cfr13I	GGNCC	1 cut(s)	269
Csp6I	GTAC	3 cut(s)	277, 302, 349
CviAII	CATG	1 cut(s)	572
CviQI	GTAC	3 cut(s)	277, 302, 349
DdeI	CTNAG	2 cut(s)	45, 423
DpnI	GATC	3 cut(s)	308, 365, 452
DpnII	GATC	3 cut(s)	306, 363, 450
DraI	TTTAAA	1 cut(s)	457
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Ecl136II	GAGCTC	1 cut(s)	619
Eco130I	CCWWGG	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	621
Eco31I	GGTCTC	1 cut(s)	362
Eco53kI	GAGCTC	1 cut(s)	619
EcoICRI	GAGCTC	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	1 cut(s)	575
FatI	CATG	1 cut(s)	571
FokI	GGATG	2 cut(s)	167, 545
FriOI	GRGCYC	1 cut(s)	621
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	1 cut(s)	606
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	1 cut(s)	146
HhaI	GCGC	1 cut(s)	607
Hin1II	CATG	1 cut(s)	575
Hin6I	GCGC	1 cut(s)	605
HinP1I	GCGC	1 cut(s)	605
HinfI	GANTC	2 cut(s)	4, 626
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	3 cut(s)	214, 454, 630
Hpy166II	GTNNAC	4 cut(s)	56, 77, 178, 302
Hpy188I	TCNGA	4 cut(s)	30, 41, 426, 470
Hpy188III	TCNNGA	5 cut(s)	63, 310, 367, 502, 572
Hpy8I	GTNNAC	4 cut(s)	56, 77, 178, 302
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	2 cut(s)	184, 251
HpyCH4V	TGCA	4 cut(s)	56, 77, 158, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	2 cut(s)	45, 423
Hsp92II	CATG	1 cut(s)	575
HspAI	GCGC	1 cut(s)	605
Kzo9I	GATC	3 cut(s)	306, 363, 450
LmnI	GCTCC	2 cut(s)	337, 410
LpnPI	CCDG	6 cut(s)	48, 159, 185, 252, 255, 515
LweI	GCATC	2 cut(s)	88, 145
MaeI	CTAG	1 cut(s)	107
MalI	GATC	3 cut(s)	308, 365, 452
MboI	GATC	3 cut(s)	306, 363, 450
MboII	GAAGA	4 cut(s)	33, 43, 61, 536
MhlI	GDGCHC	4 cut(s)	58, 79, 415, 621
MluCI	AATT	2 cut(s)	205, 575
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	7 cut(s)	145, 153, 316, 408, 432, 572, 618
MroXI	GAANNNNTTC	1 cut(s)	35
MseI	TTAA	2 cut(s)	195, 456
MslI	CAYNNNNRTG	1 cut(s)	96
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	147
MvnI	CGCG	1 cut(s)	605
MwoI	GCNNNNNNNGC	1 cut(s)	88
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	3 cut(s)	306, 363, 450
NlaIII	CATG	1 cut(s)	575
NlaIV	GGNNCC	1 cut(s)	220
NspV	TTCGAA	1 cut(s)	85
PagI	TCATGA	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	1 cut(s)	466
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	626
PfoI	TCCNGGA	1 cut(s)	145
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	621
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	269
RsaI	GTAC	3 cut(s)	278, 303, 350
RsaNI	GTAC	3 cut(s)	277, 302, 349
RseI	CAYNNNNRTG	1 cut(s)	96
SacI	GAGCTC	1 cut(s)	621
SaqAI	TTAA	2 cut(s)	195, 456
Sau3AI	GATC	3 cut(s)	306, 363, 450
Sau96I	GGNCC	1 cut(s)	269
ScaI	AGTACT	1 cut(s)	350
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	4 cut(s)	58, 79, 415, 621
SfaNI	GCATC	2 cut(s)	88, 145
SfuI	TTCGAA	1 cut(s)	85
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	2 cut(s)	205, 575
SspMI	CTAG	1 cut(s)	107
SstI	GAGCTC	1 cut(s)	621
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	2 cut(s)	184, 251
TaqI	TCGA	5 cut(s)	85, 321, 345, 366, 378
TasI	AATT	2 cut(s)	205, 575
TatI	WGTACW	2 cut(s)	301, 348
TfiI	GAWTC	1 cut(s)	626
Tru1I	TTAA	2 cut(s)	195, 456
Tru9I	TTAA	2 cut(s)	195, 456
TscAI	CASTG	1 cut(s)	187
TspDTI	ATGAA	3 cut(s)	177, 547, 588
TspRI	CASTG	1 cut(s)	187
VneI	GTGCAC	2 cut(s)	54, 75
XapI	RAATTY	2 cut(s)	205, 575
XmaJI	CCTAGG	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	1 cut(s)	107
ZrmI	AGTACT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.