Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0015217

Physical Location & Seq

Genomic Coordinates Forward (+)

68160435 .. 68162029

Gene Structure 1595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G041210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCTTGCTTAACCTTAAAAGCTACATCCTATTTCACCTGTTCAAGTGACACTTCCCTTCCTTCTCTACCCTTCAAGCCCCTCAAGCTACCTCCCTTCTGGCCATGGCAAAAGCTCAAGCTTCTCTGGGGTTACCAGGAATCAATGGACAGTGAGCTTCAACAGGTTTTCAATCTTGCTGTCGATAATGGCATCAACCTTTTTGACACGGCAGATTCTTATGGAACCGGAAGGTTGAATGGCAAGAGTGAAAAGCTGCTTGGAAAGTTCATTAGAGAATTTCAAGGGCAAAAGCGGAAGGACATTGTGATTGCTACCAAGTTTGCTGCATACCCTTGGCGCCTAACACCAGGCCAATTTGTGAATGCTTGCAATGCCTCGCTAGATCGGATGCAGATTGAACAAATCGGAATAGGACAGTTACATTGGTCGACTGCAAATTATGCTCCTTTGCAGGAACGAGCTCTTTGGGATGGTTTAGTTGCAATGTATGATAAGGGTTTAGTTCAAGCAGTTGGGGTCAGCAACTATGGACCTAAGCAGCTCCTAAAGATTTATGAGTACCTCAAAGCCAGAGGAGTCCCCTTGTGCTCAGCTCAGGTGCAATTTTCTTTGTTAAGCGTTGGAGAAGATCAGTTGGAGATCAAGAATATATGCGACTCTCTGGGTATTCGCCTGATTGCTTATAGTCCTTTAGGACTTGGAATGCTTACCGGGAAATATACACCCTCGAATCTTCCAAGCGGCCCGAGGGGTTTCCTGTTCAAGCAAATTCTTCCAGGACTGGAGCCTTTGTTGAAATCACTTAAAGAAATTGCGCAGAAACGGAACAAAACTATACCACAAGTTGCCATAAATTGGTGCATTTCAAAGGGAACCATACCCATACCAGGAGTCAAGACGGTGAAACAAGTAGAAGAAAATTTGGGTGCTCTAGGTTGGCGCCTCAGTTCACAGGAGCTGCTTCAGTTAGAAAATGCAGCACGCGAATCACCCCAAAAGATGATCCAAAACATTTTCCAAACAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010287 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0036094 GO:0042364 GO:0042651 GO:0042816 GO:0042817 GO:0042819 GO:0042821 GO:0042822 GO:0042823 GO:0043094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046184 GO:0046483 GO:0048037 GO:0050236 GO:0050661 GO:0050662 GO:0051186 GO:0051188 GO:0055035 GO:0055114 GO:0070402 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:0097159 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 ko01120 map00750 map01100 map01120

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

343

Amino Acids

38.3

Weight (kDa)

9.35

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	44 - 326	3.9e-56	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53580
fragaria_vesca	FvH4_7g32560
malus_domestica	MD07G1296900.v1.1
prunus_persica	Prupe.2G316500_v2.0.a1 Prupe.2G316500_v2.0.a1 Prupe.2G316500_v2.0.a1 Prupe.2G316500_v2.0.a1
pyrus_communis	pycom07g26960
rosa_chinensis	RchiOBHm_Chr1g0382411
rosa_laevigata	RLG00000026180
rosa_multiflora	Rmu_sc0000110.1_g000046 Rmu_sc0003885.1_g000012
rosa_roxburghii	Rroxscaffold_4G00278120
rosa_rugosa	Rorug01G0434200
rosa_samantha	Rh1AG458900
rosa_wichuraiana	Rw1G041210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	819
AccB1I	GGYRCC	2 cut(s)	339, 942
AccB7I	CCANNNNNTGG	1 cut(s)	858
AccI	GTMKAC	1 cut(s)	431
AccII	CGCG	1 cut(s)	987
AciI	CCGC	2 cut(s)	295, 744
AclWI	GGATC	1 cut(s)	1000
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	3 cut(s)	278, 771, 922
AcuI	CTGAAG	1 cut(s)	950
AcyI	GRCGYC	2 cut(s)	340, 943
AfaI	GTAC	1 cut(s)	563
AfiI	CCNNNNNNNGG	2 cut(s)	858, 890
AjnI	CCWGG	4 cut(s)	135, 349, 778, 889
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
Alw21I	GWGCWC	3 cut(s)	466, 593, 934
AlwI	GGATC	1 cut(s)	1000
AlwNI	CAGNNNCTG	1 cut(s)	961
Ama87I	CYCGRG	1 cut(s)	748
AoxI	GGCC	3 cut(s)	101, 352, 745
ApeKI	GCWGC	5 cut(s)	256, 326, 541, 961, 980
ApoI	RAATTY	3 cut(s)	278, 771, 922
AspLEI	GCGC	3 cut(s)	342, 820, 945
AspS9I	GGNCC	2 cut(s)	533, 746
AsuC2I	CCSGG	1 cut(s)	715
AsuHPI	GGTGA	3 cut(s)	28, 916, 984
AvaI	CYCGRG	1 cut(s)	748
AvaII	GGWCC	1 cut(s)	533
BalI	TGGCCA	1 cut(s)	103
BanI	GGYRCC	2 cut(s)	339, 942
BanII	GRGCYC	1 cut(s)	466
Bbv12I	GWGCWC	3 cut(s)	466, 593, 934
BbvI	GCAGC	5 cut(s)	243, 313, 553, 948, 992
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	1 cut(s)	225
BciT130I	CCWGG	4 cut(s)	137, 351, 780, 891
BcnI	CCSGG	1 cut(s)	715
BfaI	CTAG	2 cut(s)	383, 935
BfoI	RGCGCY	2 cut(s)	343, 946
BisI	GCNGC	6 cut(s)	257, 327, 542, 745, 962, 981
BlpI	GCTNAGC	1 cut(s)	592
BlsI	GCNGC	6 cut(s)	258, 328, 543, 746, 963, 982
Bme1390I	CCNGG	5 cut(s)	137, 351, 715, 780, 891
Bme18I	GGWCC	1 cut(s)	533
BmeT110I	CYCGRG	1 cut(s)	748
BmgT120I	GGNCC	2 cut(s)	533, 746
BmiI	GGNNCC	5 cut(s)	226, 341, 789, 877, 944
BmrFI	CCNGG	5 cut(s)	137, 351, 715, 780, 891
BmsI	GCATC	2 cut(s)	201, 381
BpmI	CTGGAG	1 cut(s)	806
Bpu10I	CCTNAGC	2 cut(s)	537, 597
Bpu1102I	GCTNAGC	1 cut(s)	592
BpuEI	CTTGAG	2 cut(s)	68, 101
BpuMI	CCSGG	1 cut(s)	715
BsaHI	GRCGYC	2 cut(s)	340, 943
BsaJI	CCNNGG	3 cut(s)	104, 335, 749
BsaWI	WCCGGW	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	779, 809
Bsc4I	CCNNNNNNNGG	2 cut(s)	858, 890
Bse1I	ACTGG	1 cut(s)	789
Bse3DI	GCAATG	2 cut(s)	379, 492
BseBI	CCWGG	4 cut(s)	137, 351, 780, 891
BseDI	CCNNGG	3 cut(s)	104, 335, 749
BseGI	GGATG	3 cut(s)	26, 396, 478
BseLI	CCNNNNNNNGG	2 cut(s)	858, 890
BseMI	GCAATG	2 cut(s)	379, 492
BseMII	CTCAG	3 cut(s)	606, 611, 961
BseNI	ACTGG	1 cut(s)	789
BseRI	GAGGAG	1 cut(s)	591
BseXI	GCAGC	5 cut(s)	243, 313, 553, 948, 992
Bsh1236I	CGCG	1 cut(s)	987
BshFI	GGCC	3 cut(s)	103, 354, 747
BshNI	GGYRCC	2 cut(s)	339, 942
BsiHKAI	GWGCWC	3 cut(s)	466, 593, 934
BsiHKCI	CYCGRG	1 cut(s)	748
BsiSI	CCGG	2 cut(s)	228, 714
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	2 cut(s)	858, 890
BsmFI	GGGAC	1 cut(s)	566
BsmI	GAATGC	2 cut(s)	370, 711
BsnI	GGCC	3 cut(s)	103, 354, 747
BsoBI	CYCGRG	1 cut(s)	748
Bsp1286I	GDGCHC	3 cut(s)	466, 593, 934
Bsp143I	GATC	4 cut(s)	385, 631, 642, 1005
Bsp1720I	GCTNAGC	1 cut(s)	592
Bsp19I	CCATGG	1 cut(s)	104
BspACI	CCGC	2 cut(s)	295, 744
BspANI	GGCC	3 cut(s)	103, 354, 747
BspCNI	CTCAG	3 cut(s)	605, 610, 960
BspFNI	CGCG	1 cut(s)	987
BspLI	GGNNCC	5 cut(s)	226, 341, 789, 877, 944
BspPI	GGATC	1 cut(s)	1000
BspT107I	GGYRCC	2 cut(s)	339, 942
BsrDI	GCAATG	2 cut(s)	379, 492
BsrI	ACTGG	1 cut(s)	789
BssECI	CCNNGG	3 cut(s)	104, 335, 749
BssMI	GATC	4 cut(s)	385, 631, 642, 1005
BssNI	GRCGYC	2 cut(s)	340, 943
BssT1I	CCWWGG	2 cut(s)	104, 335
Bst2UI	CCWGG	4 cut(s)	137, 351, 780, 891
Bst4CI	ACNGT	3 cut(s)	152, 420, 904
BstACI	GRCGYC	2 cut(s)	340, 943
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstC8I	GCNNGC	3 cut(s)	7, 370, 985
BstDEI	CTNAG	4 cut(s)	537, 592, 597, 947
BstDSI	CCRYGG	1 cut(s)	104
BstEII	GGTNACC	1 cut(s)	131
BstF5I	GGATG	3 cut(s)	26, 396, 478
BstFNI	CGCG	1 cut(s)	987
BstH2I	RGCGCY	2 cut(s)	343, 946
BstHHI	GCGC	3 cut(s)	342, 820, 945
BstKTI	GATC	4 cut(s)	388, 634, 645, 1008
BstMBI	GATC	4 cut(s)	385, 631, 642, 1005
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 374, 443
BstNI	CCWGG	4 cut(s)	137, 351, 780, 891
BstPI	GGTNACC	1 cut(s)	131
BstSCI	CCNGG	5 cut(s)	135, 349, 713, 778, 889
BstUI	CGCG	1 cut(s)	987
BstV1I	GCAGC	5 cut(s)	243, 313, 553, 948, 992
BsuRI	GGCC	3 cut(s)	103, 354, 747
BtgI	CCRYGG	1 cut(s)	104
BtsCI	GGATG	3 cut(s)	26, 396, 478
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	3 cut(s)	7, 370, 985
CaiI	CAGNNNCTG	1 cut(s)	961
CfoI	GCGC	3 cut(s)	342, 820, 945
Cfr13I	GGNCC	2 cut(s)	533, 746
Csp6I	GTAC	1 cut(s)	562
CviAII	CATG	1 cut(s)	105
CviQI	GTAC	1 cut(s)	562
DdeI	CTNAG	4 cut(s)	537, 592, 597, 947
DinI	GGCGCC	2 cut(s)	341, 944
DpnI	GATC	4 cut(s)	387, 633, 644, 1007
DpnII	GATC	4 cut(s)	385, 631, 642, 1005
EaeI	YGGCCR	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	464
Eco130I	CCWWGG	2 cut(s)	104, 335
Eco24I	GRGCYC	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	533
Eco53kI	GAGCTC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	950
Eco88I	CYCGRG	1 cut(s)	748
Eco91I	GGTNACC	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	464
EcoO65I	GGTNACC	1 cut(s)	131
EcoRII	CCWGG	4 cut(s)	135, 349, 778, 889
EcoT14I	CCWWGG	2 cut(s)	104, 335
EcoT38I	GRGCYC	1 cut(s)	466
EgeI	GGCGCC	2 cut(s)	341, 944
EheI	GGCGCC	2 cut(s)	341, 944
ErhI	CCWWGG	2 cut(s)	104, 335
FaeI	CATG	1 cut(s)	108
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	1 cut(s)	104
FblI	GTMKAC	1 cut(s)	431
Fnu4HI	GCNGC	6 cut(s)	257, 327, 542, 745, 962, 981
FokI	GGATG	3 cut(s)	13, 403, 485
FriOI	GRGCYC	1 cut(s)	466
Fsp4HI	GCNGC	6 cut(s)	257, 327, 542, 745, 962, 981
FspBI	CTAG	2 cut(s)	383, 935
FspI	TGCGCA	1 cut(s)	819
GlaI	GCGC	3 cut(s)	341, 819, 944
GluI	GCNGC	6 cut(s)	257, 327, 542, 745, 962, 981
GsuI	CTGGAG	1 cut(s)	806
HaeII	RGCGCY	2 cut(s)	343, 946
HaeIII	GGCC	3 cut(s)	103, 354, 747
HapII	CCGG	2 cut(s)	228, 714
HhaI	GCGC	3 cut(s)	342, 820, 945
Hin1I	GRCGYC	2 cut(s)	340, 943
Hin1II	CATG	1 cut(s)	108
Hin6I	GCGC	3 cut(s)	340, 818, 943
HinP1I	GCGC	3 cut(s)	340, 818, 943
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	7 cut(s)	140, 215, 579, 659, 733, 894, 989
HpaII	CCGG	2 cut(s)	228, 714
HphI	GGTGA	3 cut(s)	28, 916, 984
Hpy166II	GTNNAC	2 cut(s)	432, 953
Hpy188I	TCNGA	2 cut(s)	390, 410
Hpy188III	TCNNGA	2 cut(s)	646, 898
Hpy8I	GTNNAC	2 cut(s)	432, 953
HpyAV	CCTTC	6 cut(s)	68, 72, 82, 106, 225, 292
HpyCH4III	ACNGT	3 cut(s)	152, 420, 904
HpyCH4V	TGCA	9 cut(s)	329, 372, 394, 437, 454, 485, 604, 864, 980
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 374, 443
HpyF3I	CTNAG	4 cut(s)	537, 592, 597, 947
Hsp92I	GRCGYC	2 cut(s)	340, 943
Hsp92II	CATG	1 cut(s)	108
HspAI	GCGC	3 cut(s)	340, 818, 943
KasI	GGCGCC	2 cut(s)	339, 942
Kzo9I	GATC	4 cut(s)	385, 631, 642, 1005
LmnI	GCTCC	4 cut(s)	451, 549, 787, 958
Lsp1109I	GCAGC	5 cut(s)	243, 313, 553, 948, 992
LweI	GCATC	2 cut(s)	201, 381
MaeI	CTAG	2 cut(s)	383, 935
MaeIII	GTNAC	3 cut(s)	47, 131, 420
MalI	GATC	4 cut(s)	387, 633, 644, 1007
MboI	GATC	4 cut(s)	385, 631, 642, 1005
MboII	GAAGA	4 cut(s)	641, 728, 767, 929
MhlI	GDGCHC	3 cut(s)	466, 593, 934
MlsI	TGGCCA	1 cut(s)	103
MluCI	AATT	8 cut(s)	278, 356, 439, 605, 771, 813, 856, 922
MluNI	TGGCCA	1 cut(s)	103
Mly113I	GGCGCC	2 cut(s)	340, 943
MlyI	GAGTC	3 cut(s)	588, 653, 903
MmeI	TCCRAC	2 cut(s)	604, 618
MnlI	CCTC	8 cut(s)	92, 102, 388, 569, 575, 739, 744, 956
Mox20I	TGGCCA	1 cut(s)	103
MscI	TGGCCA	1 cut(s)	103
MseI	TTAA	4 cut(s)	11, 17, 617, 807
Msp20I	TGGCCA	1 cut(s)	103
MspI	CCGG	2 cut(s)	228, 714
MspR9I	CCNGG	5 cut(s)	137, 351, 715, 780, 891
Mva1269I	GAATGC	2 cut(s)	370, 711
MvaI	CCWGG	4 cut(s)	137, 351, 780, 891
MvnI	CGCG	1 cut(s)	987
MwoI	GCNNNNNNNGC	3 cut(s)	85, 374, 443
NarI	GGCGCC	2 cut(s)	340, 943
NciI	CCSGG	1 cut(s)	715
NcoI	CCATGG	1 cut(s)	104
NdeII	GATC	4 cut(s)	385, 631, 642, 1005
NlaIII	CATG	1 cut(s)	108
NlaIV	GGNNCC	5 cut(s)	226, 341, 789, 877, 944
NmuCI	GTSAC	1 cut(s)	47
NsbI	TGCGCA	1 cut(s)	819
PctI	GAATGC	2 cut(s)	370, 711
PfeI	GAWTC	4 cut(s)	140, 215, 733, 989
PflMI	CCANNNNNTGG	1 cut(s)	858
PfoI	TCCNGGA	1 cut(s)	778
PkrI	GCNGC	6 cut(s)	258, 328, 543, 746, 963, 982
PleI	GAGTC	3 cut(s)	587, 653, 902
PluTI	GGCGCC	2 cut(s)	343, 946
PpsI	GAGTC	3 cut(s)	587, 653, 902
Psp124BI	GAGCTC	1 cut(s)	466
Psp6I	CCWGG	4 cut(s)	135, 349, 778, 889
PspEI	GGTNACC	1 cut(s)	131
PspGI	CCWGG	4 cut(s)	135, 349, 778, 889
PspN4I	GGNNCC	5 cut(s)	226, 341, 789, 877, 944
PspPI	GGNCC	2 cut(s)	533, 746
PstNI	CAGNNNCTG	1 cut(s)	961
RsaI	GTAC	1 cut(s)	563
RsaNI	GTAC	1 cut(s)	562
SacI	GAGCTC	1 cut(s)	466
SalI	GTCGAC	1 cut(s)	430
SaqAI	TTAA	4 cut(s)	11, 17, 617, 807
SatI	GCNGC	6 cut(s)	257, 327, 542, 745, 962, 981
Sau3AI	GATC	4 cut(s)	385, 631, 642, 1005
Sau96I	GGNCC	2 cut(s)	533, 746
SchI	GAGTC	3 cut(s)	588, 653, 903
ScrFI	CCNGG	5 cut(s)	137, 351, 715, 780, 891
SduI	GDGCHC	3 cut(s)	466, 593, 934
SfaNI	GCATC	2 cut(s)	201, 381
SfoI	GGCGCC	2 cut(s)	341, 944
SinI	GGWCC	1 cut(s)	533
SmlI	CTYRAG	2 cut(s)	83, 116
SmoI	CTYRAG	2 cut(s)	83, 116
Sse9I	AATT	8 cut(s)	278, 356, 439, 605, 771, 813, 856, 922
SsiI	CCGC	2 cut(s)	295, 744
SspDI	GGCGCC	2 cut(s)	339, 942
SspMI	CTAG	2 cut(s)	383, 935
SstI	GAGCTC	1 cut(s)	466
StyD4I	CCNGG	5 cut(s)	135, 349, 713, 778, 889
StyI	CCWWGG	2 cut(s)	104, 335
TaaI	ACNGT	3 cut(s)	152, 420, 904
TaqI	TCGA	3 cut(s)	183, 431, 731
TasI	AATT	8 cut(s)	278, 356, 439, 605, 771, 813, 856, 922
TauI	GCSGC	1 cut(s)	747
TfiI	GAWTC	4 cut(s)	140, 215, 733, 989
Tru1I	TTAA	4 cut(s)	11, 17, 617, 807
Tru9I	TTAA	4 cut(s)	11, 17, 617, 807
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	5 cut(s)	256, 326, 541, 961, 980
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	1 cut(s)	259
TspGWI	ACGGA	1 cut(s)	841
TspRI	CASTG	1 cut(s)	157
Van91I	CCANNNNNTGG	1 cut(s)	858
VpaK11BI	GGWCC	1 cut(s)	533
XapI	RAATTY	3 cut(s)	278, 771, 922
XmiI	GTMKAC	1 cut(s)	431
XspI	CTAG	2 cut(s)	383, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.