Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015217

Physical Location & Seq

Genomic Coordinates Reverse (-)

67316101 .. 67318308

Gene Structure 2208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60540

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGGTTGCTTAACCTTAAAAGCTACATCCTATTTCACCTGTTCAACTGACACTTCCCTTCCTTCTCTACCCTTCAAGCCCCTCAAGCTACCTCCCTTCTGGCCATGGCAAAAGCTCAAGGTGGGCCCTCTCAGTGTGTCTCCAATGGGGTTTGGAACTTGGGCTTGGGGCAACCAGCTTCTCTGGGGCTACCAAGAATCAATGGACAGTGAGCTTCAACAGGTTTTCAATCTTGCTGTCGATAATGGCATCAACCTTTTTGACACGGCAGATTCTTATGGAACCGGAAGGTTGAATGGCAAGAGTGAAAAGCTGCTTGGAAAGTTCATTAGAGAATTTCAAGGGCAAAAGCGGAAGGACATTGTGATTGCTACCAAGTTTGCAGCATACCCTTGGCGCCTAACACCAGGCCAATTTGTGAATGCTTGCAATGCCTCGCTAGATCGGATGCAGATTGAACAAATCGGAATAGGACAGTTACATTGGTCGACTGCAAATTATGCTCCTTTGCAGGAACGAGCTCTTTGGGATGGTTTAGTTGCAATGTATGATAAGGGTTTAGTTCAAGCTGTTGGGGTCAGCAACTATGGACCTAAGCAGCTCCTAAAGATTTATGAGTACCTCAAAGCCAGAGGAGTCCCCTTGTGCTCAGCTCAGGTGCAATTTTCTTTGTTAAGCGTTGGAGAAGATCAGTTGGAGATCAAGAATATATGCGACTCTCTGGGTATTCGCCTGATTGCTTATAGTCCTTTAGGACTTGGAATGCTTACCGGGAAATATACACCCTCGAATCTTCCAAGCGGCCCTAGGGGTTTCCTGTTCAAGCAAATTCTTCCAGGACTGGAGCCTTTGTTGAAATCACTTAAAGAAATTGCGCAGAAACGGAACAAAACTATACCACAAGTTGCCATAAATTGGTGCATTTCAAAGGGAACCATACCCATACCAGGAGTCAAGACGGTGAAACAAGTAGAAGAAAATTTGGGTGCTCTAGGTTGGCGCCTCAGTTCACAGGAGCTGCTTCAGTTAGAATATGCAGCACGCGAATCACCCCAAAAGATGATCCAAAACATTTTCCAAACAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010287 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0036094 GO:0042364 GO:0042651 GO:0042816 GO:0042817 GO:0042819 GO:0042821 GO:0042822 GO:0042823 GO:0043094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046184 GO:0046483 GO:0048037 GO:0050236 GO:0050661 GO:0050662 GO:0051186 GO:0051188 GO:0055035 GO:0055114 GO:0070402 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:0097159 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 ko01120 map00750 map01100 map01120

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

362

Amino Acids

40.32

Weight (kDa)

9.34

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	48 - 344	2.9e-59	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53580
fragaria_vesca	FvH4_7g32560
malus_domestica	MD07G1296900.v1.1
prunus_persica	Prupe.2G316500_v2.0.a1 Prupe.2G316500_v2.0.a1 Prupe.2G316500_v2.0.a1 Prupe.2G316500_v2.0.a1
pyrus_communis	pycom07g26960
rosa_chinensis	RchiOBHm_Chr1g0382411
rosa_laevigata	RLG00000026180
rosa_multiflora	Rmu_sc0000110.1_g000046 Rmu_sc0003885.1_g000012
rosa_roxburghii	Rroxscaffold_4G00278120
rosa_rugosa	Rorug01G0434200
rosa_samantha	Rh1AG458900
rosa_wichuraiana	Rw1G041210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	876
AccB1I	GGYRCC	2 cut(s)	396, 999
AccB7I	CCANNNNNTGG	1 cut(s)	915
AccI	GTMKAC	1 cut(s)	488
AccII	CGCG	1 cut(s)	1044
AciI	CCGC	2 cut(s)	352, 801
AclWI	GGATC	1 cut(s)	1057
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	3 cut(s)	335, 828, 979
AcuI	CTGAAG	1 cut(s)	1007
AcyI	GRCGYC	2 cut(s)	397, 1000
AfaI	GTAC	1 cut(s)	620
AfiI	CCNNNNNNNGG	2 cut(s)	915, 947
AjnI	CCWGG	3 cut(s)	406, 835, 946
AjuI	GAANNNNNNNTTGG	4 cut(s)	148, 180, 300, 332
Alw21I	GWGCWC	3 cut(s)	523, 650, 991
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	1057
AlwNI	CAGNNNCTG	1 cut(s)	1018
AoxI	GGCC	4 cut(s)	101, 124, 409, 802
ApaI	GGGCCC	1 cut(s)	128
ApeKI	GCWGC	5 cut(s)	313, 383, 598, 1018, 1037
ApoI	RAATTY	3 cut(s)	335, 828, 979
AspA2I	CCTAGG	1 cut(s)	806
AspLEI	GCGC	3 cut(s)	399, 877, 1002
AspS9I	GGNCC	4 cut(s)	124, 125, 590, 803
AsuC2I	CCSGG	1 cut(s)	772
AsuHPI	GGTGA	3 cut(s)	28, 973, 1041
AvaII	GGWCC	1 cut(s)	590
AvrII	CCTAGG	1 cut(s)	806
BaeGI	GKGCMC	1 cut(s)	128
BalI	TGGCCA	1 cut(s)	103
BanI	GGYRCC	2 cut(s)	396, 999
BanII	GRGCYC	2 cut(s)	128, 523
Bbv12I	GWGCWC	3 cut(s)	523, 650, 991
BbvI	GCAGC	5 cut(s)	300, 395, 610, 1005, 1049
BccI	CCATC	1 cut(s)	524
BceAI	ACGGC	1 cut(s)	282
BciT130I	CCWGG	3 cut(s)	408, 837, 948
BcnI	CCSGG	1 cut(s)	772
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	3 cut(s)	440, 807, 992
BfoI	RGCGCY	2 cut(s)	400, 1003
BisI	GCNGC	6 cut(s)	314, 384, 599, 802, 1019, 1038
BlnI	CCTAGG	1 cut(s)	806
BlpI	GCTNAGC	1 cut(s)	649
BlsI	GCNGC	6 cut(s)	315, 385, 600, 803, 1020, 1039
Bme1390I	CCNGG	4 cut(s)	408, 772, 837, 948
Bme18I	GGWCC	1 cut(s)	590
BmgT120I	GGNCC	4 cut(s)	124, 125, 590, 803
BmiI	GGNNCC	6 cut(s)	126, 283, 398, 846, 934, 1001
BmrFI	CCNGG	4 cut(s)	408, 772, 837, 948
BmsI	GCATC	2 cut(s)	258, 438
BpmI	CTGGAG	1 cut(s)	863
Bpu10I	CCTNAGC	2 cut(s)	594, 654
Bpu1102I	GCTNAGC	1 cut(s)	649
BpuEI	CTTGAG	2 cut(s)	68, 101
BpuMI	CCSGG	1 cut(s)	772
BsaHI	GRCGYC	2 cut(s)	397, 1000
BsaJI	CCNNGG	3 cut(s)	104, 392, 806
BsaWI	WCCGGW	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	836, 866
Bsc4I	CCNNNNNNNGG	2 cut(s)	915, 947
Bse1I	ACTGG	1 cut(s)	846
Bse3DI	GCAATG	2 cut(s)	436, 549
BseBI	CCWGG	3 cut(s)	408, 837, 948
BseDI	CCNNGG	3 cut(s)	104, 392, 806
BseGI	GGATG	3 cut(s)	26, 453, 535
BseLI	CCNNNNNNNGG	2 cut(s)	915, 947
BseMI	GCAATG	2 cut(s)	436, 549
BseMII	CTCAG	4 cut(s)	145, 663, 668, 1018
BseNI	ACTGG	1 cut(s)	846
BseRI	GAGGAG	1 cut(s)	648
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	5 cut(s)	300, 395, 610, 1005, 1049
Bsh1236I	CGCG	1 cut(s)	1044
BshFI	GGCC	4 cut(s)	103, 126, 411, 804
BshNI	GGYRCC	2 cut(s)	396, 999
BsiHKAI	GWGCWC	3 cut(s)	523, 650, 991
BsiSI	CCGG	2 cut(s)	285, 771
BslFI	GGGAC	1 cut(s)	623
BslI	CCNNNNNNNGG	2 cut(s)	915, 947
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	623
BsmI	GAATGC	2 cut(s)	427, 768
BsnI	GGCC	4 cut(s)	103, 126, 411, 804
Bsp120I	GGGCCC	1 cut(s)	124
Bsp1286I	GDGCHC	4 cut(s)	128, 523, 650, 991
Bsp143I	GATC	4 cut(s)	442, 688, 699, 1062
Bsp1720I	GCTNAGC	1 cut(s)	649
Bsp19I	CCATGG	1 cut(s)	104
BspACI	CCGC	2 cut(s)	352, 801
BspANI	GGCC	4 cut(s)	103, 126, 411, 804
BspCNI	CTCAG	4 cut(s)	144, 662, 667, 1017
BspFNI	CGCG	1 cut(s)	1044
BspLI	GGNNCC	6 cut(s)	126, 283, 398, 846, 934, 1001
BspPI	GGATC	1 cut(s)	1057
BspT107I	GGYRCC	2 cut(s)	396, 999
BsrDI	GCAATG	2 cut(s)	436, 549
BsrI	ACTGG	1 cut(s)	846
BssECI	CCNNGG	3 cut(s)	104, 392, 806
BssMI	GATC	4 cut(s)	442, 688, 699, 1062
BssNI	GRCGYC	2 cut(s)	397, 1000
BssT1I	CCWWGG	3 cut(s)	104, 392, 806
Bst2UI	CCWGG	3 cut(s)	408, 837, 948
Bst4CI	ACNGT	3 cut(s)	209, 477, 961
BstACI	GRCGYC	2 cut(s)	397, 1000
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstC8I	GCNNGC	2 cut(s)	427, 1042
BstDEI	CTNAG	5 cut(s)	131, 594, 649, 654, 1004
BstDSI	CCRYGG	1 cut(s)	104
BstF5I	GGATG	3 cut(s)	26, 453, 535
BstFNI	CGCG	1 cut(s)	1044
BstH2I	RGCGCY	2 cut(s)	400, 1003
BstHHI	GCGC	3 cut(s)	399, 877, 1002
BstKTI	GATC	4 cut(s)	445, 691, 702, 1065
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	4 cut(s)	442, 688, 699, 1062
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 431, 500
BstNI	CCWGG	3 cut(s)	408, 837, 948
BstSCI	CCNGG	4 cut(s)	406, 770, 835, 946
BstSLI	GKGCMC	1 cut(s)	128
BstUI	CGCG	1 cut(s)	1044
BstV1I	GCAGC	5 cut(s)	300, 395, 610, 1005, 1049
BsuRI	GGCC	4 cut(s)	103, 126, 411, 804
BtgI	CCRYGG	1 cut(s)	104
BtsCI	GGATG	3 cut(s)	26, 453, 535
BtsIMutI	CAGTG	2 cut(s)	139, 214
Cac8I	GCNNGC	2 cut(s)	427, 1042
CaiI	CAGNNNCTG	1 cut(s)	1018
CfoI	GCGC	3 cut(s)	399, 877, 1002
Cfr13I	GGNCC	4 cut(s)	124, 125, 590, 803
Csp6I	GTAC	1 cut(s)	619
CviAII	CATG	1 cut(s)	105
CviQI	GTAC	1 cut(s)	619
DdeI	CTNAG	5 cut(s)	131, 594, 649, 654, 1004
DinI	GGCGCC	2 cut(s)	398, 1001
DpnI	GATC	4 cut(s)	444, 690, 701, 1064
DpnII	GATC	4 cut(s)	442, 688, 699, 1062
EaeI	YGGCCR	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	521
Eco130I	CCWWGG	3 cut(s)	104, 392, 806
Eco24I	GRGCYC	2 cut(s)	128, 523
Eco47I	GGWCC	1 cut(s)	590
Eco53kI	GAGCTC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	1007
EcoICRI	GAGCTC	1 cut(s)	521
EcoO109I	RGGNCCY	1 cut(s)	125
EcoRII	CCWGG	3 cut(s)	406, 835, 946
EcoT14I	CCWWGG	3 cut(s)	104, 392, 806
EcoT38I	GRGCYC	2 cut(s)	128, 523
EgeI	GGCGCC	2 cut(s)	398, 1001
EheI	GGCGCC	2 cut(s)	398, 1001
ErhI	CCWWGG	3 cut(s)	104, 392, 806
FaeI	CATG	1 cut(s)	108
FaqI	GGGAC	1 cut(s)	623
FatI	CATG	1 cut(s)	104
FblI	GTMKAC	1 cut(s)	488
Fnu4HI	GCNGC	6 cut(s)	314, 384, 599, 802, 1019, 1038
FokI	GGATG	3 cut(s)	13, 460, 542
FriOI	GRGCYC	2 cut(s)	128, 523
Fsp4HI	GCNGC	6 cut(s)	314, 384, 599, 802, 1019, 1038
FspBI	CTAG	3 cut(s)	440, 807, 992
FspI	TGCGCA	1 cut(s)	876
GlaI	GCGC	3 cut(s)	398, 876, 1001
GluI	GCNGC	6 cut(s)	314, 384, 599, 802, 1019, 1038
GsuI	CTGGAG	1 cut(s)	863
HaeII	RGCGCY	2 cut(s)	400, 1003
HaeIII	GGCC	4 cut(s)	103, 126, 411, 804
HapII	CCGG	2 cut(s)	285, 771
HhaI	GCGC	3 cut(s)	399, 877, 1002
Hin1I	GRCGYC	2 cut(s)	397, 1000
Hin1II	CATG	1 cut(s)	108
Hin6I	GCGC	3 cut(s)	397, 875, 1000
HinP1I	GCGC	3 cut(s)	397, 875, 1000
HincII	GTYRAC	1 cut(s)	489
HindII	GTYRAC	1 cut(s)	489
HinfI	GANTC	7 cut(s)	197, 272, 636, 716, 790, 951, 1046
HpaII	CCGG	2 cut(s)	285, 771
HphI	GGTGA	3 cut(s)	28, 973, 1041
Hpy166II	GTNNAC	2 cut(s)	489, 1010
Hpy188I	TCNGA	2 cut(s)	447, 467
Hpy188III	TCNNGA	2 cut(s)	703, 955
Hpy8I	GTNNAC	2 cut(s)	489, 1010
HpyAV	CCTTC	6 cut(s)	68, 72, 82, 106, 282, 349
HpyCH4III	ACNGT	3 cut(s)	209, 477, 961
HpyCH4V	TGCA	9 cut(s)	383, 429, 451, 494, 511, 542, 661, 921, 1037
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 431, 500
HpyF3I	CTNAG	5 cut(s)	131, 594, 649, 654, 1004
Hsp92I	GRCGYC	2 cut(s)	397, 1000
Hsp92II	CATG	1 cut(s)	108
HspAI	GCGC	3 cut(s)	397, 875, 1000
KasI	GGCGCC	2 cut(s)	396, 999
Kzo9I	GATC	4 cut(s)	442, 688, 699, 1062
LmnI	GCTCC	4 cut(s)	508, 606, 844, 1015
Lsp1109I	GCAGC	5 cut(s)	300, 395, 610, 1005, 1049
LweI	GCATC	2 cut(s)	258, 438
MaeI	CTAG	3 cut(s)	440, 807, 992
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	4 cut(s)	444, 690, 701, 1064
MboI	GATC	4 cut(s)	442, 688, 699, 1062
MboII	GAAGA	4 cut(s)	698, 785, 824, 986
MhlI	GDGCHC	4 cut(s)	128, 523, 650, 991
MlsI	TGGCCA	1 cut(s)	103
MluCI	AATT	8 cut(s)	335, 413, 496, 662, 828, 870, 913, 979
MluNI	TGGCCA	1 cut(s)	103
Mly113I	GGCGCC	2 cut(s)	397, 1000
MlyI	GAGTC	3 cut(s)	645, 710, 960
MmeI	TCCRAC	2 cut(s)	661, 675
MnlI	CCTC	8 cut(s)	92, 102, 138, 445, 626, 632, 796, 1013
Mox20I	TGGCCA	1 cut(s)	103
MscI	TGGCCA	1 cut(s)	103
MseI	TTAA	4 cut(s)	11, 17, 674, 864
Msp20I	TGGCCA	1 cut(s)	103
MspI	CCGG	2 cut(s)	285, 771
MspR9I	CCNGG	4 cut(s)	408, 772, 837, 948
Mva1269I	GAATGC	2 cut(s)	427, 768
MvaI	CCWGG	3 cut(s)	408, 837, 948
MvnI	CGCG	1 cut(s)	1044
MwoI	GCNNNNNNNGC	3 cut(s)	85, 431, 500
NarI	GGCGCC	2 cut(s)	397, 1000
NciI	CCSGG	1 cut(s)	772
NcoI	CCATGG	1 cut(s)	104
NdeII	GATC	4 cut(s)	442, 688, 699, 1062
NlaIII	CATG	1 cut(s)	108
NlaIV	GGNNCC	6 cut(s)	126, 283, 398, 846, 934, 1001
NsbI	TGCGCA	1 cut(s)	876
PctI	GAATGC	2 cut(s)	427, 768
PfeI	GAWTC	4 cut(s)	197, 272, 790, 1046
PflMI	CCANNNNNTGG	1 cut(s)	915
PfoI	TCCNGGA	1 cut(s)	835
PkrI	GCNGC	6 cut(s)	315, 385, 600, 803, 1020, 1039
PleI	GAGTC	3 cut(s)	644, 710, 959
PluTI	GGCGCC	2 cut(s)	400, 1003
PpsI	GAGTC	3 cut(s)	644, 710, 959
Psp124BI	GAGCTC	1 cut(s)	523
Psp6I	CCWGG	3 cut(s)	406, 835, 946
PspGI	CCWGG	3 cut(s)	406, 835, 946
PspN4I	GGNNCC	6 cut(s)	126, 283, 398, 846, 934, 1001
PspOMI	GGGCCC	1 cut(s)	124
PspPI	GGNCC	4 cut(s)	124, 125, 590, 803
PstNI	CAGNNNCTG	1 cut(s)	1018
RsaI	GTAC	1 cut(s)	620
RsaNI	GTAC	1 cut(s)	619
SacI	GAGCTC	1 cut(s)	523
SalI	GTCGAC	1 cut(s)	487
SaqAI	TTAA	4 cut(s)	11, 17, 674, 864
SatI	GCNGC	6 cut(s)	314, 384, 599, 802, 1019, 1038
Sau3AI	GATC	4 cut(s)	442, 688, 699, 1062
Sau96I	GGNCC	4 cut(s)	124, 125, 590, 803
SchI	GAGTC	3 cut(s)	645, 710, 960
ScrFI	CCNGG	4 cut(s)	408, 772, 837, 948
SduI	GDGCHC	4 cut(s)	128, 523, 650, 991
SfaNI	GCATC	2 cut(s)	258, 438
SfoI	GGCGCC	2 cut(s)	398, 1001
SinI	GGWCC	1 cut(s)	590
SmlI	CTYRAG	2 cut(s)	83, 116
SmoI	CTYRAG	2 cut(s)	83, 116
Sse9I	AATT	8 cut(s)	335, 413, 496, 662, 828, 870, 913, 979
SsiI	CCGC	2 cut(s)	352, 801
SspDI	GGCGCC	2 cut(s)	396, 999
SspMI	CTAG	3 cut(s)	440, 807, 992
SstI	GAGCTC	1 cut(s)	523
StyD4I	CCNGG	4 cut(s)	406, 770, 835, 946
StyI	CCWWGG	3 cut(s)	104, 392, 806
TaaI	ACNGT	3 cut(s)	209, 477, 961
TaqI	TCGA	3 cut(s)	240, 488, 788
TasI	AATT	8 cut(s)	335, 413, 496, 662, 828, 870, 913, 979
TauI	GCSGC	1 cut(s)	804
TfiI	GAWTC	4 cut(s)	197, 272, 790, 1046
Tru1I	TTAA	4 cut(s)	11, 17, 674, 864
Tru9I	TTAA	4 cut(s)	11, 17, 674, 864
TscAI	CASTG	2 cut(s)	139, 214
TseI	GCWGC	5 cut(s)	313, 383, 598, 1018, 1037
TspDTI	ATGAA	1 cut(s)	316
TspGWI	ACGGA	1 cut(s)	898
TspRI	CASTG	2 cut(s)	139, 214
Van91I	CCANNNNNTGG	1 cut(s)	915
VpaK11BI	GGWCC	1 cut(s)	590
XapI	RAATTY	3 cut(s)	335, 828, 979
XmaJI	CCTAGG	1 cut(s)	806
XmiI	GTMKAC	1 cut(s)	488
XspI	CTAG	3 cut(s)	440, 807, 992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.