Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015217

Physical Location & Seq

Genomic Coordinates Reverse (-)

21764937 .. 21767013

Gene Structure 2077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCTTTAACATTGTCAACCACAAAGACCTTCACTAACATAAACTGCTCAAACAATACTTCCAACATAACCACCTTTAAGCCTCTCAAGCTTCCTCTTTTCTGGCCATGGCAAAAGGTCAAAATGGGTCCTTTAAGTGTTTCTCCTATGGGTTTTGGGACATGGGCTTGGGGTAATCAGCTTCTTTGGGGTTATCAGACTTCCATGGATGATCAGCTTCAACAAGCTTTTGAATTGGCTTTGGAAAATGGAATCAATTTGTTTGATACTGCTGATTCTTATGGCACTGGTAGGCTTAATGGCCAAAGTGAGAGACTTTTGGGGAAATTCATTAAAGAATCTCAAGGACTTAAAGGGAAACAAAATGAAGTAGTGGTAGCTACAAAGTTTGCAGCTTATCCATGGAGGTTAACTTCAGGACAGTTTGTGAATGCCTGCAGAGCTTCTTTAGACCGGCTTCAGATAGACCAGCTCGGGATTGGACAGCTTCACTGGTCAACTGCAAGCTACGCGCCTCTACAAGAGCTTGTTCTTTGGGATGGTCTAGTGCAAATGTACGAAAAGGGTTTAGTTAGAGCCGTTGGAGTTAGTAACTATGGACCTCAACAGCTTGTGAAGATTCATGATTACCTTAAAACTCGAGGGGTTCCTTTATGTTCTGCCCAAGTGCAATTCTCATTGCTAAGCATGGGAAAAGAGCAACTAGAGATCAAGAGTATATGCGACGAGCTCGGGATTCGTTTAATCTCTTATAGTCCTCTTGGGCTAGGAATGCTAACTGGGAAATACTCCTCTTCAAAACTTCCCACTGGTCCACGATCATTGCTGTTCCGACAAATTCTTCCTGGATTAGAACCTCTTCTTTTAGCACTGAGCGAGATTGCAAAGAAACGAGGAAAGACTATGCCTCAGGTTGCAATAAACTGGTGCATATGCAAAGGGACAGTACCGATACCGGGAATCAAGTCGGTAAGACATGTTGAAGATAATTTGGGTGCTCTGGGATGGAAACTTACAAATGATGAACAGCTTCAGTTAGAATATGCAGCTAAAGAATCACCAAAGTCAATGATTCAGAATATTTTTCAGACAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010287 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0036094 GO:0042364 GO:0042651 GO:0042816 GO:0042817 GO:0042819 GO:0042821 GO:0042822 GO:0042823 GO:0043094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046184 GO:0046483 GO:0048037 GO:0050236 GO:0050661 GO:0050662 GO:0051186 GO:0051188 GO:0055035 GO:0055114 GO:0070402 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:0097159 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 ko01120 map00750 map01100 map01120

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

365

Amino Acids

40.58

Weight (kDa)

9.31

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	49 - 343	5.2e-57	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53580
fragaria_vesca	FvH4_7g32560
malus_domestica	MD07G1296900.v1.1
prunus_persica	Prupe.2G316500_v2.0.a1 Prupe.2G316500_v2.0.a1 Prupe.2G316500_v2.0.a1 Prupe.2G316500_v2.0.a1
pyrus_communis	pycom07g26960
rosa_chinensis	RchiOBHm_Chr1g0382411
rosa_laevigata	RLG00000026180
rosa_multiflora	Rmu_sc0000110.1_g000046 Rmu_sc0003885.1_g000012
rosa_roxburghii	Rroxscaffold_4G00278120
rosa_rugosa	Rorug01G0434200
rosa_samantha	Rh1AG458900
rosa_wichuraiana	Rw1G041210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	512
AcoI	YGGCCR	2 cut(s)	104, 301
AcsI	RAATTY	2 cut(s)	326, 837
AcuI	CTGAAG	3 cut(s)	399, 443, 1016
AfaI	GTAC	2 cut(s)	557, 948
AfiI	CCNNNNNNNGG	1 cut(s)	956
AflIII	ACRYGT	1 cut(s)	976
AgsI	TTSAA	4 cut(s)	221, 233, 798, 983
AjnI	CCWGG	1 cut(s)	844
Alw21I	GWGCWC	2 cut(s)	732, 1000
Alw26I	GTCTC	1 cut(s)	307
Ama87I	CYCGRG	3 cut(s)	473, 639, 731
AoxI	GGCC	2 cut(s)	104, 301
ApeKI	GCWGC	2 cut(s)	392, 1046
ApoI	RAATTY	2 cut(s)	326, 837
Asp700I	GAANNNNTTC	2 cut(s)	858, 1029
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	3 cut(s)	128, 599, 812
AsuC2I	CCSGG	1 cut(s)	957
AsuHPI	GGTGA	1 cut(s)	1050
AvaI	CYCGRG	3 cut(s)	473, 639, 731
AvaII	GGWCC	3 cut(s)	128, 599, 812
AxyI	CCTNAGG	1 cut(s)	909
BalI	TGGCCA	2 cut(s)	106, 303
BanII	GRGCYC	1 cut(s)	732
Bbv12I	GWGCWC	2 cut(s)	732, 1000
BbvI	GCAGC	2 cut(s)	404, 1058
BccI	CCATC	2 cut(s)	533, 999
BceAI	ACGGC	1 cut(s)	563
BciT130I	CCWGG	1 cut(s)	846
BclI	TGATCA	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	957
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	3 cut(s)	545, 704, 767
BfmI	CTRYAG	1 cut(s)	436
BisI	GCNGC	2 cut(s)	393, 1047
BlpI	GCTNAGC	1 cut(s)	683
BlsI	GCNGC	2 cut(s)	394, 1048
Bme1390I	CCNGG	2 cut(s)	846, 957
Bme18I	GGWCC	3 cut(s)	128, 599, 812
BmeT110I	CYCGRG	3 cut(s)	473, 639, 731
BmgT120I	GGNCC	3 cut(s)	128, 599, 812
BmiI	GGNNCC	2 cut(s)	129, 648
BmrFI	CCNGG	2 cut(s)	846, 957
BmrI	ACTGGG	1 cut(s)	789
BmuI	ACTGGG	1 cut(s)	789
Bpu1102I	GCTNAGC	1 cut(s)	683
BpuEI	CTTGAG	2 cut(s)	71, 327
BpuMI	CCSGG	1 cut(s)	957
BsaJI	CCNNGG	3 cut(s)	107, 204, 401
Bsc4I	CCNNNNNNNGG	1 cut(s)	956
Bse118I	RCCGGY	1 cut(s)	453
Bse1I	ACTGG	5 cut(s)	292, 497, 784, 814, 929
Bse21I	CCTNAGG	1 cut(s)	909
Bse3DI	GCAATG	2 cut(s)	677, 821
BseBI	CCWGG	1 cut(s)	846
BseDI	CCNNGG	3 cut(s)	107, 204, 401
BseGI	GGATG	3 cut(s)	214, 544, 1010
BseLI	CCNNNNNNNGG	1 cut(s)	956
BseMI	GCAATG	2 cut(s)	677, 821
BseMII	CTCAG	2 cut(s)	863, 923
BseNI	ACTGG	5 cut(s)	292, 497, 784, 814, 929
BseRI	GAGGAG	1 cut(s)	781
BseXI	GCAGC	2 cut(s)	404, 1058
Bsh1236I	CGCG	1 cut(s)	512
BshFI	GGCC	2 cut(s)	106, 303
BsiHKAI	GWGCWC	2 cut(s)	732, 1000
BsiHKCI	CYCGRG	3 cut(s)	473, 639, 731
BsiSI	CCGG	2 cut(s)	454, 956
BslFI	GGGAC	2 cut(s)	172, 955
BslI	CCNNNNNNNGG	1 cut(s)	956
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	2 cut(s)	172, 955
BsmI	GAATGC	2 cut(s)	436, 777
BsnI	GGCC	2 cut(s)	106, 303
BsoBI	CYCGRG	3 cut(s)	473, 639, 731
Bsp1286I	GDGCHC	2 cut(s)	732, 1000
Bsp143I	GATC	3 cut(s)	211, 708, 818
Bsp1720I	GCTNAGC	1 cut(s)	683
Bsp19I	CCATGG	3 cut(s)	107, 204, 401
BspANI	GGCC	2 cut(s)	106, 303
BspCNI	CTCAG	2 cut(s)	864, 922
BspFNI	CGCG	1 cut(s)	512
BspHI	TCATGA	1 cut(s)	622
BspLI	GGNNCC	2 cut(s)	129, 648
BspMAI	CTGCAG	1 cut(s)	440
BsrDI	GCAATG	2 cut(s)	677, 821
BsrFI	RCCGGY	1 cut(s)	453
BsrI	ACTGG	5 cut(s)	292, 497, 784, 814, 929
BssAI	RCCGGY	1 cut(s)	453
BssECI	CCNNGG	3 cut(s)	107, 204, 401
BssMI	GATC	3 cut(s)	211, 708, 818
BssT1I	CCWWGG	3 cut(s)	107, 204, 401
Bst2UI	CCWGG	1 cut(s)	846
Bst4CI	ACNGT	2 cut(s)	423, 946
Bst6I	CTCTTC	2 cut(s)	799, 864
BstC8I	GCNNGC	2 cut(s)	436, 505
BstDEI	CTNAG	3 cut(s)	683, 872, 909
BstDSI	CCRYGG	3 cut(s)	107, 204, 401
BstF5I	GGATG	3 cut(s)	214, 544, 1010
BstFNI	CGCG	1 cut(s)	512
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	3 cut(s)	214, 711, 821
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	3 cut(s)	211, 708, 818
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 440, 509, 772
BstNI	CCWGG	1 cut(s)	846
BstNSI	RCATGY	1 cut(s)	980
BstSCI	CCNGG	2 cut(s)	844, 955
BstSFI	CTRYAG	1 cut(s)	436
BstUI	CGCG	1 cut(s)	512
BstV1I	GCAGC	2 cut(s)	404, 1058
Bsu36I	CCTNAGG	1 cut(s)	909
BsuRI	GGCC	2 cut(s)	106, 303
BtgI	CCRYGG	3 cut(s)	107, 204, 401
BtsCI	GGATG	3 cut(s)	214, 544, 1010
BtsIMutI	CAGTG	4 cut(s)	285, 490, 807, 869
Cac8I	GCNNGC	2 cut(s)	436, 505
CciI	TCATGA	1 cut(s)	622
CfoI	GCGC	1 cut(s)	514
Cfr10I	RCCGGY	1 cut(s)	453
Cfr13I	GGNCC	3 cut(s)	128, 599, 812
Csp6I	GTAC	2 cut(s)	556, 947
CspCI	CAANNNNNGTGG	2 cut(s)	804, 839
CviAII	CATG	7 cut(s)	108, 162, 205, 402, 623, 688, 977
CviQI	GTAC	2 cut(s)	556, 947
DdeI	CTNAG	3 cut(s)	683, 872, 909
DpnI	GATC	3 cut(s)	213, 710, 820
DpnII	GATC	3 cut(s)	211, 708, 818
EaeI	YGGCCR	2 cut(s)	104, 301
Eam1104I	CTCTTC	2 cut(s)	799, 864
EarI	CTCTTC	2 cut(s)	799, 864
Ecl136II	GAGCTC	1 cut(s)	730
Eco130I	CCWWGG	3 cut(s)	107, 204, 401
Eco24I	GRGCYC	1 cut(s)	732
Eco47I	GGWCC	3 cut(s)	128, 599, 812
Eco53kI	GAGCTC	1 cut(s)	730
Eco57I	CTGAAG	3 cut(s)	399, 443, 1016
Eco81I	CCTNAGG	1 cut(s)	909
Eco88I	CYCGRG	3 cut(s)	473, 639, 731
EcoICRI	GAGCTC	1 cut(s)	730
EcoO109I	RGGNCCY	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	844
EcoT14I	CCWWGG	3 cut(s)	107, 204, 401
EcoT38I	GRGCYC	1 cut(s)	732
ErhI	CCWWGG	3 cut(s)	107, 204, 401
FaeI	CATG	7 cut(s)	111, 165, 208, 405, 626, 691, 980
FaqI	GGGAC	2 cut(s)	172, 955
FatI	CATG	7 cut(s)	107, 161, 204, 401, 622, 687, 976
FauNDI	CATATG	1 cut(s)	932
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	393, 1047
FokI	GGATG	3 cut(s)	221, 551, 1017
FriOI	GRGCYC	1 cut(s)	732
Fsp4HI	GCNGC	2 cut(s)	393, 1047
FspBI	CTAG	3 cut(s)	545, 704, 767
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	2 cut(s)	393, 1047
HaeIII	GGCC	2 cut(s)	106, 303
HapII	CCGG	2 cut(s)	454, 956
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	7 cut(s)	111, 165, 208, 405, 626, 691, 980
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HincII	GTYRAC	3 cut(s)	18, 411, 498
HindII	GTYRAC	3 cut(s)	18, 411, 498
HindIII	AAGCTT	2 cut(s)	89, 225
HinfI	GANTC	8 cut(s)	252, 275, 338, 619, 736, 960, 1055, 1072
HpaI	GTTAAC	1 cut(s)	411
HpaII	CCGG	2 cut(s)	454, 956
HphI	GGTGA	1 cut(s)	1050
Hpy166II	GTNNAC	4 cut(s)	18, 411, 498, 815
Hpy188I	TCNGA	5 cut(s)	198, 462, 833, 1077, 1089
Hpy188III	TCNNGA	5 cut(s)	417, 475, 623, 712, 733
Hpy8I	GTNNAC	4 cut(s)	18, 411, 498, 815
Hpy99I	CGWCG	1 cut(s)	728
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	2 cut(s)	423, 946
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 440, 509, 772
HpyF3I	CTNAG	3 cut(s)	683, 872, 909
Hsp92II	CATG	7 cut(s)	111, 165, 208, 405, 626, 691, 980
HspAI	GCGC	1 cut(s)	512
Ksp22I	TGATCA	1 cut(s)	211
KspAI	GTTAAC	1 cut(s)	411
Kzo9I	GATC	3 cut(s)	211, 708, 818
Lsp1109I	GCAGC	2 cut(s)	404, 1058
MaeI	CTAG	3 cut(s)	545, 704, 767
MaeIII	GTNAC	1 cut(s)	590
MalI	GATC	3 cut(s)	213, 710, 820
MboI	GATC	3 cut(s)	211, 708, 818
MboII	GAAGA	5 cut(s)	628, 786, 833, 851, 995
MhlI	GDGCHC	2 cut(s)	732, 1000
MlsI	TGGCCA	2 cut(s)	106, 303
MluCI	AATT	6 cut(s)	233, 256, 326, 671, 837, 988
MluNI	TGGCCA	2 cut(s)	106, 303
MmeI	TCCRAC	3 cut(s)	87, 562, 856
Mox20I	TGGCCA	2 cut(s)	106, 303
MroXI	GAANNNNTTC	2 cut(s)	858, 1029
MscI	TGGCCA	2 cut(s)	106, 303
MseI	TTAA	9 cut(s)	8, 78, 134, 297, 333, 351, 410, 633, 743
Msp20I	TGGCCA	2 cut(s)	106, 303
MspI	CCGG	2 cut(s)	454, 956
MspR9I	CCNGG	2 cut(s)	846, 957
Mva1269I	GAATGC	2 cut(s)	436, 777
MvaI	CCWGG	1 cut(s)	846
MvnI	CGCG	1 cut(s)	512
MwoI	GCNNNNNNNGC	4 cut(s)	88, 440, 509, 772
NciI	CCSGG	1 cut(s)	957
NcoI	CCATGG	3 cut(s)	107, 204, 401
NdeI	CATATG	1 cut(s)	932
NdeII	GATC	3 cut(s)	211, 708, 818
NlaIII	CATG	7 cut(s)	111, 165, 208, 405, 626, 691, 980
NlaIV	GGNNCC	2 cut(s)	129, 648
NspI	RCATGY	1 cut(s)	980
PaeR7I	CTCGAG	1 cut(s)	639
PagI	TCATGA	1 cut(s)	622
PciI	ACATGT	1 cut(s)	976
PctI	GAATGC	2 cut(s)	436, 777
PdmI	GAANNNNTTC	2 cut(s)	858, 1029
PfeI	GAWTC	8 cut(s)	252, 275, 338, 619, 736, 960, 1055, 1072
PfoI	TCCNGGA	1 cut(s)	844
PkrI	GCNGC	2 cut(s)	394, 1048
PpuMI	RGGWCCY	1 cut(s)	128
PscI	ACATGT	1 cut(s)	976
Psp124BI	GAGCTC	1 cut(s)	732
Psp5II	RGGWCCY	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	844
PspGI	CCWGG	1 cut(s)	844
PspN4I	GGNNCC	2 cut(s)	129, 648
PspPI	GGNCC	3 cut(s)	128, 599, 812
PspPPI	RGGWCCY	1 cut(s)	128
PspXI	VCTCGAGB	1 cut(s)	639
PstI	CTGCAG	1 cut(s)	440
RsaI	GTAC	2 cut(s)	557, 948
RsaNI	GTAC	2 cut(s)	556, 947
SacI	GAGCTC	1 cut(s)	732
SaqAI	TTAA	9 cut(s)	8, 78, 134, 297, 333, 351, 410, 633, 743
SatI	GCNGC	2 cut(s)	393, 1047
Sau3AI	GATC	3 cut(s)	211, 708, 818
Sau96I	GGNCC	3 cut(s)	128, 599, 812
ScrFI	CCNGG	2 cut(s)	846, 957
SduI	GDGCHC	2 cut(s)	732, 1000
SfcI	CTRYAG	1 cut(s)	436
Sfr274I	CTCGAG	1 cut(s)	639
SinI	GGWCC	3 cut(s)	128, 599, 812
SlaI	CTCGAG	1 cut(s)	639
SmlI	CTYRAG	3 cut(s)	86, 342, 639
SmoI	CTYRAG	3 cut(s)	86, 342, 639
Sse9I	AATT	6 cut(s)	233, 256, 326, 671, 837, 988
SspI	AATATT	1 cut(s)	1081
SspMI	CTAG	3 cut(s)	545, 704, 767
SstI	GAGCTC	1 cut(s)	732
StyD4I	CCNGG	2 cut(s)	844, 955
StyI	CCWWGG	3 cut(s)	107, 204, 401
TaaI	ACNGT	2 cut(s)	423, 946
TaqI	TCGA	1 cut(s)	640
TasI	AATT	6 cut(s)	233, 256, 326, 671, 837, 988
TfiI	GAWTC	8 cut(s)	252, 275, 338, 619, 736, 960, 1055, 1072
Tru1I	TTAA	9 cut(s)	8, 78, 134, 297, 333, 351, 410, 633, 743
Tru9I	TTAA	9 cut(s)	8, 78, 134, 297, 333, 351, 410, 633, 743
TscAI	CASTG	4 cut(s)	292, 497, 814, 876
TseI	GCWGC	2 cut(s)	392, 1046
TspDTI	ATGAA	4 cut(s)	319, 381, 611, 1038
TspRI	CASTG	4 cut(s)	292, 497, 814, 876
VpaK11BI	GGWCC	3 cut(s)	128, 599, 812
XapI	RAATTY	2 cut(s)	326, 837
XceI	RCATGY	1 cut(s)	980
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XhoI	CTCGAG	1 cut(s)	639
XmnI	GAANNNNTTC	2 cut(s)	858, 1029
XspI	CTAG	3 cut(s)	545, 704, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.