Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006893

Physical Location & Seq

Genomic Coordinates Forward (+)

23074867 .. 23077193

Gene Structure 2327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGCAGATAACAATTCACCACCTGGCTCTGTAGAACAGAAAGCAGATCAAATTGTTGAAGCTAATCCATTGGTGAAGGATGATACTTCGCTGGAAACCATAGTTCGAAGGTTCCAGGATTCAATGTCAGAGGCAAAGACTCATAAGTTCTGGGAGACTCAACCTGTTGGGCAGTTTAAGGATATTGGGGATACGAGTTTGCCTGAAGGTCCGATTGAGCCTGCAACTCCATTATCTGAGGTTAAGCAAGAGCCGTACAACCTTCCTTCTGTTTACGAGTGGACGACATGTGATATGAACTCTGATGATATGTGTTCAGAGGTATACAACCTTCTCAAGAACAACTATGTTGAGGATGATGAGAATATGTTCAGGTTCAATTACTCCAAGGAGTTTCTAAGGTGGGCACTACGTCCACCGGGTTATTACCAGAGCTGGCATATTGGAGTTCGAGCCAAGACTTCGAAGAAACTCGTTGCTTTCATCAGCGGCGTGCCAGCAAGAATCAGGGTGCGTGATGAGGTTGTTAAAATGGCAGAGATCAATTTCTTGTGTGTTCACAAGAAGCTCAGGTCTAAGAGGCTCGCTCCTGTCATGATCAAGGAGGTGACTAGAAGGGTTCACTTGGAGAACATATGGCAAGCAGCTTATACTGCAGGAGTTATCCTTCCTACACCAATCACCACCTGTCAATACTGGCACAGGTCATTGAACCCGAAGAAGCTAATTGATGTTGGGTTTTCAAGGCTTGGTGCGAGAATGACAATGAGCAGAACCATCAAACTCTACAAGTTACCAGATGCACCGATCACTCCTGGATTCAGGAAAATGGAACCACGCGATGTCCCTGCTGTTACACGGTTGCTTAGGAACTACCTCAGCCAGTTTGGAGTCGCGACTGACTTTGATGAGAATGATGTCGAGCATTGGCTACTCCCAAGAGAAGATGTCGTGGACAGTTACCTAGTAGAAAGCCCTGAAACTCACGATGTCACTGACTTCTGCAGCTTCTACACTCTCCCTTCAACCATCCTCGGTAACCCGAACTACACTACATTGAAAGCTGCGTATTCTTACTACAATGTGGCCACACAGACCTCGTTTCTTCAGCTGATGAATGATGCGCTAATTGTCTCAAAGCAAAAGGGTTTCGATGTGTTCAACGCGTTGGATGTGATGCACAATGAGAGTTTCTTGAAAGAACTGAAGTTTGGGCCAGGAGATGGACAACTTCATTACTATCTCTACAATTACCGTTTGAAAAGTGCCTTGAAGCCAGCGGAACTCGGGCTTGTTCTCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004379 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009987 GO:0010016 GO:0010064 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0018008 GO:0018193 GO:0018201 GO:0018377 GO:0019107 GO:0019538 GO:0031365 GO:0032501 GO:0032502 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048598 GO:0048731 GO:0048856 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NMT NMT_C

Protein Analysis

434

Amino Acids

49.8

Weight (kDa)

6.34

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NMT	PF01233	71 - 230	1.1e-79	Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
NMT_C	PF02799	244 - 425	3.8e-80	Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57020
fragaria_vesca	FvH4_1g07930
malus_domestica	MD02G1082900.v1.1 MD15G1211000.v1.1
prunus_persica	Prupe.3G045400_v2.0.a1 Prupe.7G205800_v2.0.a1 Prupe.7G205800_v2.0.a1
pyrus_communis	pycom02g06580 pycom15g18700
rosa_chinensis	RchiOBHm_Chr2g0093811 RchiOBHm_Chr2g0144431
rosa_laevigata	RLG00000016438 RLG00000020080
rosa_multiflora	Rmu_sc0002126.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101320
rosa_rugosa	Rorug02G0040100 Rorug02G0386500
rosa_samantha	Rh2AG086600 Rh2AG438800 Rh2BG086900 Rh2BG449100 Rh2CG089300 Rh2CG426000 Rh2DG085100 Rh2DG459000
rosa_wichuraiana	Rw2G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1303
AccB7I	CCANNNNNTGG	1 cut(s)	1223
AccI	GTMKAC	1 cut(s)	324
AccII	CGCG	3 cut(s)	840, 896, 1166
AciI	CCGC	2 cut(s)	489, 1280
AcoI	YGGCCR	1 cut(s)	1086
AcuI	CTGAAG	3 cut(s)	225, 1091, 1226
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	1223
AflIII	ACRYGT	2 cut(s)	287, 1164
AjnI	CCWGG	4 cut(s)	22, 114, 814, 1216
AjuI	GAANNNNNNNTTGG	2 cut(s)	1194, 1226
AluBI	AGCT	8 cut(s)	62, 435, 568, 647, 724, 1008, 1064, 1111
AluI	AGCT	8 cut(s)	62, 435, 568, 647, 724, 1008, 1064, 1111
Alw26I	GTCTC	2 cut(s)	149, 1138
Ama87I	CYCGRG	1 cut(s)	1286
AoxI	GGCC	2 cut(s)	1086, 1214
ApeKI	GCWGC	3 cut(s)	644, 1005, 1064
Asp700I	GAANNNNTTC	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	1126
AspS9I	GGNCC	2 cut(s)	209, 1214
AsuC2I	CCSGG	1 cut(s)	420
AsuHPI	GGTGA	4 cut(s)	9, 85, 619, 673
AsuII	TTCGAA	2 cut(s)	106, 464
AvaI	CYCGRG	1 cut(s)	1286
AvaII	GGWCC	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	409
BalI	TGGCCA	1 cut(s)	1088
BarI	GAAGNNNNNNTAC	2 cut(s)	315, 347
BbvCI	CCTCAGC	1 cut(s)	878
BbvI	GCAGC	3 cut(s)	656, 1017, 1051
BccI	CCATC	3 cut(s)	785, 1037, 1217
BceAI	ACGGC	1 cut(s)	238
BcgI	CGANNNNNNTGC	2 cut(s)	830, 864
BciT130I	CCWGG	4 cut(s)	24, 116, 816, 1218
BciVI	GTATCC	1 cut(s)	184
BclI	TGATCA	1 cut(s)	597
BcnI	CCSGG	1 cut(s)	420
BcoDI	GTCTC	2 cut(s)	149, 1138
BfaI	CTAG	2 cut(s)	612, 965
BfmI	CTRYAG	3 cut(s)	30, 654, 1003
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	4 cut(s)	490, 645, 1006, 1065
BlsI	GCNGC	4 cut(s)	491, 646, 1007, 1066
Bme1390I	CCNGG	5 cut(s)	24, 116, 420, 816, 1218
Bme18I	GGWCC	1 cut(s)	209
BmeT110I	CYCGRG	1 cut(s)	1286
BmgT120I	GGNCC	2 cut(s)	209, 1214
BmiI	GGNNCC	2 cut(s)	113, 834
BmrFI	CCNGG	5 cut(s)	24, 116, 420, 816, 1218
BmsI	GCATC	3 cut(s)	790, 1111, 1167
BplI	GAGNNNNNCTC	2 cut(s)	571, 603
Bpu10I	CCTNAGC	3 cut(s)	569, 866, 878
Bpu14I	TTCGAA	2 cut(s)	106, 464
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	420
BsaJI	CCNNGG	2 cut(s)	387, 1033
Bsc4I	CCNNNNNNNGG	1 cut(s)	1223
Bse1I	ACTGG	2 cut(s)	701, 883
BseBI	CCWGG	4 cut(s)	24, 116, 816, 1218
BseDI	CCNNGG	2 cut(s)	387, 1033
BseGI	GGATG	4 cut(s)	85, 361, 1029, 1177
BseLI	CCNNNNNNNGG	1 cut(s)	1223
BseMII	CTCAG	3 cut(s)	228, 583, 892
BseNI	ACTGG	2 cut(s)	701, 883
BseSI	GKGCMC	1 cut(s)	409
BseXI	GCAGC	3 cut(s)	656, 1017, 1051
Bsh1236I	CGCG	3 cut(s)	840, 896, 1166
BshFI	GGCC	2 cut(s)	1088, 1216
BsiHKCI	CYCGRG	1 cut(s)	1286
BsiSI	CCGG	1 cut(s)	419
BslFI	GGGAC	1 cut(s)	830
BslI	CCNNNNNNNGG	1 cut(s)	1223
BsmAI	GTCTC	2 cut(s)	149, 1138
BsmFI	GGGAC	1 cut(s)	830
BsnI	GGCC	2 cut(s)	1088, 1216
BsoBI	CYCGRG	1 cut(s)	1286
Bsp119I	TTCGAA	2 cut(s)	106, 464
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	4 cut(s)	46, 540, 597, 807
Bsp68I	TCGCGA	1 cut(s)	896
BspACI	CCGC	2 cut(s)	489, 1280
BspANI	GGCC	2 cut(s)	1088, 1216
BspCNI	CTCAG	3 cut(s)	229, 582, 891
BspFNI	CGCG	3 cut(s)	840, 896, 1166
BspHI	TCATGA	1 cut(s)	594
BspLI	GGNNCC	2 cut(s)	113, 834
BspMAI	CTGCAG	2 cut(s)	658, 1007
BspT104I	TTCGAA	2 cut(s)	106, 464
BsrI	ACTGG	2 cut(s)	701, 883
BssECI	CCNNGG	2 cut(s)	387, 1033
BssMI	GATC	4 cut(s)	46, 540, 597, 807
BssNAI	GTATAC	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	387
Bst1107I	GTATAC	1 cut(s)	325
Bst2UI	CCWGG	4 cut(s)	24, 116, 816, 1218
Bst4CI	ACNGT	3 cut(s)	861, 959, 1256
BstBI	TTCGAA	2 cut(s)	106, 464
BstC8I	GCNNGC	7 cut(s)	222, 437, 494, 498, 585, 642, 1278
BstDEI	CTNAG	6 cut(s)	237, 398, 569, 576, 866, 878
BstEII	GGTNACC	1 cut(s)	1037
BstF5I	GGATG	4 cut(s)	85, 361, 1029, 1177
BstFNI	CGCG	3 cut(s)	840, 896, 1166
BstHHI	GCGC	1 cut(s)	1126
BstKTI	GATC	4 cut(s)	49, 543, 600, 810
BstMAI	GTCTC	2 cut(s)	149, 1138
BstMBI	GATC	4 cut(s)	46, 540, 597, 807
BstMWI	GCNNNNNNNGC	1 cut(s)	653
BstNI	CCWGG	4 cut(s)	24, 116, 816, 1218
BstNSI	RCATGY	1 cut(s)	291
BstPI	GGTNACC	1 cut(s)	1037
BstSCI	CCNGG	5 cut(s)	22, 114, 418, 814, 1216
BstSFI	CTRYAG	3 cut(s)	30, 654, 1003
BstSLI	GKGCMC	1 cut(s)	409
BstUI	CGCG	3 cut(s)	840, 896, 1166
BstV1I	GCAGC	3 cut(s)	656, 1017, 1051
BstZ17I	GTATAC	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	1088, 1216
BtgZI	GCGATG	1 cut(s)	855
BtsCI	GGATG	4 cut(s)	85, 361, 1029, 1177
BtsIMutI	CAGTG	1 cut(s)	993
BtuMI	TCGCGA	1 cut(s)	896
Cac8I	GCNNGC	7 cut(s)	222, 437, 494, 498, 585, 642, 1278
CciI	TCATGA	1 cut(s)	594
CfoI	GCGC	1 cut(s)	1126
Cfr13I	GGNCC	2 cut(s)	209, 1214
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	2 cut(s)	288, 595
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	6 cut(s)	237, 398, 569, 576, 866, 878
DpnI	GATC	4 cut(s)	48, 542, 599, 809
DpnII	GATC	4 cut(s)	46, 540, 597, 807
EaeI	YGGCCR	1 cut(s)	1086
Eco130I	CCWWGG	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	209
Eco57I	CTGAAG	3 cut(s)	225, 1091, 1226
Eco88I	CYCGRG	1 cut(s)	1286
Eco91I	GGTNACC	1 cut(s)	1037
EcoO65I	GGTNACC	1 cut(s)	1037
EcoRII	CCWGG	4 cut(s)	22, 114, 814, 1216
EcoT14I	CCWWGG	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	2 cut(s)	291, 598
FaqI	GGGAC	1 cut(s)	830
FatI	CATG	2 cut(s)	287, 594
FauNDI	CATATG	1 cut(s)	635
FbaI	TGATCA	1 cut(s)	597
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	4 cut(s)	490, 645, 1006, 1065
FokI	GGATG	4 cut(s)	92, 368, 1016, 1184
Fsp4HI	GCNGC	4 cut(s)	490, 645, 1006, 1065
FspBI	CTAG	2 cut(s)	612, 965
GlaI	GCGC	1 cut(s)	1125
GluI	GCNGC	4 cut(s)	490, 645, 1006, 1065
HaeIII	GGCC	2 cut(s)	1088, 1216
HapII	CCGG	1 cut(s)	419
HhaI	GCGC	1 cut(s)	1126
Hin1II	CATG	2 cut(s)	291, 598
Hin6I	GCGC	1 cut(s)	1124
HinP1I	GCGC	1 cut(s)	1124
HinfI	GANTC	6 cut(s)	119, 139, 157, 504, 819, 891
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	4 cut(s)	9, 85, 619, 673
Hpy166II	GTNNAC	7 cut(s)	274, 282, 325, 416, 559, 622, 955
Hpy188I	TCNGA	5 cut(s)	130, 213, 238, 304, 319
Hpy188III	TCNNGA	6 cut(s)	337, 595, 823, 895, 986, 1195
Hpy8I	GTNNAC	7 cut(s)	274, 282, 325, 416, 559, 622, 955
HpyAV	CCTTC	9 cut(s)	70, 102, 200, 272, 276, 341, 609, 677, 1032
HpyCH4III	ACNGT	3 cut(s)	861, 959, 1256
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	5 cut(s)	224, 656, 803, 1005, 1180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	653
HpyF3I	CTNAG	6 cut(s)	237, 398, 569, 576, 866, 878
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	2 cut(s)	291, 598
HspAI	GCGC	1 cut(s)	1124
Ksp22I	TGATCA	1 cut(s)	597
Kzo9I	GATC	4 cut(s)	46, 540, 597, 807
LmnI	GCTCC	1 cut(s)	592
Lsp1109I	GCAGC	3 cut(s)	656, 1017, 1051
LweI	GCATC	3 cut(s)	790, 1111, 1167
MaeI	CTAG	2 cut(s)	612, 965
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	6 cut(s)	607, 792, 853, 959, 991, 1037
MalI	GATC	4 cut(s)	48, 542, 599, 809
MboI	GATC	4 cut(s)	46, 540, 597, 807
MboII	GAAGA	4 cut(s)	478, 730, 956, 1097
MhlI	GDGCHC	1 cut(s)	409
MlsI	TGGCCA	1 cut(s)	1088
MluCI	AATT	7 cut(s)	13, 51, 379, 544, 726, 1128, 1249
MluI	ACGCGT	1 cut(s)	1164
MluNI	TGGCCA	1 cut(s)	1088
MlyI	GAGTC	3 cut(s)	133, 151, 900
MmeI	TCCRAC	1 cut(s)	1149
Mox20I	TGGCCA	1 cut(s)	1088
MroXI	GAANNNNTTC	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	1088
MseI	TTAA	3 cut(s)	177, 243, 528
Msp20I	TGGCCA	1 cut(s)	1088
MspA1I	CMGCKG	3 cut(s)	489, 1111, 1280
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	5 cut(s)	24, 116, 420, 816, 1218
MvaI	CCWGG	4 cut(s)	24, 116, 816, 1218
MvnI	CGCG	3 cut(s)	840, 896, 1166
MwoI	GCNNNNNNNGC	1 cut(s)	653
NciI	CCSGG	1 cut(s)	420
NdeI	CATATG	1 cut(s)	635
NdeII	GATC	4 cut(s)	46, 540, 597, 807
NlaIII	CATG	2 cut(s)	291, 598
NlaIV	GGNNCC	2 cut(s)	113, 834
NmuCI	GTSAC	2 cut(s)	607, 991
NruI	TCGCGA	1 cut(s)	896
NspI	RCATGY	1 cut(s)	291
NspV	TTCGAA	2 cut(s)	106, 464
PagI	TCATGA	1 cut(s)	594
PciI	ACATGT	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	3 cut(s)	119, 504, 819
PflMI	CCANNNNNTGG	1 cut(s)	1223
PfoI	TCCNGGA	2 cut(s)	114, 814
PkrI	GCNGC	4 cut(s)	491, 646, 1007, 1066
PleI	GAGTC	3 cut(s)	133, 151, 899
PpsI	GAGTC	3 cut(s)	133, 151, 899
PscI	ACATGT	1 cut(s)	287
PsiI	TTATAA	1 cut(s)	1303
Psp6I	CCWGG	4 cut(s)	22, 114, 814, 1216
PspEI	GGTNACC	1 cut(s)	1037
PspGI	CCWGG	4 cut(s)	22, 114, 814, 1216
PspN4I	GGNNCC	2 cut(s)	113, 834
PspPI	GGNCC	2 cut(s)	209, 1214
PstI	CTGCAG	2 cut(s)	658, 1007
PvuII	CAGCTG	1 cut(s)	1111
RruI	TCGCGA	1 cut(s)	896
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	3 cut(s)	177, 243, 528
SatI	GCNGC	4 cut(s)	490, 645, 1006, 1065
Sau3AI	GATC	4 cut(s)	46, 540, 597, 807
Sau96I	GGNCC	2 cut(s)	209, 1214
SchI	GAGTC	3 cut(s)	133, 151, 900
ScrFI	CCNGG	5 cut(s)	24, 116, 420, 816, 1218
SduI	GDGCHC	1 cut(s)	409
SfaNI	GCATC	3 cut(s)	790, 1111, 1167
SfcI	CTRYAG	3 cut(s)	30, 654, 1003
SfuI	TTCGAA	2 cut(s)	106, 464
SinI	GGWCC	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	7 cut(s)	13, 51, 379, 544, 726, 1128, 1249
SsiI	CCGC	2 cut(s)	489, 1280
SspMI	CTAG	2 cut(s)	612, 965
StyD4I	CCNGG	5 cut(s)	22, 114, 418, 814, 1216
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	3 cut(s)	861, 959, 1256
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	5 cut(s)	106, 451, 464, 921, 1152
TasI	AATT	7 cut(s)	13, 51, 379, 544, 726, 1128, 1249
TauI	GCSGC	1 cut(s)	492
TfiI	GAWTC	3 cut(s)	119, 504, 819
Tru1I	TTAA	3 cut(s)	177, 243, 528
Tru9I	TTAA	3 cut(s)	177, 243, 528
TscAI	CASTG	1 cut(s)	1000
TseFI	GTSAC	2 cut(s)	607, 991
TseI	GCWGC	3 cut(s)	644, 1005, 1064
Tsp45I	GTSAC	2 cut(s)	607, 991
TspDTI	ATGAA	4 cut(s)	311, 472, 1130, 1223
TspRI	CASTG	1 cut(s)	1000
Van91I	CCANNNNNTGG	1 cut(s)	1223
VpaK11BI	GGWCC	1 cut(s)	209
XceI	RCATGY	1 cut(s)	291
XmiI	GTMKAC	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	2 cut(s)	612, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.