RchiOBHm_Chr2g0094801

kinase activator-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015904
Physical Location & Seq
Forward (+)
7730819 .. 7733295
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46980

Sequence Viewer

Length: 651 bp
ATGAGTCTCTTTGGTCTCGGAAGCAGAAATCAAAAGACCTTCCGGCCTAAAAAGAGTGCTCCATCAGGAAGCAAGGGTGCTCAGCTGCAAAAACATATTGATGCTACTTTGGGCAGTGGGAACCTTAGGGAAGCCGTGCGCCTGCCTCCCGGAGAAGATATAAATGAATGGCTCGCAGTAAACACTGTTGATTTTTTCAACCAAGTGAACATTCTGTTTGGTACTCTAACCGAGTTCTGCACGCCAGTCAATTGTCCAACAATGTCTGCAGGACCAAAGTATGAGTACAGATGGGCTGATGGAGTAAACATTAAGAAACCAATAGAGGTCTCTGCTCCAAAATATGTGGAATATTTAATGGACTGGATTGAAGTTCAGCTTGATGAGGAATCAATCTTCCCTCAAAAATTGGGGGCACCATTTCCATCCAATTTCATAGATGTTGTCAAGACCATCTTTAAGCGAATGTTCCGTGTTTATGCCCATATCTACCACTCTCACTTCCAGAAAATTGTGAGTCTGAAGGAAGAAGCTCATCTCAATACTTGCTTTAAGCACTTTGTTCTCTTCACTTGGGAATTCCGCTTGATTGACAAAGGAGAGCTTGCACCTCTTCAAGACCTTGTTGAGTCTATTCTACAGCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04111 ko04390 ko04391 ko04392 map04111 map04390 map04391 map04392
Pfam Domains
Protein Families
Mob1_phocein

Protein Analysis

216

Amino Acids

24.71

Weight (kDa)

7.73

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mob1_phocein PF03637 35 - 205 5.1e-79 Mob1/phocein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45550
fragaria_vesca FvH4_1g08580
malus_domestica MD02G1090000.v1.1 MD15G1216600.v1.1
prunus_persica Prupe.7G200000_v2.0.a1
pyrus_communis pycom02g07190 pycom15g19210
rosa_chinensis RchiOBHm_Chr2g0094801
rosa_laevigata RLG00000016522
rosa_multiflora Rmu_sc0006422.1_g000025
rosa_roxburghii Rroxscaffold_2G00146870
rosa_rugosa Rorug02G0047100
rosa_samantha Rh2AG094500 Rh2BG095100 Rh2DG093900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 415
AciI CCGC 1 cut(s) 583
AcsI RAATTY 1 cut(s) 578
AcuI CTGAAG 1 cut(s) 542
AfaI GTAC 2 cut(s) 223, 287
AgsI TTSAA 3 cut(s) 199, 371, 617
AjuI GAANNNNNNNTTGG 2 cut(s) 195, 227
AluBI AGCT 4 cut(s) 85, 379, 533, 604
AluI AGCT 4 cut(s) 85, 379, 533, 604
Alw21I GWGCWC 2 cut(s) 61, 82
Alw26I GTCTC 3 cut(s) 11, 20, 334
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 1 cut(s) 578
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 272
AsuC2I CCSGG 1 cut(s) 150
AvaII GGWCC 1 cut(s) 272
AxyI CCTNAGG 1 cut(s) 125
BaeGI GKGCMC 1 cut(s) 418
BanI GGYRCC 1 cut(s) 415
Bbv12I GWGCWC 2 cut(s) 61, 82
BbvI GCAGC 1 cut(s) 72
BccI CCATC 5 cut(s) 70, 285, 293, 433, 461
BceAI ACGGC 1 cut(s) 119
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 3 cut(s) 11, 20, 334
BfmI CTRYAG 2 cut(s) 267, 638
BisI GCNGC 1 cut(s) 86
BlpI GCTNAGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 87
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 2 cut(s) 122, 417
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 91
Bpu1102I GCTNAGC 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 150
BsaI GGTCTC 2 cut(s) 20, 334
Bse1I ACTGG 2 cut(s) 245, 368
Bse21I CCTNAGG 1 cut(s) 125
BseGI GGATG 1 cut(s) 425
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 2 cut(s) 245, 368
BseSI GKGCMC 1 cut(s) 418
BseXI GCAGC 1 cut(s) 72
BsgI GTGCAG 1 cut(s) 223
BshFI GGCC 1 cut(s) 46
BshNI GGYRCC 1 cut(s) 415
BsiHKAI GWGCWC 2 cut(s) 61, 82
BsiSI CCGG 2 cut(s) 43, 150
BsmAI GTCTC 3 cut(s) 11, 20, 334
BsnI GGCC 1 cut(s) 46
Bso31I GGTCTC 2 cut(s) 20, 334
Bsp1286I GDGCHC 3 cut(s) 61, 82, 418
Bsp1720I GCTNAGC 1 cut(s) 81
BspACI CCGC 1 cut(s) 583
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 122, 417
BspMAI CTGCAG 1 cut(s) 271
BspT107I GGYRCC 1 cut(s) 415
BspTNI GGTCTC 2 cut(s) 20, 334
BsrI ACTGG 2 cut(s) 245, 368
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 2 cut(s) 572, 618
BstC8I GCNNGC 4 cut(s) 143, 174, 242, 606
BstDEI CTNAG 2 cut(s) 81, 125
BstF5I GGATG 1 cut(s) 425
BstHHI GCGC 1 cut(s) 141
BstMAI GTCTC 3 cut(s) 11, 20, 334
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 2 cut(s) 267, 638
BstSLI GKGCMC 1 cut(s) 418
BstV1I GCAGC 1 cut(s) 72
Bsu36I CCTNAGG 1 cut(s) 125
BsuRI GGCC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 425
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 2 cut(s) 121, 183
Cac8I GCNNGC 4 cut(s) 143, 174, 242, 606
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 222, 286
CspCI CAANNNNNGTGG 2 cut(s) 327, 362
CviJI RGCY 9 cut(s) 46, 85, 134, 172, 296, 379, 533, 604, 643
CviKI_1 RGCY 9 cut(s) 46, 85, 134, 172, 296, 379, 533, 604, 643
CviQI GTAC 2 cut(s) 222, 286
DdeI CTNAG 2 cut(s) 81, 125
Eam1104I CTCTTC 2 cut(s) 572, 618
EarI CTCTTC 2 cut(s) 572, 618
Eco31I GGTCTC 2 cut(s) 20, 334
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 542
Eco81I CCTNAGG 1 cut(s) 125
EcoRI GAATTC 1 cut(s) 578
FaiI YATR 7 cut(s) 96, 161, 282, 345, 437, 480, 486
FalI AAGNNNNNCTT 6 cut(s) 363, 395, 440, 472, 588, 620
Fnu4HI GCNGC 1 cut(s) 86
FokI GGATG 1 cut(s) 412
Fsp4HI GCNGC 1 cut(s) 86
GlaI GCGC 1 cut(s) 140
GluI GCNGC 1 cut(s) 86
HaeIII GGCC 1 cut(s) 46
HapII CCGG 2 cut(s) 43, 150
HhaI GCGC 1 cut(s) 141
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HinfI GANTC 4 cut(s) 4, 389, 517, 629
HpaII CCGG 2 cut(s) 43, 150
Hpy166II GTNNAC 3 cut(s) 181, 208, 307
Hpy188I TCNGA 2 cut(s) 20, 522
Hpy188III TCNNGA 4 cut(s) 66, 448, 505, 617
Hpy8I GTNNAC 3 cut(s) 181, 208, 307
HpyAV CCTTC 2 cut(s) 49, 517
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4V TGCA 4 cut(s) 88, 240, 269, 608
HpyF3I CTNAG 2 cut(s) 81, 125
HspAI GCGC 1 cut(s) 139
LmnI GCTCC 2 cut(s) 64, 340
LpnPI CCDG 8 cut(s) 51, 56, 155, 163, 255, 258, 349, 518
Lsp1109I GCAGC 1 cut(s) 72
LweI GCATC 1 cut(s) 91
MboII GAAGA 5 cut(s) 167, 388, 539, 559, 605
MfeI CAATTG 1 cut(s) 250
MhlI GDGCHC 3 cut(s) 61, 82, 418
MluCI AATT 5 cut(s) 250, 407, 430, 510, 578
MlyI GAGTC 3 cut(s) 13, 526, 638
MmeI TCCRAC 1 cut(s) 281
MnlI CCTC 5 cut(s) 156, 319, 379, 411, 621
MseI TTAA 4 cut(s) 312, 356, 459, 552
MslI CAYNNNNRTG 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 85
MspI CCGG 2 cut(s) 43, 150
MspR9I CCNGG 1 cut(s) 150
MunI CAATTG 1 cut(s) 250
NciI CCSGG 1 cut(s) 150
NlaIV GGNNCC 2 cut(s) 122, 417
PfeI GAWTC 1 cut(s) 389
PfoI TCCNGGA 1 cut(s) 148
PkrI GCNGC 1 cut(s) 87
PleI GAGTC 3 cut(s) 12, 525, 637
PpsI GAGTC 3 cut(s) 12, 525, 637
PspN4I GGNNCC 2 cut(s) 122, 417
PspPI GGNCC 1 cut(s) 272
PstI CTGCAG 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 85
RsaI GTAC 2 cut(s) 223, 287
RsaNI GTAC 2 cut(s) 222, 286
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 4 cut(s) 312, 356, 459, 552
SatI GCNGC 1 cut(s) 86
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 3 cut(s) 13, 526, 638
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 3 cut(s) 61, 82, 418
SetI ASST 9 cut(s) 41, 87, 126, 330, 381, 535, 606, 613, 624
SfaNI GCATC 1 cut(s) 91
SfcI CTRYAG 2 cut(s) 267, 638
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 99
Sse9I AATT 5 cut(s) 250, 407, 430, 510, 578
SsiI CCGC 1 cut(s) 583
SspI AATATT 1 cut(s) 353
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 187
TasI AATT 5 cut(s) 250, 407, 430, 510, 578
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 4 cut(s) 312, 356, 459, 552
Tru9I TTAA 4 cut(s) 312, 356, 459, 552
TscAI CASTG 2 cut(s) 121, 190
TseI GCWGC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 180, 424
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 2 cut(s) 121, 190
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.