Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006893

Physical Location & Seq

Genomic Coordinates Reverse (-)

49316663 .. 49327681

Gene Structure 11019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0386500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAAAAGACATGGGGAACGCATATGGTGTTGTTTGTCAGTTTGGTCATGCTCATCACCTCAATATTACTGACACTGGTAATGATCATAATATGGAGAACACCACCAGTGCTGGTGGCGCTTTACTTCTCTGTCTTCTTCGTAATTGAAGGTGTTTATGTGAGTGCAGTCTTCAACAAGATCACGGAAGGTGGATGGATTCCTTTTTCCATATCCTTTATCCTTGCCTTCATTATGTTTGGTTGGTACTATGGGAGACAGAAAAAGGTAACATATGAATTGACTAATAAAATAACCTTGGACAGACTTGGAGTGCTACTATCTGATCCCAGTGTTCAAAGGGTTCCTGGATTCTGCTTCTTTTACACTAACATTCAAGATGGGCTCACTCCTGTTTTTGAACACTATGTTAAGACAATGAAATCCCTTCACCAGGTCACCGCGTTCACTACTCTTCGATATCGTTTGGTTCCTAAGGTTGCTCCTCATGAGAGGATTCTTTTCTGTAAAATTGGCCAGCAGAAAGGGGTTTATGGCTGCGTTATTCAATATGGCTACGCAGATCTCCTAAACCTTGAAGGAGATGATTTTGTTAGTCATGTTACAAATAGTTTGCGGGCACACATACAGGACAGCTCAGCTGGCCGTTTGCCATCTGATCCTGCAGAGATTCAACAAGAGTTATCTAATTTGGATGCTGCACAGATTCAACAAGAGCTATCTAATTTGGATGATCCTGCAGAGATTCAACAAGAGTTGTGTAATTTGGAAGAAGCAATCAGTGCTGGAATTGTTCATGTTCGAGGTAAGACGAGGTTTCATATTGGCAAGAGTTGTGGCTGGTTTGATAAGATTATGCTAGCATTTTATGAAGTTCTGCACAGTAATTGTAGGTCTGCTCTTCCTGCTCTCGGGGTGCCTCTGCCTCAGTGTATTGAGGTTGGAATGCTTTATGAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004379 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009987 GO:0010016 GO:0010064 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0018008 GO:0018193 GO:0018201 GO:0018377 GO:0019107 GO:0019538 GO:0031365 GO:0032501 GO:0032502 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048598 GO:0048731 GO:0048856 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

NMT NMT_C

Protein Analysis

320

Amino Acids

36.14

Weight (kDa)

6.14

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans	PF02705	12 - 102	6.1e-18	K+ potassium transporter integral membrane domain
K_trans_C	PF22776	116 - 318	1.2e-15	K+ potassium transporter C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57020
fragaria_vesca	FvH4_1g07930
malus_domestica	MD02G1082900.v1.1 MD15G1211000.v1.1
prunus_persica	Prupe.3G045400_v2.0.a1 Prupe.7G205800_v2.0.a1 Prupe.7G205800_v2.0.a1
pyrus_communis	pycom02g06580 pycom15g18700
rosa_chinensis	RchiOBHm_Chr2g0093811 RchiOBHm_Chr2g0144431
rosa_laevigata	RLG00000016438 RLG00000020080
rosa_multiflora	Rmu_sc0002126.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101320
rosa_rugosa	Rorug02G0040100 Rorug02G0386500
rosa_samantha	Rh2AG086600 Rh2AG438800 Rh2BG086900 Rh2BG449100 Rh2CG089300 Rh2CG426000 Rh2DG085100 Rh2DG459000
rosa_wichuraiana	Rw2G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	916
AccII	CGCG	1 cut(s)	443
AciI	CCGC	2 cut(s)	441, 616
AclWI	GGATC	3 cut(s)	320, 653, 728
AcoI	YGGCCR	2 cut(s)	514, 643
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	433, 911
AjnI	CCWGG	2 cut(s)	346, 432
AluBI	AGCT	3 cut(s)	636, 641, 718
AluI	AGCT	3 cut(s)	636, 641, 718
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	3 cut(s)	320, 653, 728
Ama87I	CYCGRG	1 cut(s)	911
AoxI	GGCC	2 cut(s)	514, 643
ApeKI	GCWGC	2 cut(s)	537, 698
AspLEI	GCGC	1 cut(s)	121
AsuHPI	GGTGA	3 cut(s)	49, 422, 430
AsuNHI	GCTAGC	1 cut(s)	859
AvaI	CYCGRG	1 cut(s)	911
AxyI	CCTNAGG	1 cut(s)	474
BaeGI	GKGCMC	1 cut(s)	622
BalI	TGGCCA	1 cut(s)	516
BanI	GGYRCC	1 cut(s)	916
BanII	GRGCYC	1 cut(s)	387
BbsI	GAAGAC	2 cut(s)	127, 163
BbvI	GCAGC	2 cut(s)	524, 685
BccI	CCATC	3 cut(s)	189, 374, 661
BceAI	ACGGC	1 cut(s)	630
BciT130I	CCWGG	2 cut(s)	348, 434
BclI	TGATCA	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	860
BfmI	CTRYAG	2 cut(s)	663, 738
BfoI	RGCGCY	1 cut(s)	122
BglII	AGATCT	1 cut(s)	562
BisI	GCNGC	2 cut(s)	538, 699
BlpI	GCTNAGC	1 cut(s)	637
BlsI	GCNGC	2 cut(s)	539, 700
Bme1390I	CCNGG	2 cut(s)	348, 434
BmeT110I	CYCGRG	1 cut(s)	911
BmiI	GGNNCC	3 cut(s)	345, 471, 918
BmrFI	CCNGG	2 cut(s)	348, 434
BmrI	ACTGGG	1 cut(s)	324
BmsI	GCATC	1 cut(s)	685
BmtI	GCTAGC	1 cut(s)	863
BmuI	ACTGGG	1 cut(s)	324
BpiI	GAAGAC	2 cut(s)	127, 163
Bpu1102I	GCTNAGC	1 cut(s)	637
BsaJI	CCNNGG	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 911
Bse1I	ACTGG	3 cut(s)	81, 107, 330
Bse21I	CCTNAGG	1 cut(s)	474
BseBI	CCWGG	2 cut(s)	348, 434
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	3 cut(s)	200, 700, 736
BseLI	CCNNNNNNNGG	2 cut(s)	433, 911
BseMII	CTCAG	2 cut(s)	651, 941
BseNI	ACTGG	3 cut(s)	81, 107, 330
BseRI	GAGGAG	1 cut(s)	474
BseSI	GKGCMC	1 cut(s)	622
BseXI	GCAGC	2 cut(s)	524, 685
BsgI	GTGCAG	3 cut(s)	186, 684, 863
Bsh1236I	CGCG	1 cut(s)	443
BshFI	GGCC	2 cut(s)	516, 645
BshNI	GGYRCC	1 cut(s)	916
BsiHKCI	CYCGRG	1 cut(s)	911
BslI	CCNNNNNNNGG	2 cut(s)	433, 911
BsmAI	GTCTC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	951
BsnI	GGCC	2 cut(s)	516, 645
BsoBI	CYCGRG	1 cut(s)	911
Bsp1286I	GDGCHC	2 cut(s)	387, 622
Bsp143I	GATC	6 cut(s)	84, 180, 325, 562, 658, 733
Bsp1720I	GCTNAGC	1 cut(s)	637
BspACI	CCGC	2 cut(s)	441, 616
BspANI	GGCC	2 cut(s)	516, 645
BspCNI	CTCAG	2 cut(s)	650, 940
BspFNI	CGCG	1 cut(s)	443
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	3 cut(s)	345, 471, 918
BspMAI	CTGCAG	2 cut(s)	667, 742
BspOI	GCTAGC	1 cut(s)	863
BspPI	GGATC	3 cut(s)	320, 653, 728
BspQI	GCTCTTC	1 cut(s)	906
BspT107I	GGYRCC	1 cut(s)	916
BsrI	ACTGG	3 cut(s)	81, 107, 330
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	6 cut(s)	84, 180, 325, 562, 658, 733
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	2 cut(s)	348, 434
Bst4CI	ACNGT	1 cut(s)	884
Bst6I	CTCTTC	2 cut(s)	459, 906
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstC8I	GCNNGC	4 cut(s)	518, 618, 643, 861
BstDEI	CTNAG	3 cut(s)	474, 637, 927
BstEII	GGTNACC	1 cut(s)	436
BstENI	CCTNNNNNAGG	1 cut(s)	431
BstF5I	GGATG	3 cut(s)	200, 700, 736
BstFNI	CGCG	1 cut(s)	443
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	6 cut(s)	87, 183, 328, 565, 661, 736
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	6 cut(s)	84, 180, 325, 562, 658, 733
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 642, 782, 905
BstNI	CCWGG	2 cut(s)	348, 434
BstPI	GGTNACC	1 cut(s)	436
BstSCI	CCNGG	2 cut(s)	346, 432
BstSFI	CTRYAG	2 cut(s)	663, 738
BstSLI	GKGCMC	1 cut(s)	622
BstUI	CGCG	1 cut(s)	443
BstV1I	GCAGC	2 cut(s)	524, 685
BstV2I	GAAGAC	2 cut(s)	127, 163
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
Bsu36I	CCTNAGG	1 cut(s)	474
BsuRI	GGCC	2 cut(s)	516, 645
BtsCI	GGATG	3 cut(s)	200, 700, 736
BtsIMutI	CAGTG	5 cut(s)	74, 114, 337, 787, 935
Cac8I	GCNNGC	4 cut(s)	518, 618, 643, 861
CciI	TCATGA	1 cut(s)	487
CfoI	GCGC	1 cut(s)	121
CsiI	ACCWGGT	1 cut(s)	432
Csp6I	GTAC	1 cut(s)	247
CspCI	CAANNNNNGTGG	2 cut(s)	817, 852
CviAII	CATG	5 cut(s)	12, 49, 488, 599, 797
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	3 cut(s)	474, 637, 927
DpnI	GATC	6 cut(s)	86, 182, 327, 564, 660, 735
DpnII	GATC	6 cut(s)	84, 180, 325, 562, 658, 733
EaeI	YGGCCR	2 cut(s)	514, 643
Eam1104I	CTCTTC	2 cut(s)	459, 906
EarI	CTCTTC	2 cut(s)	459, 906
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	387
Eco32I	GATATC	1 cut(s)	461
Eco81I	CCTNAGG	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	911
Eco91I	GGTNACC	1 cut(s)	436
EcoNI	CCTNNNNNAGG	1 cut(s)	431
EcoO65I	GGTNACC	1 cut(s)	436
EcoRII	CCWGG	2 cut(s)	346, 432
EcoRV	GATATC	1 cut(s)	461
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	5 cut(s)	15, 52, 491, 602, 800
FatI	CATG	5 cut(s)	11, 48, 487, 598, 796
FauI	CCCGC	1 cut(s)	609
FauNDI	CATATG	2 cut(s)	24, 274
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	538, 699
FokI	GGATG	3 cut(s)	207, 707, 743
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	2 cut(s)	538, 699
FspBI	CTAG	1 cut(s)	860
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	2 cut(s)	538, 699
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	516, 645
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	5 cut(s)	15, 52, 491, 602, 800
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HinfI	GANTC	6 cut(s)	199, 351, 496, 670, 706, 745
HphI	GGTGA	3 cut(s)	49, 422, 430
Hpy166II	GTNNAC	1 cut(s)	447
Hpy188I	TCNGA	2 cut(s)	325, 658
Hpy188III	TCNNGA	2 cut(s)	377, 488
Hpy8I	GTNNAC	1 cut(s)	447
HpyAV	CCTTC	5 cut(s)	143, 182, 238, 437, 572
HpyCH4III	ACNGT	1 cut(s)	884
HpyCH4V	TGCA	5 cut(s)	167, 665, 701, 740, 880
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 642, 782, 905
HpyF3I	CTNAG	3 cut(s)	474, 637, 927
Hsp92II	CATG	5 cut(s)	15, 52, 491, 602, 800
HspAI	GCGC	1 cut(s)	119
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	6 cut(s)	84, 180, 325, 562, 658, 733
LguI	GCTCTTC	1 cut(s)	906
LmnI	GCTCC	1 cut(s)	487
Lsp1109I	GCAGC	2 cut(s)	524, 685
LweI	GCATC	1 cut(s)	685
MabI	ACCWGGT	1 cut(s)	432
MaeI	CTAG	1 cut(s)	860
MaeIII	GTNAC	3 cut(s)	268, 436, 601
MalI	GATC	6 cut(s)	86, 182, 327, 564, 660, 735
MboI	GATC	6 cut(s)	84, 180, 325, 562, 658, 733
MboII	GAAGA	6 cut(s)	127, 130, 163, 446, 782, 893
MflI	RGATCY	1 cut(s)	562
MhlI	GDGCHC	2 cut(s)	387, 622
MlsI	TGGCCA	1 cut(s)	516
MluCI	AATT	8 cut(s)	144, 278, 510, 688, 724, 763, 789, 886
MluNI	TGGCCA	1 cut(s)	516
MmeI	TCCRAC	1 cut(s)	922
MnlI	CCTC	9 cut(s)	70, 486, 495, 797, 807, 930, 931, 936, 949
Mox20I	TGGCCA	1 cut(s)	516
MscI	TGGCCA	1 cut(s)	516
MseI	TTAA	1 cut(s)	411
Msp20I	TGGCCA	1 cut(s)	516
MspA1I	CMGCKG	1 cut(s)	641
MspR9I	CCNGG	2 cut(s)	348, 434
Mva1269I	GAATGC	1 cut(s)	951
MvaI	CCWGG	2 cut(s)	348, 434
MvnI	CGCG	1 cut(s)	443
MwoI	GCNNNNNNNGC	4 cut(s)	118, 642, 782, 905
NdeI	CATATG	2 cut(s)	24, 274
NdeII	GATC	6 cut(s)	84, 180, 325, 562, 658, 733
NheI	GCTAGC	1 cut(s)	859
NlaIII	CATG	5 cut(s)	15, 52, 491, 602, 800
NlaIV	GGNNCC	3 cut(s)	345, 471, 918
NmuCI	GTSAC	1 cut(s)	436
PagI	TCATGA	1 cut(s)	487
PciSI	GCTCTTC	1 cut(s)	906
PctI	GAATGC	1 cut(s)	951
PfeI	GAWTC	6 cut(s)	199, 351, 496, 670, 706, 745
PfoI	TCCNGGA	1 cut(s)	346
PkrI	GCNGC	2 cut(s)	539, 700
Psp6I	CCWGG	2 cut(s)	346, 432
PspEI	GGTNACC	1 cut(s)	436
PspGI	CCWGG	2 cut(s)	346, 432
PspN4I	GGNNCC	3 cut(s)	345, 471, 918
PstI	CTGCAG	2 cut(s)	667, 742
PsuI	RGATCY	1 cut(s)	562
PvuII	CAGCTG	1 cut(s)	641
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SapI	GCTCTTC	1 cut(s)	906
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	538, 699
Sau3AI	GATC	6 cut(s)	84, 180, 325, 562, 658, 733
ScrFI	CCNGG	2 cut(s)	348, 434
SduI	GDGCHC	2 cut(s)	387, 622
SexAI	ACCWGGT	1 cut(s)	432
SfaNI	GCATC	1 cut(s)	685
SfcI	CTRYAG	2 cut(s)	663, 738
Sse9I	AATT	8 cut(s)	144, 278, 510, 688, 724, 763, 789, 886
SsiI	CCGC	2 cut(s)	441, 616
SspI	AATATT	1 cut(s)	66
SspMI	CTAG	1 cut(s)	860
StyD4I	CCNGG	2 cut(s)	346, 432
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	884
TaqI	TCGA	2 cut(s)	457, 802
TasI	AATT	8 cut(s)	144, 278, 510, 688, 724, 763, 789, 886
TfiI	GAWTC	6 cut(s)	199, 351, 496, 670, 706, 745
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	5 cut(s)	81, 114, 337, 787, 935
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	2 cut(s)	537, 698
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	6 cut(s)	220, 291, 434, 785, 809, 885
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	5 cut(s)	81, 114, 337, 787, 935
XagI	CCTNNNNNAGG	1 cut(s)	431
XspI	CTAG	1 cut(s)	860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.