Rh2DG093900

kinase activator-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015904
Physical Location & Seq
Forward (+)
7386616 .. 7389553
2938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG093900.1

Sequence Viewer

Length: 582 bp
ATGCAGGGTGCTCAGCTGCAAAAACATATTGATGCTACTTTGGGCAGTGGGAACCTTAGGGAAGCCGTGCGCCTGCCTCCCGGAGAAGATATAAATGAATGGCTCGCAGTAAACACTGTTGATTTTTTCAACCAAGTGAACATTCTGTTTGGTACTCTAACCGAGTTCTGCACGCCAGTCAATTGTCCAACAATGTCTGCAGGACCAAAGTATGAGTACAGATGGGCTGATGGAGTAAACATTAAGAAACCAATAGAGGTCTCTGCTCCAAAATATGTGGAATATTTAATGGACTGGATTGAAGTTCAGCTTGATGAGGAATCAATCTTCCCTCAAAAATTGGGGGCACCATTTCCATCCAATTTCATAGATGTTGTCAAGACCATCTTTAAGCGAATGTTCCGTGTTTATGCCCATATCTACCACTCTCACTTCCAGAAAATTGTGAGTCTGAAGGAAGAAGCTCATCTCAATACTTGCTTTAAGCACTTTGTTCTCTTCACTTGGGAATTCCGCTTGATTGACAAAGGAGAGCTTGCACCTCTTCAAGACCTTGTTGAGTCTATTCTACAGCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04111 ko04390 ko04391 ko04392 map04111 map04390 map04391 map04392
Pfam Domains
Protein Families
Mob1_phocein

Protein Analysis

193

Amino Acids

22.28

Weight (kDa)

5.68

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mob1_phocein PF03637 12 - 182 3.4e-79 Mob1/phocein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45550
fragaria_vesca FvH4_1g08580
malus_domestica MD02G1090000.v1.1 MD15G1216600.v1.1
prunus_persica Prupe.7G200000_v2.0.a1
pyrus_communis pycom02g07190 pycom15g19210
rosa_chinensis RchiOBHm_Chr2g0094801
rosa_laevigata RLG00000016522
rosa_multiflora Rmu_sc0006422.1_g000025
rosa_roxburghii Rroxscaffold_2G00146870
rosa_rugosa Rorug02G0047100
rosa_samantha Rh2AG094500 Rh2BG095100 Rh2DG093900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 346
AciI CCGC 1 cut(s) 514
AcsI RAATTY 1 cut(s) 509
AcuI CTGAAG 1 cut(s) 473
AfaI GTAC 2 cut(s) 154, 218
AgsI TTSAA 3 cut(s) 130, 302, 548
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AluBI AGCT 4 cut(s) 16, 310, 464, 535
AluI AGCT 4 cut(s) 16, 310, 464, 535
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 16
ApoI RAATTY 1 cut(s) 509
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 81
AvaII GGWCC 1 cut(s) 203
AxyI CCTNAGG 1 cut(s) 56
BaeGI GKGCMC 1 cut(s) 349
BanI GGYRCC 1 cut(s) 346
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 3
BccI CCATC 4 cut(s) 216, 224, 364, 392
BceAI ACGGC 1 cut(s) 50
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 265
BfmI CTRYAG 2 cut(s) 198, 569
BisI GCNGC 1 cut(s) 17
BlpI GCTNAGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 2 cut(s) 53, 348
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 22
Bpu1102I GCTNAGC 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 265
Bse1I ACTGG 2 cut(s) 176, 299
Bse21I CCTNAGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 356
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 2 cut(s) 176, 299
BseSI GKGCMC 1 cut(s) 349
BseXI GCAGC 1 cut(s) 3
BsgI GTGCAG 1 cut(s) 154
BshNI GGYRCC 1 cut(s) 346
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 265
Bso31I GGTCTC 1 cut(s) 265
Bsp1286I GDGCHC 2 cut(s) 13, 349
Bsp1720I GCTNAGC 1 cut(s) 12
BspACI CCGC 1 cut(s) 514
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 53, 348
BspMAI CTGCAG 1 cut(s) 202
BspT107I GGYRCC 1 cut(s) 346
BspTNI GGTCTC 1 cut(s) 265
BsrI ACTGG 2 cut(s) 176, 299
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 2 cut(s) 503, 549
BstC8I GCNNGC 4 cut(s) 74, 105, 173, 537
BstDEI CTNAG 2 cut(s) 12, 56
BstF5I GGATG 1 cut(s) 356
BstHHI GCGC 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 2 cut(s) 198, 569
BstSLI GKGCMC 1 cut(s) 349
BstV1I GCAGC 1 cut(s) 3
Bsu36I CCTNAGG 1 cut(s) 56
BtsCI GGATG 1 cut(s) 356
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 2 cut(s) 52, 114
Cac8I GCNNGC 4 cut(s) 74, 105, 173, 537
CfoI GCGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 2 cut(s) 153, 217
CspCI CAANNNNNGTGG 2 cut(s) 258, 293
CviJI RGCY 8 cut(s) 16, 65, 103, 227, 310, 464, 535, 574
CviKI_1 RGCY 8 cut(s) 16, 65, 103, 227, 310, 464, 535, 574
CviQI GTAC 2 cut(s) 153, 217
DdeI CTNAG 2 cut(s) 12, 56
Eam1104I CTCTTC 2 cut(s) 503, 549
EarI CTCTTC 2 cut(s) 503, 549
Eco31I GGTCTC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 473
Eco81I CCTNAGG 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 509
FaiI YATR 7 cut(s) 27, 92, 213, 276, 368, 411, 417
FalI AAGNNNNNCTT 6 cut(s) 294, 326, 371, 403, 519, 551
Fnu4HI GCNGC 1 cut(s) 17
FokI GGATG 1 cut(s) 343
Fsp4HI GCNGC 1 cut(s) 17
GlaI GCGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 17
HapII CCGG 1 cut(s) 81
HhaI GCGC 1 cut(s) 72
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 3 cut(s) 320, 448, 560
HpaII CCGG 1 cut(s) 81
Hpy166II GTNNAC 3 cut(s) 112, 139, 238
Hpy188I TCNGA 1 cut(s) 453
Hpy188III TCNNGA 3 cut(s) 379, 436, 548
Hpy8I GTNNAC 3 cut(s) 112, 139, 238
HpyAV CCTTC 1 cut(s) 448
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 5 cut(s) 4, 19, 171, 200, 539
HpyF3I CTNAG 2 cut(s) 12, 56
HspAI GCGC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 6 cut(s) 86, 94, 186, 189, 280, 449
Lsp1109I GCAGC 1 cut(s) 3
LweI GCATC 1 cut(s) 22
MboII GAAGA 5 cut(s) 98, 319, 470, 490, 536
MfeI CAATTG 1 cut(s) 181
MhlI GDGCHC 2 cut(s) 13, 349
MluCI AATT 5 cut(s) 181, 338, 361, 441, 509
MlyI GAGTC 2 cut(s) 457, 569
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 5 cut(s) 87, 250, 310, 342, 552
MseI TTAA 4 cut(s) 243, 287, 390, 483
MslI CAYNNNNRTG 1 cut(s) 30
MspA1I CMGCKG 1 cut(s) 16
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 81
MunI CAATTG 1 cut(s) 181
NciI CCSGG 1 cut(s) 81
NlaIV GGNNCC 2 cut(s) 53, 348
PfeI GAWTC 1 cut(s) 320
PfoI TCCNGGA 1 cut(s) 79
PkrI GCNGC 1 cut(s) 18
PleI GAGTC 2 cut(s) 456, 568
PpsI GAGTC 2 cut(s) 456, 568
PspN4I GGNNCC 2 cut(s) 53, 348
PspPI GGNCC 1 cut(s) 203
PstI CTGCAG 1 cut(s) 202
PvuII CAGCTG 1 cut(s) 16
RsaI GTAC 2 cut(s) 154, 218
RsaNI GTAC 2 cut(s) 153, 217
RseI CAYNNNNRTG 1 cut(s) 30
SaqAI TTAA 4 cut(s) 243, 287, 390, 483
SatI GCNGC 1 cut(s) 17
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 2 cut(s) 457, 569
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 2 cut(s) 13, 349
SetI ASST 8 cut(s) 18, 57, 261, 312, 466, 537, 544, 555
SfaNI GCATC 1 cut(s) 22
SfcI CTRYAG 2 cut(s) 198, 569
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 30
Sse9I AATT 5 cut(s) 181, 338, 361, 441, 509
SsiI CCGC 1 cut(s) 514
SspI AATATT 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 118
TasI AATT 5 cut(s) 181, 338, 361, 441, 509
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 4 cut(s) 243, 287, 390, 483
Tru9I TTAA 4 cut(s) 243, 287, 390, 483
TscAI CASTG 2 cut(s) 52, 121
TseI GCWGC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 111, 355
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 2 cut(s) 52, 121
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.